Literature DB >> 21582400

Tetra-aqua-bis[3-(2-pyridylsulfan-yl)propionato N-oxide]nickel(II).

B Ravindran Durai Nayagam, Samuel Robinson Jebas, J P Edward Rajkumar, Dieter Schollmeyer.   

Abstract

In the centrosymmetric title compound, [Ni(C(8)H(8)NO(3)S)(2)(H(2)O)(4)], the Ni(II) ion, which lies on an inversion centre, is six coordinated by four water mol-ecules and two propionate O atoms from two 2-pyridylsulfanylpropionate N-oxide ligands, forming a slightly distorted octa-hedral geometry. An intra-molecular O-H⋯O hydrogen bond stabilizes the mol-ecular conformation. The crystal packing is consolidated by inter-molecular O-H⋯O and C-H⋯O hydrogen bonding.

Entities:  

Year:  2009        PMID: 21582400      PMCID: PMC2968857          DOI: 10.1107/S1600536809011283

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activities of N-oxide derivatives, see: Bovin et al. (1992 ▶); Katsuyuki et al. (1991 ▶). Leonard et al. (1955 ▶); Lobana & Bhatia (1989 ▶); Symons & West (1985 ▶). For related literature, see: Jebas et al. (2005 ▶); Ravindran et al. (2008 ▶).

Experimental

Crystal data

[Ni(C8H8NO3S)2(H2O)4] M = 527.20 Triclinic, a = 4.8155 (5) Å b = 8.7650 (10) Å c = 12.9560 (15) Å α = 86.400 (2)° β = 79.501 (2)° γ = 84.929 (2)° V = 534.98 (10) Å3 Z = 1 Mo Kα radiation μ = 1.16 mm−1 T = 173 K 0.35 × 0.28 × 0.07 mm

Data collection

Bruker SMART APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2008 ▶) T min = 0.405, T max = 0.492 (expected range = 0.759–0.922) 9627 measured reflections 2615 independent reflections 2501 reflections with I > 2σ(I) R int = 0.017

