| Literature DB >> 21582404 |
Jia-Tian Wang, Xin Xiao, Yun-Qian Zhang, Sai-Feng Xue, Qian-Jiang Zhu.
Abstract
In the crystal of the title compound, [Ni(NO(3))(2)(C(18)H(10)N(4))(H(2)O)]·H(2)O, the Ni(II) ion is coordinated in a distorted octahedral geometry by two N atoms of the 1,10-phenanthroline moiety of the ligand, three O atoms from two nitrate anions and an O atom from one water mol-ecule. O-H⋯O hydrogen bonds between the coordinated and the solvent water molecules and between these water molecules and the nitrate O atoms help to establish the crystal packing.Entities:
Year: 2009 PMID: 21582404 PMCID: PMC2969060 DOI: 10.1107/S1600536809011441
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Ni(NO3)2(C18H10N4)(H2O)]·H2O | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 3338 reflections |
| θ = 1.5–25.0° | |
| µ = 1.08 mm−1 | |
| β = 109.005 (6)° | Prism, green |
| 0.24 × 0.21 × 0.19 mm | |
| Bruker SMART CCD area-detector diffractometer | 3338 independent reflections |
| Radiation source: fine-focus sealed tube | 2255 reflections with |
| graphite | |
| φ and ω scans | θmax = 25.0°, θmin = 1.5° |
| Absorption correction: multi-scan ( | |
| 12703 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3338 reflections | (Δ/σ)max < 0.001 |
| 314 parameters | Δρmax = 1.02 e Å−3 |
| 4 restraints | Δρmin = −0.35 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1W | 0.4569 (6) | 0.23839 (11) | 0.3617 (4) | 0.0500 (8) | |
| O2W | −0.2513 (6) | 0.25558 (15) | 0.2685 (5) | 0.0748 (11) | |
| H1WA | 0.355 (5) | 0.246 (2) | 0.298 (5) | 0.11 (2)* | |
| H2WA | −0.140 (4) | 0.246 (2) | 0.313 (6) | 0.10 (2)* | |
| H2WB | −0.229 (10) | 0.271 (2) | 0.205 (5) | 0.12 (3)* | |
| H1WB | 0.559 (5) | 0.2429 (19) | 0.343 (6) | 0.08 (2)* | |
| C1 | 0.2027 (6) | −0.07484 (15) | 0.0816 (4) | 0.0381 (10) | |
| C2 | 0.1687 (7) | −0.12547 (15) | 0.0792 (5) | 0.0491 (12) | |
| H2 | 0.1650 | −0.1412 | 0.1607 | 0.059* | |
| C3 | 0.1418 (7) | −0.15036 (16) | −0.0432 (5) | 0.0509 (12) | |
| H3 | 0.1195 | −0.1832 | −0.0441 | 0.061* | |
| C4 | 0.1467 (6) | −0.12769 (16) | −0.1693 (5) | 0.0473 (11) | |
| H4 | 0.1275 | −0.1455 | −0.2518 | 0.057* | |
