Literature DB >> 21582416

(E)-2-(4-Methoxy-phen-yl)-N-(2-pyrid-yl)-3-(2-pyridylamino)acrylamide.

Zhu-Ping Xiao1, Xiao-Chun Peng, Ying-Chun Wang.   

Abstract

In the title compound, C(20)H(18)N(4)O(2), the amino-acrylamide group makes a dihedral angles of 4.0 (1)° with the amino-bound pyridyl ring and 15.66 (12)° with the amide-bound pyridyl ring. The dihedral angle between the amino-acrylamide group and the pendant 4-methoxy-phenyl group is 71.22 (9)°. In the crystal structure, N-H⋯N hydrogen bonds and C-H⋯O and C-H⋯N inter-actions help to establish the packing. Intra-molecular C-H⋯O and C-H⋯(N,O) contacts also occur.

Entities:  

Year:  2009        PMID: 21582416      PMCID: PMC2968981          DOI: 10.1107/S1600536809007089

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the anti­bacteriological activity of enamines, see: Xiao et al. (2007 ▶, 2008 ▶).

Experimental

Crystal data

C20H18N4O2 M = 346.38 Monoclinic, a = 11.546 (2) Å b = 12.148 (2) Å c = 14.006 (3) Å β = 113.74 (3)° V = 1798.3 (6) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 293 K 0.30 × 0.10 × 0.10 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.975, T max = 0.992 3523 measured reflections 3523 independent reflections 1452 reflections with I > 2σ(I) 3 standard reflections every 200 reflections intensity decay: none