Refinement

R[F 2 > 2σ(F 2)] = 0.020 wR(F 2) = 0.055 S = 1.05 2615 reflections 142 parameters H-atom parameters constrained Δρmax = 0.40 e Å−3 Δρmin = −0.36 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: APEX2; data reduction: APEX2; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809011283/bt2915sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809011283/bt2915Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ni(C8H8NO3S)2(H2O)4]Z = 1
Mr = 527.20F(000) = 274
Triclinic, P1Dx = 1.636 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71069 Å
a = 4.8155 (5) ÅCell parameters from 6946 reflections
b = 8.765 (1) Åθ = 2.3–28.2°
c = 12.9560 (15) ŵ = 1.16 mm1
α = 86.400 (2)°T = 173 K
β = 79.501 (2)°Plate, green
γ = 84.929 (2)°0.35 × 0.28 × 0.07 mm
V = 534.98 (10) Å3
Bruker SMART APEXII CCD diffractometer2615 independent reflections
Radiation source: sealed Tube2501 reflections with I > 2σ(I)
graphiteRint = 0.017
CCD scanθmax = 28.2°, θmin = 1.6°
Absorption correction: multi-scan (SADABS; Sheldrick, 2008)h = −6→6
Tmin = 0.405, Tmax = 0.492k = −11→11
9627 measured reflectionsl = −17→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.020Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.055H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0294P)2 + 0.2035P] where P = (Fo2 + 2Fc2)/3
2615 reflections(Δ/σ)max < 0.001
142 parametersΔρmax = 0.40 e Å3
0 restraintsΔρmin = −0.36 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Ni10.50000.50000.50000.01405 (6)
N11.2267 (2)0.77325 (12)−0.20598 (8)0.0197 (2)
C21.0696 (2)0.79224 (13)−0.10776 (8)0.0167 (2)
C30.8347 (3)0.89789 (14)−0.09608 (9)0.0212 (2)
H30.72290.9119−0.02850.025*
C40.7627 (3)0.98279 (15)−0.18222 (10)0.0254 (3)
H40.60271.0555−0.17410.031*
C50.9266 (3)0.96061 (16)−0.28069 (10)0.0291 (3)
H50.87941.0180−0.34060.035*
C61.1567 (3)0.85564 (16)−0.29110 (10)0.0274 (3)
H61.26850.8403−0.35860.033*
O71.44740 (19)0.67209 (11)−0.21521 (7)0.0264 (2)
S81.19805 (6)0.67388 (3)−0.01121 (2)0.01821 (7)
C90.9142 (2)0.70873 (14)0.09994 (8)0.0176 (2)
H9A0.88800.81940.11360.021*
H9B0.73440.67650.08480.021*
C100.9942 (2)0.61698 (13)0.19529 (8)0.0177 (2)
H10A1.02680.50710.17960.021*
H10B1.17300.65110.21000.021*
C110.7643 (2)0.63642 (13)0.29187 (8)0.0159 (2)
O120.55540 (18)0.72858 (11)0.28796 (7)0.02341 (18)
O130.80467 (17)0.55410 (10)0.37393 (6)0.01937 (17)
O140.26378 (17)0.70791 (10)0.47964 (6)0.01973 (17)
H14A0.32640.72710.41790.030*
H14B0.09520.70070.48490.030*
O150.71999 (16)0.60521 (10)0.59458 (6)0.01836 (17)
H15A0.62070.62520.65140.028*
H15B0.85960.55220.60920.028*
U11U22U33U12U13U23
Ni10.01095 (10)0.01935 (11)0.01075 (10)0.00213 (7)−0.00158 (7)0.00208 (7)
N10.0229 (5)0.0205 (5)0.0145 (4)−0.0001 (4)−0.0011 (4)−0.0011 (4)
C20.0191 (5)0.0181 (5)0.0127 (5)−0.0037 (4)−0.0019 (4)−0.0001 (4)
C30.0223 (5)0.0220 (6)0.0178 (5)0.0001 (4)−0.0012 (4)0.0002 (4)
C40.0277 (6)0.0222 (6)0.0259 (6)0.0029 (5)−0.0068 (5)0.0018 (5)
C50.0399 (7)0.0273 (6)0.0199 (6)0.0009 (5)−0.0090 (5)0.0055 (5)
C60.0377 (7)0.0291 (6)0.0135 (5)0.0006 (5)−0.0017 (5)0.0019 (5)
O70.0259 (4)0.0308 (5)0.0188 (4)0.0075 (4)0.0012 (3)−0.0025 (3)
S80.01735 (13)0.02289 (15)0.01281 (13)0.00103 (10)−0.00070 (10)0.00202 (10)
C90.0165 (5)0.0228 (5)0.0121 (5)−0.0006 (4)−0.0004 (4)0.0017 (4)
C100.0159 (5)0.0229 (5)0.0131 (5)−0.0003 (4)−0.0016 (4)0.0021 (4)
C110.0147 (5)0.0205 (5)0.0127 (5)−0.0024 (4)−0.0027 (4)0.0011 (4)