| C5 | 0.1798 (6) | −0.07968 (15) | −0.1691 (4) | 0.0437 (11) | |
| H5 | 0.1829 | −0.0648 | −0.2521 | 0.052* | |
| C6 | 0.2095 (6) | −0.05199 (15) | −0.0451 (4) | 0.0389 (10) | |
| C7 | 0.2656 (6) | 0.02039 (14) | 0.0708 (4) | 0.0367 (10) | |
| C8 | 0.3059 (6) | 0.07219 (14) | 0.0721 (4) | 0.0361 (10) | |
| C9 | 0.3115 (6) | 0.09755 (15) | −0.0475 (4) | 0.0435 (11) | |
| H9 | 0.2845 | 0.0820 | −0.1345 | 0.052* | |
| C10 | 0.3567 (7) | 0.14525 (15) | −0.0365 (4) | 0.0448 (11) | |
| H10 | 0.3597 | 0.1624 | −0.1159 | 0.054* | |
| C11 | 0.3984 (6) | 0.16799 (15) | 0.0953 (4) | 0.0418 (11) | |
| H11 | 0.4364 | 0.2000 | 0.1031 | 0.050* | |
| C12 | 0.3390 (5) | 0.09756 (13) | 0.1985 (4) | 0.0331 (9) | |
| C13 | 0.3222 (5) | 0.07486 (14) | 0.3249 (4) | 0.0325 (9) | |
| C14 | 0.3228 (6) | 0.08498 (15) | 0.5558 (4) | 0.0434 (11) | |
| H14 | 0.3396 | 0.1046 | 0.6345 | 0.052* | |
| C15 | 0.2730 (7) | 0.03711 (15) | 0.5646 (4) | 0.0478 (12) | |
| H15 | 0.2554 | 0.0254 | 0.6470 | 0.057* | |
| C16 | 0.2501 (6) | 0.00718 (15) | 0.4488 (4) | 0.0435 (11) | |
| H16 | 0.2178 | −0.0250 | 0.4524 | 0.052* | |
| C17 | 0.2766 (6) | 0.02637 (14) | 0.3261 (4) | 0.0343 (10) | |
| C18 | 0.2550 (6) | −0.00271 (14) | 0.1970 (4) | 0.0360 (10) | |
| N1 | 0.2418 (5) | −0.00420 (12) | −0.0496 (3) | 0.0386 (8) | |
| N2 | 0.2264 (5) | −0.04985 (12) | 0.2022 (3) | 0.0393 (8) | |
| N3 | 0.3856 (5) | 0.14541 (11) | 0.2110 (3) | 0.0364 (8) | |
| N4 | 0.3473 (5) | 0.10402 (12) | 0.4398 (3) | 0.0371 (8) | |
| N5 | 0.8338 (6) | 0.13711 (13) | 0.5559 (4) | 0.0462 (9) | |
| N6 | 0.1912 (5) | 0.21527 (13) | 0.5388 (4) | 0.0448 (9) | |
| O1 | 0.7783 (5) | 0.10649 (12) | 0.4602 (3) | 0.0641 (10) | |
| O2 | 0.9965 (4) | 0.13624 (12) | 0.6460 (4) | 0.0659 (10) | |
| O3 | 0.7158 (4) | 0.17099 (11) | 0.5592 (3) | 0.0546 (9) | |
| O4 | 0.0965 (5) | 0.20873 (11) | 0.4119 (3) | 0.0591 (9) | |
| O5 | 0.3600 (4) | 0.19605 (10) | 0.5873 (3) | 0.0455 (8) | |
| O6 | 0.1315 (5) | 0.23972 (12) | 0.6206 (4) | 0.0602 (9) | |
| Ni1 | 0.42395 (7) | 0.170749 (17) | 0.40994 (5) | 0.0345 (2) |
| O1W | 0.065 (3) | 0.0339 (19) | 0.049 (2) | −0.0001 (18) | 0.016 (2) | −0.0016 (15) |
