Literature DB >> 21582420

3-Methyl-sulfanyl-5-phenyl-4H-1,2,4-triazol-4-amine-water (6/1).

Deng-Ze Wu, Miao-Chang Liu, Hua-Yue Wu, Xiao-Bo Huang, Jian-Jun Li.   

Abstract

In the title compound, 6C(9)H(10)N(4)S·H(2)O, the dihedral angle between the five-membered n class="Chemical">triazole ring and the phenyl ring is 44.33 (16)°. The solvent water molecule is disordered about a special position with symmetry and its occupancy cannot be greater than 0.1667. The crystal structure is stabilized by inter-molecular N-H⋯N and C-H⋯N hydrogen bonds.

Entities:  

Year:  2009        PMID: 21582420      PMCID: PMC2969018          DOI: 10.1107/S1600536808041056

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to 1,2,4-triazoles, see: Feng et al. (1992 ▶); Hui et al. (2000 ▶); Prasad et al. (1989 ▶); Mohan et al. (1987 ▶) For related structures, see: Xiang et al. (2004 ▶); Jin et al. (2004 ▶)

Experimental

Crystal data

6C9H10N4n class="Chemical">H2O M = 1255.73 Hexagonal, a = 23.0266 (15) Å c = 10.5190 (9) Å V = 4830.2 (6) Å3 Z = 3 Mo Kα radiation μ = 0.27 mm−1 T = 298 K 0.32 × 0.23 × 0.15 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2002 ▶) T min = 0.918, T max = 0.960 8946 measured reflections 2011 independent reflections 1647 reflections with I > 2σ(I) R int = 0.047