Refinement

R[F 2 > 2σ(F 2)] = 0.083 wR(F 2) = 0.200 S = 1.04 3523 reflections 235 parameters H-atom parameters constrained Δρmax = 0.16 e Å−3 Δρmin = −0.16 e Å−3 Data collection: CAD-4 Software (Enraf–Nonius, 1989 ▶); cell refinement: CAD-4 Software; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809007089/hb2919sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809007089/hb2919Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H18N4O2F(000) = 728
Mr = 346.38Dx = 1.279 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 25 reflections
a = 11.546 (2) Åθ = 9–12°
b = 12.148 (2) ŵ = 0.09 mm1
c = 14.006 (3) ÅT = 293 K
β = 113.74 (3)°Block, colorless
V = 1798.3 (6) Å30.30 × 0.10 × 0.10 mm
Z = 4
Enraf–Nonius CAD-4 diffractometer1452 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.0000
graphiteθmax = 26.0°, θmin = 1.9°
ω/2θ scansh = −14→13
Absorption correction: ψ scan (North et al., 1968)k = 0→14
Tmin = 0.975, Tmax = 0.992l = 0→17
3523 measured reflections3 standard reflections every 200 reflections
3523 independent reflections intensity decay: none
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.083Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.200H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0712P)2] where P = (Fo2 + 2Fc2)/3
3523 reflections(Δ/σ)max < 0.001
235 parametersΔρmax = 0.16 e Å3
0 restraintsΔρmin = −0.16 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.8670 (3)0.3253 (3)0.3474 (3)0.0628 (10)
H1A0.94830.32440.37250.075*
O11.3868 (3)0.5123 (3)0.3652 (3)0.1153 (14)
C11.4551 (5)0.4266 (5)0.3437 (5)0.137 (3)
H1B1.54340.44500.37180.206*
H1C1.42510.41680.26960.206*
H1D1.44320.35960.37500.206*
O20.6560 (2)0.5617 (3)0.1480 (2)0.0756 (9)
N20.6813 (3)0.2469 (3)0.3418 (3)0.0752 (11)
C21.2592 (4)0.5024 (5)0.3320 (4)0.0820 (15)
N30.8252 (3)0.6425 (3)0.1344 (2)0.0591 (9)
H3A0.90630.64710.16480.071*
C31.1876 (4)0.4216 (4)0.2676 (4)0.0764 (13)
H3B1.22540.36820.24200.092*
N40.8483 (3)0.7805 (3)0.0328 (3)0.0635 (9)
C41.0576 (4)0.4195 (3)0.2404 (3)0.0648 (11)
H4B1.00960.36450.19580.078*
C50.9974 (4)0.4961 (3)0.2771 (3)0.0568 (11)
C61.0728 (4)0.5774 (4)0.3409 (3)0.0743 (13)
H6A1.03560.63130.36650.089*
C71.2003 (4)0.5811 (4)0.3678 (4)0.0874 (15)
H7A1.24790.63730.41070.105*
C80.8599 (3)0.4900 (3)0.2477 (3)0.0545 (10)
C90.8061 (4)0.4077 (3)0.2814 (3)0.0583 (11)
H9A0.71830.40810.25660.070*
C100.8054 (4)0.2412 (3)0.3773 (3)0.0602 (11)
C110.8757 (4)0.1591 (4)0.4414 (4)0.0797 (15)
H11A0.96340.15850.46520.096*
C120.8136 (5)0.0787 (4)0.4691 (4)0.1026 (18)
H12A0.85880.02160.51220.123*
C130.6855 (5)0.0816 (4)0.4340 (4)0.0955 (17)
H13A0.64160.02680.45180.115*
C140.6240 (5)0.1666 (4)0.3725 (4)0.0884 (16)
H14A0.53650.16970.34990.106*
C150.7711 (4)0.5672 (3)0.1737 (3)0.0537 (10)
C160.7672 (4)0.7143 (3)0.0506 (3)0.0559 (10)
C170.6370 (4)0.7165 (4)−0.0105 (3)0.0671 (12)
H17A0.58120.67160.00450.080*