| O2W | 0.057 (3) | 0.073 (3) | 0.090 (3) | 0.008 (2) | 0.018 (2) | 0.035 (2) |
| C1 | 0.041 (2) | 0.033 (2) | 0.043 (2) | −0.0042 (19) | 0.0175 (19) | −0.007 (2) |
| C2 | 0.064 (3) | 0.034 (3) | 0.054 (3) | −0.003 (2) | 0.026 (2) | 0.001 (2) |
| C3 | 0.062 (3) | 0.029 (2) | 0.067 (3) | −0.008 (2) | 0.029 (3) | −0.011 (2) |
| C4 | 0.055 (3) | 0.041 (3) | 0.048 (3) | −0.006 (2) | 0.020 (2) | −0.011 (2) |
| C5 | 0.052 (3) | 0.037 (3) | 0.042 (2) | −0.008 (2) | 0.015 (2) | −0.005 (2) |
| C6 | 0.038 (2) | 0.034 (3) | 0.044 (2) | −0.0006 (19) | 0.0121 (19) | −0.007 (2) |
| C7 | 0.041 (2) | 0.033 (2) | 0.035 (2) | 0.0029 (18) | 0.0112 (18) | −0.0014 (18) |
| C8 | 0.042 (2) | 0.031 (2) | 0.035 (2) | 0.0029 (19) | 0.0113 (18) | 0.0000 (18) |
| C9 | 0.058 (3) | 0.037 (3) | 0.033 (2) | −0.002 (2) | 0.012 (2) | −0.0036 (19) |
| C10 | 0.069 (3) | 0.029 (2) | 0.042 (2) | 0.001 (2) | 0.025 (2) | 0.005 (2) |
| C11 | 0.053 (3) | 0.029 (2) | 0.045 (3) | −0.001 (2) | 0.018 (2) | 0.002 (2) |
| C12 | 0.035 (2) | 0.026 (2) | 0.037 (2) | 0.0036 (18) | 0.0107 (18) | 0.0009 (18) |
| C13 | 0.034 (2) | 0.029 (2) | 0.034 (2) | 0.0008 (18) | 0.0113 (17) | −0.0007 (18) |
| C14 | 0.055 (3) | 0.039 (3) | 0.039 (2) | 0.003 (2) | 0.019 (2) | −0.005 (2) |
| C15 | 0.071 (3) | 0.035 (3) | 0.043 (2) | 0.000 (2) | 0.027 (2) | 0.002 (2) |
| C16 | 0.062 (3) | 0.030 (2) | 0.045 (3) | −0.003 (2) | 0.026 (2) | −0.003 (2) |
| C17 | 0.037 (2) | 0.033 (2) | 0.036 (2) | 0.0023 (18) | 0.0162 (18) | −0.0001 (18) |
| C18 | 0.040 (2) | 0.030 (2) | 0.038 (2) | 0.0006 (18) | 0.0131 (18) | −0.0015 (19) |
| N1 | 0.046 (2) | 0.034 (2) | 0.0349 (19) | −0.0001 (16) | 0.0117 (16) | −0.0026 (16) |
| N2 | 0.052 (2) | 0.029 (2) | 0.0410 (19) | 0.0008 (16) | 0.0214 (17) | −0.0016 (16) |
| N3 | 0.041 (2) | 0.0288 (19) | 0.041 (2) | −0.0005 (15) | 0.0146 (16) | −0.0008 (16) |
| N4 | 0.044 (2) | 0.032 (2) | 0.0355 (19) | 0.0018 (16) | 0.0143 (16) | −0.0030 (16) |
| N5 | 0.057 (3) | 0.039 (2) | 0.048 (2) | 0.001 (2) | 0.025 (2) | 0.0066 (19) |
| N6 | 0.048 (2) | 0.035 (2) | 0.052 (2) | −0.0032 (18) | 0.018 (2) | −0.0110 (18) |
| O1 | 0.084 (3) | 0.055 (2) | 0.056 (2) | 0.0090 (19) | 0.0272 (19) | −0.0098 (18) |
