Literature DB >> 21582393

Di-μ-chlorido-bis-{aqua-chlorido[2,2'-thio-bis(pyridine N-oxide)-κO]copper(II)}.

Rüdiger W Seidel1, Iris M Oppel.   

Abstract

The crystal structure of the title compound, [Cu(2)Cl(4)(C(10)H(8)N(2)O(2)S)(2)(H(2)O)(2)], comprises neutral centrosymmetric μ-chloride-bridged dinuclear units. Each Cu(II) ion is penta-coordinated by three chloride ligands, a pyridine N-oxide O atom and a water mol-ecule. Intra- and inter-molecular O-H⋯O hydrogen bonds occur between the coordinated water mol-ecules and the uncoordinated and coordinated pyridine N-oxide groups of the 2,2'-thio-bis(pyridine N-oxide) ligands, respectively.

Entities:  

Year:  2009        PMID: 21582393      PMCID: PMC2968806          DOI: 10.1107/S1600536809011076

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the potential of pyridine N-oxide-based building blocks in the construction of coordination polymers and crystal engin­eering, see: Sun et al. (2008 ▶) and references cited therein. For details of hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For a copper-catalysed example of in situ S—S and S—Csp 2 bond cleavage and rearrangement of an related disulfide, see: Wang et al. (2007 ▶).

Experimental

Crystal data

[Cu2Cl4(C10H8N2O2S)2(H2O)2] M = 745.40 Monoclinic, a = 6.7552 (18) Å b = 11.430 (3) Å c = 17.375 (3) Å β = 95.516 (17)° V = 1335.4 (6) Å3 Z = 2 Mo Kα radiation μ = 2.19 mm−1 T = 294 K 0.27 × 0.21 × 0.19 mm

Data collection

Siemens P4 four-circle diffractometer Absorption correction: ψ scan (ABSPsiScan in PLATON; Spek, 2009 ▶) T min = 0.529, T max = 0.663 3316 measured reflections 2349 independent reflections 1736 reflections with I > 2(I) R int = 0.058 3 standard reflections every 97 reflections intensity decay: none