C180.5952 (5)0.7878 (4)−0.0932 (4)0.0870 (15)
H18A0.50940.7909−0.13620.104*
C190.6782 (5)0.8542 (4)−0.1129 (4)0.0860 (16)
H19A0.65050.9018−0.16970.103*
C200.8027 (4)0.8489 (4)−0.0471 (4)0.0811 (14)
H20A0.85880.8961−0.05910.097*
U11U22U33U12U13U23
N10.0472 (19)0.066 (2)0.072 (2)0.0045 (18)0.0203 (17)0.011 (2)
O10.056 (2)0.122 (3)0.161 (4)0.003 (2)0.036 (2)0.026 (3)
C10.066 (3)0.138 (6)0.215 (7)0.023 (4)0.064 (4)0.051 (5)
O20.0566 (18)0.090 (2)0.082 (2)0.0110 (16)0.0303 (16)0.0173 (18)
N20.055 (2)0.079 (3)0.086 (3)−0.011 (2)0.023 (2)0.018 (2)
C20.046 (3)0.091 (4)0.100 (4)0.005 (3)0.020 (3)0.032 (3)
N30.0523 (19)0.056 (2)0.059 (2)0.0026 (17)0.0119 (17)0.0122 (18)
C30.070 (3)0.073 (3)0.092 (4)0.011 (3)0.038 (3)0.015 (3)
N40.062 (2)0.070 (2)0.056 (2)0.000 (2)0.0210 (18)0.009 (2)
C40.065 (3)0.056 (3)0.067 (3)0.000 (2)0.020 (2)0.002 (2)
C50.059 (2)0.051 (3)0.054 (3)0.005 (2)0.015 (2)0.005 (2)
C60.064 (3)0.077 (3)0.075 (3)0.009 (3)0.021 (2)−0.004 (3)
C70.066 (3)0.083 (4)0.094 (4)−0.007 (3)0.013 (3)−0.008 (3)
C80.052 (2)0.050 (3)0.057 (3)0.006 (2)0.0169 (19)0.003 (2)
C90.056 (2)0.050 (2)0.059 (3)0.007 (2)0.012 (2)0.000 (2)
C100.057 (3)0.063 (3)0.057 (3)−0.015 (2)0.019 (2)0.004 (2)
C110.066 (3)0.080 (3)0.084 (3)−0.001 (3)0.021 (3)0.034 (3)
C120.093 (4)0.098 (4)0.101 (4)−0.008 (3)0.023 (3)0.040 (4)
C130.095 (4)0.081 (4)0.095 (4)−0.022 (3)0.023 (3)0.031 (3)
C140.067 (3)0.096 (4)0.098 (4)−0.021 (3)0.030 (3)0.014 (3)
C150.055 (2)0.059 (3)0.047 (2)0.004 (2)0.021 (2)−0.003 (2)
C160.057 (2)0.056 (3)0.054 (3)0.010 (2)0.022 (2)0.003 (2)
C170.060 (3)0.073 (3)0.062 (3)0.003 (2)0.017 (2)0.009 (3)
C180.066 (3)0.106 (4)0.068 (3)0.016 (3)0.005 (3)0.017 (3)
C190.074 (3)0.103 (4)0.077 (4)0.017 (3)0.025 (3)0.039 (3)
C200.075 (3)0.097 (4)0.071 (3)0.006 (3)0.029 (3)0.023 (3)
N1—C91.352 (4)C5—C81.472 (5)
N1—C101.402 (5)C6—C71.366 (6)
N1—H1A0.8600C6—H6A0.9300
O1—C21.360 (5)C7—H7A0.9300
O1—C11.409 (6)C8—C91.359 (5)
C1—H1B0.9600C8—C151.466 (5)
C1—H1C0.9600C9—H9A0.9300
C1—H1D0.9600C10—C111.368 (5)
O2—C151.231 (4)C11—C121.358 (6)
N2—C101.315 (5)C11—H11A0.9300
N2—C141.343 (5)C12—C131.358 (6)
C2—C31.365 (6)C12—H12A0.9300
C2—C71.379 (6)C13—C141.348 (6)
N3—C151.344 (5)C13—H13A0.9300
N3—C161.398 (5)C14—H14A0.9300
N3—H3A0.8600C16—C171.400 (5)
C3—C41.393 (5)C17—C181.368 (6)
C3—H3B0.9300C17—H17A0.9300
N4—C201.321 (5)C18—C191.364 (6)
N4—C161.332 (5)C18—H18A0.9300
C4—C51.379 (5)C19—C201.361 (6)
C4—H4B0.9300C19—H19A0.9300
C5—C61.380 (5)C20—H20A0.9300
C9—N1—C10123.8 (3)N1—C9—C8126.7 (4)
C9—N1—H1A118.1N1—C9—H9A116.7
C10—N1—H1A118.1C8—C9—H9A116.7
C2—O1—C1119.0 (5)N2—C10—C11123.7 (4)
O1—C1—H1B109.5N2—C10—N1117.1 (4)
O1—C1—H1C109.5C11—C10—N1119.2 (4)
H1B—C1—H1C109.5C12—C11—C10118.0 (4)
O1—C1—H1D109.5C12—C11—H11A121.0
H1B—C1—H1D109.5C10—C11—H11A121.0
H1C—C1—H1D109.5C11—C12—C13120.1 (5)
C10—N2—C14116.3 (4)C11—C12—H12A120.0
O1—C2—C3125.0 (5)C13—C12—H12A120.0
O1—C2—C7116.1 (5)C14—C13—C12117.9 (5)