| O2 | 0.043 (2) | 0.080 (3) | 0.069 (2) | 0.0116 (18) | 0.0104 (18) | 0.0144 (19) |
| O3 | 0.0478 (19) | 0.0411 (19) | 0.068 (2) | 0.0069 (16) | 0.0097 (16) | −0.0122 (16) |
| O4 | 0.057 (2) | 0.064 (2) | 0.0475 (19) | 0.0018 (17) | 0.0046 (16) | −0.0121 (16) |
| O5 | 0.0441 (18) | 0.0402 (18) | 0.0500 (18) | 0.0038 (14) | 0.0123 (14) | −0.0040 (14) |
| O6 | 0.062 (2) | 0.055 (2) | 0.071 (2) | 0.0023 (17) | 0.0325 (18) | −0.0205 (18) |
| Ni1 | 0.0469 (4) | 0.0241 (3) | 0.0321 (3) | −0.0013 (2) | 0.0122 (2) | −0.0036 (2) |
| O1W—Ni1 | 1.979 (3) | C11—H11 | 0.9300 |
| O1W—H1WA | 0.83 (2) | C12—N3 | 1.372 (5) |
| O1W—H1WB | 0.83 (2) | C12—C13 | 1.448 (5) |
| O2W—H2WA | 0.83 (2) | C13—N4 | 1.366 (5) |
| O2W—H2WB | 0.83 (2) | C13—C17 | 1.393 (5) |
| C1—N2 | 1.349 (5) | C14—N4 | 1.334 (5) |
| C1—C6 | 1.427 (6) | C14—C15 | 1.393 (6) |
| C1—C2 | 1.432 (6) | C14—H14 | 0.9300 |
| C2—C3 | 1.359 (6) | C15—C16 | 1.388 (6) |
| C2—H2 | 0.9300 | C15—H15 | 0.9300 |
| C3—C4 | 1.416 (6) | C16—C17 | 1.402 (5) |
| C3—H3 | 0.9300 | C16—H16 | 0.9300 |
| C4—C5 | 1.360 (6) | C17—C18 | 1.484 (5) |
| C4—H4 | 0.9300 | C18—N2 | 1.334 (5) |
| C5—C6 | 1.411 (5) | N3—Ni1 | 2.033 (3) |
| C5—H5 | 0.9300 | N4—Ni1 | 1.992 (3) |
| C6—N1 | 1.356 (5) | N5—O2 | 1.233 (4) |
| C7—N1 | 1.341 (5) | N5—O1 | 1.244 (4) |
| C7—C18 | 1.436 (5) | N5—O3 | 1.286 (4) |
| C7—C8 | 1.472 (5) | N6—O4 | 1.240 (4) |
| C8—C12 | 1.393 (5) | N6—O4 | 1.240 (4) |
| C8—C9 | 1.396 (5) | N6—O6 | 1.244 (4) |
| C9—C10 | 1.366 (6) | N6—O5 | 1.285 (4) |
| C9—H9 | 0.9300 | O3—Ni1 | 2.164 (3) |
| C10—C11 | 1.399 (6) | O4—O4 | 0.000 (6) |
| C10—H10 | 0.9300 | O5—Ni1 | 2.090 (3) |
| C11—N3 | 1.342 (5) | ||
| Ni1—O1W—H1WA | 106 (4) | N4—C14—H14 | 118.4 |
| Ni1—O1W—H1WB | 113 (4) | C15—C14—H14 | 118.4 |
| H1WA—O1W—H1WB | 116 (6) | C16—C15—C14 | 119.1 (4) |
| H2WA—O2W—H2WB | 100 (6) | C16—C15—H15 | 120.4 |
| N2—C1—C6 | 121.6 (4) | C14—C15—H15 | 120.4 |
| N2—C1—C2 | 119.7 (4) | C15—C16—C17 | 118.7 (4) |
| C6—C1—C2 | 118.7 (4) | C15—C16—H16 | 120.7 |
| C3—C2—C1 | 119.5 (4) | C17—C16—H16 | 120.7 |
| C3—C2—H2 | 120.3 | C13—C17—C16 | 118.6 (4) |
| C1—C2—H2 | 120.3 | C13—C17—C18 | 118.7 (3) |
| C2—C3—C4 | 121.9 (4) | C16—C17—C18 | 122.6 (4) |