Refinement

R[F 2 > 2σ(F 2)] = 0.073 wR(F 2) = 0.204 S = 0.99 2011 reflections 137 parameters H-atom parameters constrained Δρmax = 0.70 e Å−3 Δρmin = −0.27 e Å−3 Data collection: SMART (Bruker, 2002 ▶); cell refinement: SAINT (Bruker, 2002 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808041056/sj2552sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808041056/sj2552Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
6C9H10N4S·H2ODx = 1.314 Mg m3
Mr = 1255.73Mo Kα radiation, λ = 0.71073 Å
Hexagonal, R3Cell parameters from 2375 reflections
Hall symbol: -R 3θ = 2.2–23.0°
a = 23.0266 (15) ŵ = 0.27 mm1
c = 10.5190 (9) ÅT = 298 K
V = 4830.2 (6) Å3Prism, colorless
Z = 30.32 × 0.23 × 0.15 mm
F(000) = 2004
Bruker SMART CCD area-detector diffractometer2011 independent reflections
Radiation source: fine-focus sealed tube1647 reflections with I > 2σ(I)
graphiteRint = 0.047
φ and ω scansθmax = 25.5°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Bruker, 2002)h = −27→27
Tmin = 0.918, Tmax = 0.960k = −27→20
8946 measured reflectionsl = −10→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.073Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.204H-atom parameters constrained
S = 0.99w = 1/[σ2(Fo2) + (0.1049P)2 + 19.9182P] where P = (Fo2 + 2Fc2)/3
2011 reflections(Δ/σ)max < 0.001
137 parametersΔρmax = 0.70 e Å3
0 restraintsΔρmin = −0.27 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
S11.03285 (6)0.89151 (5)0.71331 (11)0.0608 (4)
O1W0.645 (2)0.348 (3)0.356 (2)0.095 (12)0.166667
H1W0.66670.33330.39670.142*0.50
H2W0.64390.37790.31020.142*0.166667
N11.08197 (15)0.83742 (16)0.5409 (3)0.0520 (8)
N21.05881 (15)0.77523 (16)0.4828 (3)0.0501 (8)
N30.98055 (13)0.76822 (14)0.6086 (3)0.0381 (7)
N40.92266 (14)0.74747 (15)0.6827 (3)0.0457 (8)
H4A0.89180.74380.63180.055*
H4B0.91360.70900.71240.055*
C11.1062 (3)0.9644 (2)0.6516 (5)0.0809 (15)
H1A1.14420.95790.65780.121*
H1B1.11461.00310.70010.121*
H1C1.09890.97090.56420.121*
C21.03399 (18)0.83096 (18)0.6157 (3)0.0433 (9)
C30.99830 (17)0.73476 (18)0.5243 (3)0.0410 (8)
C40.95704 (18)0.66410 (18)0.4868 (3)0.0427 (8)
C50.8903 (2)0.6366 (2)0.4557 (4)0.0555 (10)
H50.86950.66220.46260.067*
C60.8543 (2)0.5711 (2)0.4142 (5)0.0726 (13)
H60.80920.55260.39350.087*
C70.8845 (3)0.5333 (2)0.4034 (5)0.0783 (14)
H70.86000.48920.37460.094*
C80.9510 (3)0.5600 (2)0.4349 (5)0.0689 (13)
H80.97140.53410.42760.083*
C90.9874 (2)0.6252 (2)0.4773 (4)0.0524 (10)
H91.03220.64310.49960.063*
U11U22U33U12U13U23
S10.0603 (7)0.0493 (6)0.0676 (7)0.0236 (5)0.0099 (5)−0.0071 (5)
O1W0.050 (15)0.09 (3)0.100 (18)0.001 (10)0.041 (12)−0.015 (14)
N10.0389 (17)0.0496 (19)0.060 (2)0.0166 (15)0.0097 (15)0.0029 (15)
N20.0428 (18)0.0512 (19)0.0565 (19)0.0236 (15)0.0112 (14)0.0018 (15)
N30.0322 (14)0.0406 (16)0.0436 (16)0.0197 (13)0.0060 (12)0.0054 (12)
N40.0378 (16)0.0474 (17)0.0534 (19)0.0225 (14)0.0097 (13)0.0090 (14)