O120.0214 (4)0.0286 (5)0.0168 (4)0.0067 (3)−0.0004 (3)0.0053 (3)
O130.0137 (4)0.0298 (4)0.0129 (4)0.0020 (3)−0.0015 (3)0.0052 (3)
O140.0164 (4)0.0241 (4)0.0169 (4)0.0030 (3)−0.0013 (3)0.0019 (3)
O150.0147 (4)0.0256 (4)0.0139 (4)0.0030 (3)−0.0024 (3)−0.0009 (3)
Ni1—O13i2.0488 (8)C5—H50.9500
Ni1—O132.0488 (8)C6—H60.9500
Ni1—O15i2.0644 (8)S8—C91.8165 (11)
Ni1—O152.0644 (8)C9—C101.5216 (15)
Ni1—O142.0898 (8)C9—H9A0.9900
Ni1—O14i2.0898 (8)C9—H9B0.9900
N1—O71.3154 (13)C10—C111.5195 (15)
N1—C61.3579 (16)C10—H10A0.9900
N1—C21.3687 (14)C10—H10B0.9900
C2—C31.3889 (16)C11—O121.2395 (14)
C2—S81.7405 (11)C11—O131.2818 (13)
C3—C41.3823 (17)O14—H14A0.8142
C3—H30.9500O14—H14B0.8100
C4—C51.3877 (19)O15—H15A0.8216
C4—H40.9500O15—H15B0.8268
C5—C61.3685 (19)
O13i—Ni1—O13180.0C6—C5—H5120.2
O13i—Ni1—O15i88.53 (3)C4—C5—H5120.2
O13—Ni1—O15i91.47 (3)N1—C6—C5120.67 (11)
O13i—Ni1—O1591.47 (3)N1—C6—H6119.7
O13—Ni1—O1588.53 (3)C5—C6—H6119.7
O15i—Ni1—O15180.0C2—S8—C9100.23 (5)
O13i—Ni1—O1488.50 (3)C10—C9—S8108.10 (8)
O13—Ni1—O1491.50 (3)C10—C9—H9A110.1
O15i—Ni1—O1490.66 (3)S8—C9—H9A110.1
O15—Ni1—O1489.34 (3)C10—C9—H9B110.1
O13i—Ni1—O14i91.50 (3)S8—C9—H9B110.1
O13—Ni1—O14i88.50 (3)H9A—C9—H9B108.4
O15i—Ni1—O14i89.34 (3)C11—C10—C9111.71 (9)
O15—Ni1—O14i90.66 (3)C11—C10—H10A109.3
O14—Ni1—O14i180.0C9—C10—H10A109.3
O7—N1—C6121.11 (10)C11—C10—H10B109.3
O7—N1—C2117.75 (10)C9—C10—H10B109.3
C6—N1—C2121.15 (10)H10A—C10—H10B107.9
N1—C2—C3118.82 (10)O12—C11—O13124.27 (10)
N1—C2—S8112.99 (8)O12—C11—C10119.85 (10)
C3—C2—S8128.19 (9)O13—C11—C10115.87 (9)
C4—C3—C2120.43 (11)C11—O13—Ni1126.08 (7)
C4—C3—H3119.8Ni1—O14—H14A98.9
C2—C3—H3119.8Ni1—O14—H14B114.4
C3—C4—C5119.25 (12)H14A—O14—H14B107.5
C3—C4—H4120.4Ni1—O15—H15A111.7
C5—C4—H4120.4Ni1—O15—H15B113.8
C6—C5—C4119.69 (12)H15A—O15—H15B105.3
O7—N1—C2—C3−179.71 (10)N1—C2—S8—C9−171.71 (9)
C6—N1—C2—C30.08 (17)C3—C2—S8—C97.83 (12)
O7—N1—C2—S8−0.12 (14)C2—S8—C9—C10−178.14 (8)
C6—N1—C2—S8179.66 (10)S8—C9—C10—C11−178.64 (8)
N1—C2—C3—C4−0.39 (18)C9—C10—C11—O12−5.56 (15)
S8—C2—C3—C4−179.90 (10)C9—C10—C11—O13175.00 (10)
C2—C3—C4—C50.4 (2)O12—C11—O13—Ni120.56 (17)
C3—C4—C5—C6−0.1 (2)C10—C11—O13—Ni1−160.03 (7)
O7—N1—C6—C5179.99 (12)O15—Ni1—O13—C11−120.55 (9)
C2—N1—C6—C50.2 (2)O14—Ni1—O13—C11−31.25 (10)
C4—C5—C6—N1−0.2 (2)
D—H···AD—HH···AD···AD—H···A
O14—H14A···O120.811.842.6248 (12)162
O14—H14B···O15ii0.812.272.9517 (12)142
O14—H14B···O13ii0.812.643.2316 (12)131
O15—H15A···O7iii0.821.832.6469 (12)172
O15—H15B···O13iv0.831.832.6570 (11)172
C4—H4···O12v0.952.483.2044 (17)133
C6—H6···O14vi0.952.463.2515 (16)140
C10—H10B···O12vii0.992.423.3910 (14)167
Table 1

Selected bond lengths (Å)

Ni1—O132.0488 (8)
Ni1—O152.0644 (8)
Ni1—O142.0898 (8)
N1—O71.3154 (13)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O14—H14A⋯O120.811.842.6248 (12)162
O14—H14B⋯O15i0.812.272.9517 (12)142
O14—H14B⋯O13i0.812.643.2316 (12)131
O15—H15A⋯O7ii0.821.832.6469 (12)172
O15—H15B⋯O13iii0.831.832.6570 (11)172
C4—H4⋯O12iv0.952.483.2044 (17)133
C6—H6⋯O14v0.952.463.2515 (16)140
C10—H10B⋯O12vi0.992.423.3910 (14)167

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

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Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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Authors:  B Ravindran Durai Nayagam; Samuel Robinson Jebas; Selvarathi Grace; Dieter Schollmeyer
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