| C2—C3—H3 | 119.1 | N2—C18—C7 | 121.9 (4) |
| C4—C3—H3 | 119.1 | N2—C18—C17 | 118.6 (3) |
| C5—C4—C3 | 119.6 (4) | C7—C18—C17 | 119.5 (4) |
| C5—C4—H4 | 120.2 | C7—N1—C6 | 116.5 (3) |
| C3—C4—H4 | 120.2 | C18—N2—C1 | 116.8 (3) |
| C4—C5—C6 | 121.1 (4) | C11—N3—C12 | 117.5 (3) |
| C4—C5—H5 | 119.5 | C11—N3—Ni1 | 130.3 (3) |
| C6—C5—H5 | 119.5 | C12—N3—Ni1 | 112.2 (2) |
| N1—C6—C5 | 119.2 (4) | C14—N4—C13 | 117.9 (3) |
| N1—C6—C1 | 121.6 (4) | C14—N4—Ni1 | 128.6 (3) |
| C5—C6—C1 | 119.3 (4) | C13—N4—Ni1 | 113.5 (3) |
| N1—C7—C18 | 121.6 (4) | O2—N5—O1 | 122.7 (4) |
| N1—C7—C8 | 118.5 (4) | O2—N5—O3 | 119.3 (4) |
| C18—C7—C8 | 119.9 (3) | O1—N5—O3 | 118.0 (4) |
| C12—C8—C9 | 117.9 (4) | O4—N6—O4 | 0.0 (4) |
| C12—C8—C7 | 118.8 (4) | O4—N6—O6 | 123.3 (4) |
| C9—C8—C7 | 123.4 (4) | O4—N6—O6 | 123.3 (4) |
| C10—C9—C8 | 119.9 (4) | O4—N6—O5 | 118.0 (4) |
| C10—C9—H9 | 120.1 | O4—N6—O5 | 118.0 (4) |
| C8—C9—H9 | 120.1 | O6—N6—O5 | 118.7 (4) |
| C9—C10—C11 | 119.3 (4) | N5—O3—Ni1 | 119.9 (3) |
| C9—C10—H10 | 120.4 | O4—O4—N6 | 0(10) |
| C11—C10—H10 | 120.4 | N6—O5—Ni1 | 105.9 (2) |
| N3—C11—C10 | 122.5 (4) | O1W—Ni1—N4 | 170.98 (15) |
| N3—C11—H11 | 118.7 | O1W—Ni1—N3 | 94.82 (14) |
| C10—C11—H11 | 118.7 | N4—Ni1—N3 | 82.22 (13) |
| N3—C12—C8 | 122.7 (4) | O1W—Ni1—O5 | 87.80 (13) |
| N3—C12—C13 | 115.7 (3) | N4—Ni1—O5 | 92.19 (12) |
| C8—C12—C13 | 121.5 (4) | N3—Ni1—O5 | 160.31 (12) |
| N4—C13—C17 | 122.5 (4) | O1W—Ni1—O3 | 89.62 (14) |
| N4—C13—C12 | 116.2 (3) | N4—Ni1—O3 | 99.32 (12) |
| C17—C13—C12 | 121.3 (3) | N3—Ni1—O3 | 117.52 (13) |
| N4—C14—C15 | 123.1 (4) | O5—Ni1—O3 | 81.96 (12) |
| H··· | ||||
| O1W—H1WA···O6i | 0.83 (2) | 2.02 (2) | 2.839 (5) | 170 (6) |
| O1W—H1WB···O2Wii | 0.83 (2) | 1.81 (2) | 2.630 (6) | 169 (6) |
| O2W—H2WB···O3iii | 0.83 (2) | 2.11 (4) | 2.873 (5) | 153 (7) |
| O2W—H2WA···O4 | 0.83 (2) | 1.98 (2) | 2.798 (5) | 167 (6) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O1 | 0.83 (2) | 2.02 (2) | 2.839 (5) | 170 (6) |
| O1 | 0.83 (2) | 1.81 (2) | 2.630 (6) | 169 (6) |
| O2 | 0.83 (2) | 2.11 (4) | 2.873 (5) | 153 (7) |
| O2 | 0.83 (2) | 1.98 (2) | 2.798 (5) | 167 (6) |
Symmetry codes: (i) ; (ii) ; (iii) .