C10.079 (3)0.044 (2)0.095 (4)0.012 (2)0.013 (3)−0.005 (2)
C20.0404 (19)0.0412 (19)0.048 (2)0.0203 (16)0.0030 (16)0.0040 (15)
C30.0404 (19)0.045 (2)0.0417 (19)0.0245 (16)0.0027 (15)0.0037 (15)
C40.048 (2)0.045 (2)0.0392 (19)0.0258 (17)0.0067 (15)0.0056 (15)
C50.050 (2)0.053 (2)0.069 (3)0.029 (2)−0.0036 (19)−0.005 (2)
C60.056 (3)0.057 (3)0.100 (4)0.025 (2)−0.012 (2)−0.012 (3)
C70.080 (3)0.048 (3)0.102 (4)0.028 (2)0.000 (3)−0.014 (2)
C80.081 (3)0.060 (3)0.081 (3)0.047 (3)0.010 (3)0.001 (2)
C90.055 (2)0.056 (2)0.054 (2)0.033 (2)0.0063 (18)0.0038 (18)
S1—C21.743 (4)N4—H4B0.8600
S1—C11.804 (5)C1—H1A0.9600
O1W—O1Wi0.88 (3)C1—H1B0.9600
O1W—O1Wii0.88 (3)C1—H1C0.9600
O1W—O1Wiii1.28 (4)C3—C41.470 (5)
O1W—O1Wiv1.28 (4)C4—C51.378 (5)
O1W—O1Wv1.55 (4)C4—C91.388 (5)
O1W—H1W0.8501C5—C61.379 (6)
O1W—H2W0.8500C5—H50.9300
N1—C21.302 (5)C6—C71.365 (7)
N1—N21.395 (5)C6—H60.9300
N2—C31.305 (5)C7—C81.375 (7)
N3—C21.352 (5)C7—H70.9300
N3—C31.364 (4)C8—C91.377 (6)
N3—N41.406 (4)C8—H80.9300
N4—H4A0.8601C9—H90.9300
C2—S1—C198.7 (2)S1—C1—H1C109.5
O1Wi—O1W—O1Wii93 (4)H1A—C1—H1C109.5
O1Wi—O1W—O1Wiii89.994 (4)H1B—C1—H1C109.5
O1Wii—O1W—O1Wiv89.995 (9)N1—C2—N3110.8 (3)
O1Wiii—O1W—O1Wiv60.000 (8)N1—C2—S1128.0 (3)
O1Wi—O1W—O1Wv55.4 (9)N3—C2—S1121.2 (3)
O1Wii—O1W—O1Wv55.4 (9)N2—C3—N3109.2 (3)
O1Wi—O1W—H1W85.0N2—C3—C4124.7 (3)
O1Wii—O1W—H1W85.0N3—C3—C4126.1 (3)
O1Wv—O1W—H1W48.2C5—C4—C9119.5 (4)
O1Wi—O1W—H2W67.8C5—C4—C3121.8 (3)
O1Wii—O1W—H2W108.1C9—C4—C3118.6 (3)
O1Wiii—O1W—H2W144.8C4—C5—C6119.9 (4)
O1Wiv—O1W—H2W110.0C4—C5—H5120.0
O1Wv—O1W—H2W117.3C6—C5—H5120.0
H1W—O1W—H2W149.9C7—C6—C5120.4 (4)
C2—N1—N2106.3 (3)C7—C6—H6119.8
C3—N2—N1108.1 (3)C5—C6—H6119.8
C2—N3—C3105.6 (3)C6—C7—C8120.1 (4)
C2—N3—N4122.3 (3)C6—C7—H7119.9
C3—N3—N4132.0 (3)C8—C7—H7119.9
N3—N4—H4A106.6C7—C8—C9120.1 (4)
N3—N4—H4B104.5C7—C8—H8120.0
H4A—N4—H4B111.3C9—C8—H8120.0
S1—C1—H1A109.5C8—C9—C4119.9 (4)
S1—C1—H1B109.5C8—C9—H9120.1
H1A—C1—H1B109.5C4—C9—H9120.1
C2—N1—N2—C30.4 (4)N4—N3—C3—C41.5 (6)
N2—N1—C2—N3−0.6 (4)N2—C3—C4—C5−135.3 (4)
N2—N1—C2—S1−179.7 (3)N3—C3—C4—C545.9 (5)
C3—N3—C2—N10.6 (4)N2—C3—C4—C941.9 (5)
N4—N3—C2—N1178.1 (3)N3—C3—C4—C9−137.0 (4)
C3—N3—C2—S1179.7 (2)C9—C4—C5—C6−0.7 (6)
N4—N3—C2—S1−2.7 (5)C3—C4—C5—C6176.4 (4)
C1—S1—C2—N111.9 (4)C4—C5—C6—C7−0.2 (7)
C1—S1—C2—N3−167.1 (3)C5—C6—C7—C80.6 (8)
N1—N2—C3—N3−0.1 (4)C6—C7—C8—C9−0.1 (8)
N1—N2—C3—C4−179.1 (3)C7—C8—C9—C4−0.8 (7)
C2—N3—C3—N2−0.3 (4)C5—C4—C9—C81.2 (6)
N4—N3—C3—N2−177.5 (3)C3—C4—C9—C8−176.0 (4)
C2—N3—C3—C4178.7 (3)
D—H···AD—HH···AD···AD—H···A
N4—H4A···N1vi0.862.303.127 (4)162
N4—H4B···N2vii0.862.213.060 (4)172
C5—H5···N1vi0.932.603.507 (6)167
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N4—H4A⋯N1i0.862.303.127 (4)162
N4—H4B⋯N2ii0.862.213.060 (4)172
C5—H5⋯N1i0.932.603.507 (6)167

Symmetry codes: (i) ; (ii) .

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