C3—C2—C7118.8 (4)C14—C13—H13A121.0
C15—N3—C16128.6 (4)C12—C13—H13A121.0
C15—N3—H3A115.7N2—C14—C13124.0 (5)
C16—N3—H3A115.7N2—C14—H14A118.0
C2—C3—C4119.6 (5)C13—C14—H14A118.0
C2—C3—H3B120.2O2—C15—N3122.9 (4)
C4—C3—H3B120.2O2—C15—C8122.5 (4)
C20—N4—C16117.9 (4)N3—C15—C8114.6 (4)
C5—C4—C3122.4 (4)N4—C16—N3113.5 (3)
C5—C4—H4B118.8N4—C16—C17122.5 (4)
C3—C4—H4B118.8N3—C16—C17124.0 (4)
C4—C5—C6116.3 (4)C18—C17—C16117.1 (4)
C4—C5—C8120.7 (4)C18—C17—H17A121.4
C6—C5—C8123.0 (4)C16—C17—H17A121.4
C7—C6—C5122.0 (4)C19—C18—C17120.6 (4)
C7—C6—H6A119.0C19—C18—H18A119.7
C5—C6—H6A119.0C17—C18—H18A119.7
C6—C7—C2120.8 (5)C20—C19—C18118.2 (5)
C6—C7—H7A119.6C20—C19—H19A120.9
C2—C7—H7A119.6C18—C19—H19A120.9
C9—C8—C15115.4 (4)N4—C20—C19123.7 (5)
C9—C8—C5122.2 (4)N4—C20—H20A118.1
C15—C8—C5122.3 (4)C19—C20—H20A118.1
C1—O1—C2—C3−8.5 (8)N2—C10—C11—C120.5 (7)
C1—O1—C2—C7171.2 (5)N1—C10—C11—C12−180.0 (4)
O1—C2—C3—C4179.1 (4)C10—C11—C12—C13−0.4 (8)
C7—C2—C3—C4−0.6 (7)C11—C12—C13—C14−0.6 (9)
C2—C3—C4—C5−0.7 (7)C10—N2—C14—C13−1.6 (7)
C3—C4—C5—C61.5 (6)C12—C13—C14—N21.7 (9)
C3—C4—C5—C8−179.1 (4)C16—N3—C15—O2−10.3 (6)
C4—C5—C6—C7−1.0 (6)C16—N3—C15—C8168.0 (4)
C8—C5—C6—C7179.6 (4)C9—C8—C15—O23.7 (6)
C5—C6—C7—C2−0.3 (7)C5—C8—C15—O2179.2 (4)
O1—C2—C7—C6−178.6 (4)C9—C8—C15—N3−174.7 (3)
C3—C2—C7—C61.2 (7)C5—C8—C15—N30.8 (5)
C4—C5—C8—C968.4 (5)C20—N4—C16—N3177.8 (4)
C6—C5—C8—C9−112.2 (5)C20—N4—C16—C17−1.4 (6)
C4—C5—C8—C15−106.8 (4)C15—N3—C16—N4178.7 (4)
C6—C5—C8—C1572.6 (5)C15—N3—C16—C17−2.1 (6)
C10—N1—C9—C8−178.4 (4)N4—C16—C17—C182.4 (6)
C15—C8—C9—N1178.4 (4)N3—C16—C17—C18−176.8 (4)
C5—C8—C9—N12.9 (6)C16—C17—C18—C19−1.0 (7)
C14—N2—C10—C110.5 (7)C17—C18—C19—C20−1.2 (8)
C14—N2—C10—N1−179.0 (4)C16—N4—C20—C19−1.0 (7)
C9—N1—C10—N2−3.0 (6)C18—C19—C20—N42.3 (8)
C9—N1—C10—C11177.5 (4)
D—H···AD—HH···AD···AD—H···A
N1—H1A···N4i0.862.253.079 (5)163
C9—H9A···O20.932.332.718 (5)104
C9—H9A···N20.932.422.754 (6)101
C17—H17A···O20.932.272.850 (5)120
C11—H11A···N4i0.932.623.396 (6)141
C14—H14A···O2ii0.932.593.378 (5)143
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯N4i0.862.253.079 (5)163
C9—H9A⋯O20.932.332.718 (5)104
C9—H9A⋯N20.932.422.754 (6)101
C17—H17A⋯O20.932.272.850 (5)120
C11—H11A⋯N4i0.932.623.396 (6)141
C14—H14A⋯O2ii0.932.593.378 (5)143

Symmetry codes: (i) ; (ii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Enamines as novel antibacterials and their structure-activity relationships.

Authors:  Zhu-Ping Xiao; Rui-Qin Fang; Huan-Qiu Li; Jia-Yu Xue; Yi Zheng; Hai-Liang Zhu
Journal:  Eur J Med Chem       Date:  2007-12-08       Impact factor: 6.514

3.  Synthesis, structure, and structure-activity relationship analysis of enamines as potential antibacterials.

Authors:  Zhu-Ping Xiao; Jia-Yu Xue; Shu-Hua Tan; Huan-Qiu Li; Hai-Liang Zhu
Journal:  Bioorg Med Chem       Date:  2007-03-24       Impact factor: 3.641

  3 in total

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