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.088 S = 1.02 2349 reflections 178 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.40 e Å−3 Δρmin = −0.53 e Å−3 Data collection: XSCANS (Bruker, 1999 ▶); cell refinement: XSCANS; data reduction: XSCANS; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809011076/dn2439sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809011076/dn2439Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu2Cl4(C10H8N2O2S)2(H2O)2]F(000) = 748
Mr = 745.40Dx = 1.854 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 25 reflections
a = 6.7552 (18) Åθ = 5.1–18.0°
b = 11.430 (3) ŵ = 2.19 mm1
c = 17.375 (3) ÅT = 294 K
β = 95.516 (17)°Prism, dark-yellow
V = 1335.4 (6) Å30.27 × 0.21 × 0.19 mm
Z = 2
Siemens P4 four-circle diffractometer1736 reflections with I > 2(I)
Radiation source: fine-focus sealed tubeRint = 0.058
graphiteθmax = 25.0°, θmin = 2.1°
ω scansh = −8→1
Absorption correction: ψ scan (ABSPsiScan in PLATON; Spek, 2009)k = −1→13
Tmin = 0.529, Tmax = 0.663l = −20→20
3316 measured reflections3 standard reflections every 97 reflections
2349 independent reflections intensity decay: none
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.088H atoms treated by a mixture of independent and constrained refinement
S = 1.01w = 1/[σ2(Fo2) + (0.0347P)2] where P = (Fo2 + 2Fc2)/3
2349 reflections(Δ/σ)max < 0.001
178 parametersΔρmax = 0.40 e Å3
2 restraintsΔρmin = −0.53 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cu10.36057 (7)0.52270 (5)0.07537 (3)0.02340 (16)
Cl10.42569 (17)0.52142 (11)0.20449 (6)0.0365 (3)
Cl20.34708 (15)0.57187 (10)−0.05629 (6)0.0273 (3)
S10.42443 (17)0.79699 (11)0.11518 (7)0.0343 (3)
O10.1176 (4)0.6210 (3)0.07498 (15)0.0272 (7)
O20.1784 (5)0.3623 (3)0.05848 (18)0.0325 (8)
H2A0.086 (5)0.372 (4)0.026 (2)0.039*
H2B0.231 (7)0.305 (3)0.040 (2)0.039*
N10.0804 (5)0.6857 (3)0.13620 (19)0.0250 (8)
C2−0.0843 (6)0.6616 (4)0.1706 (2)0.0290 (11)
H2−0.16830.60130.15210.035*
C3−0.1287 (7)0.7269 (4)0.2335 (3)0.0378 (12)
H3−0.24350.71080.25720.045*
C4−0.0060 (7)0.8142 (4)0.2611 (3)0.0386 (12)
H4−0.03420.85690.30430.046*
C50.1619 (7)0.8391 (4)0.2242 (3)0.0352 (11)
H50.24610.89960.24230.042*
C60.2049 (6)0.7744 (4)0.1606 (2)0.0250 (10)
O110.6518 (4)0.8360 (3)0.00176 (19)0.0412 (9)
N110.4647 (5)0.8581 (3)−0.0254 (2)0.0315 (9)
C120.3202 (7)0.8442 (4)0.0239 (2)0.0276 (11)
C130.1254 (6)0.8656 (4)−0.0018 (2)0.0292 (11)
H130.02670.85660.03150.035*
C140.0761 (7)0.9005 (4)−0.0771 (3)0.0378 (12)
H14−0.05600.9141−0.09510.045*
C150.2246 (8)0.9151 (4)−0.1254 (3)0.0425 (13)
H150.19300.9400−0.17610.051*
C160.4167 (8)0.8932 (4)−0.0992 (3)0.0395 (13)
H160.51610.9024−0.13220.047*
U11U22U33U12U13U23
Cu10.0210 (3)0.0273 (3)0.0224 (3)0.0022 (3)0.0041 (2)−0.0021 (2)
Cl10.0376 (7)0.0499 (7)0.0224 (6)0.0122 (6)0.0045 (5)0.0007 (5)
Cl20.0246 (6)0.0331 (6)0.0249 (6)0.0063 (5)0.0050 (4)−0.0017 (5)
S10.0216 (6)0.0443 (7)0.0370 (7)−0.0053 (6)0.0028 (5)0.0023 (6)
O10.0223 (16)0.0342 (17)0.0250 (16)0.0056 (14)0.0018 (13)−0.0109 (14)
O20.0259 (19)0.0323 (19)0.038 (2)−0.0022 (16)−0.0030 (15)−0.0023 (16)
N10.0210 (19)0.029 (2)0.0253 (19)0.0026 (17)0.0042 (16)−0.0004 (17)
C20.021 (2)0.031 (3)0.036 (3)−0.001 (2)0.006 (2)0.000 (2)
C30.029 (3)0.053 (3)0.033 (3)0.006 (3)0.008 (2)−0.001 (2)
C40.046 (3)0.042 (3)0.030 (3)0.008 (3)0.011 (2)−0.006 (2)
C50.041 (3)0.028 (3)0.037 (3)−0.005 (2)−0.001 (2)−0.005 (2)
C60.019 (2)0.030 (2)0.027 (2)0.001 (2)0.0029 (19)0.0001 (19)
O110.0196 (17)0.047 (2)0.059 (2)−0.0015 (16)0.0111 (16)−0.0083 (17)
N110.023 (2)0.026 (2)0.047 (2)−0.0057 (17)0.0112 (18)−0.0080 (19)
C120.028 (3)0.022 (2)0.035 (3)−0.008 (2)0.011 (2)−0.007 (2)
C130.020 (2)0.032 (3)0.037 (3)−0.002 (2)0.012 (2)−0.002 (2)
C140.037 (3)0.037 (3)0.040 (3)−0.002 (2)0.002 (2)0.007 (2)
C150.048 (3)0.049 (3)0.030 (3)−0.006 (3)0.007 (2)0.002 (2)
C160.049 (3)0.045 (3)0.028 (3)−0.010 (3)0.020 (2)−0.004 (2)
Cu1—O11.988 (3)C3—H30.9300
Cu1—O22.212 (3)C4—C51.386 (6)
Cu1—Cl12.2443 (12)C4—H40.9300
Cu1—Cl2i2.3031 (12)C5—C61.384 (6)
Cu1—Cl22.3489 (12)C5—H50.9300
Cl2—Cu1i2.3031 (12)O11—N111.331 (5)
S1—C121.758 (5)N11—C161.353 (6)
S1—C61.764 (4)N11—C121.369 (5)
O1—N11.339 (4)C12—C131.370 (6)
O2—H2A0.81 (2)C13—C141.378 (6)
O2—H2B0.82 (2)C13—H130.9300
N1—C21.341 (5)C14—C151.379 (6)
N1—C61.359 (5)C14—H140.9300
C2—C31.381 (6)C15—C161.357 (7)
C2—H20.9300C15—H150.9300
C3—C41.355 (7)C16—H160.9300
O1—Cu1—O291.10 (12)C3—C4—H4120.4
O1—Cu1—Cl195.13 (8)C5—C4—H4120.4
O2—Cu1—Cl1100.39 (9)C6—C5—C4120.3 (4)
O1—Cu1—Cl2i169.61 (9)C6—C5—H5119.9
O2—Cu1—Cl2i93.77 (9)C4—C5—H5119.9
Cl1—Cu1—Cl2i93.00 (4)N1—C6—C5118.5 (4)
O1—Cu1—Cl284.65 (8)N1—C6—S1119.4 (3)
O2—Cu1—Cl295.75 (9)C5—C6—S1121.9 (3)
Cl1—Cu1—Cl2163.86 (5)O11—N11—C16121.7 (4)
Cl2i—Cu1—Cl285.74 (4)O11—N11—C12117.8 (4)
Cu1i—Cl2—Cu194.26 (4)C16—N11—C12120.5 (4)
C12—S1—C699.6 (2)N11—C12—C13119.7 (4)
N1—O1—Cu1121.8 (2)N11—C12—S1110.7 (3)
Cu1—O2—H2A111 (4)C13—C12—S1129.6 (3)
Cu1—O2—H2B117 (3)C12—C13—C14119.9 (4)
H2A—O2—H2B100 (5)C12—C13—H13120.1
O1—N1—C2117.9 (4)C14—C13—H13120.1
O1—N1—C6120.1 (3)C13—C14—C15119.3 (5)
C2—N1—C6122.0 (4)C13—C14—H14120.3
N1—C2—C3119.6 (4)C15—C14—H14120.3
N1—C2—H2120.2C16—C15—C14120.1 (5)
C3—C2—H2120.2C16—C15—H15120.0
C4—C3—C2120.4 (4)C14—C15—H15120.0
C4—C3—H3119.8N11—C16—C15120.5 (4)
C2—C3—H3119.8N11—C16—H16119.7
C3—C4—C5119.2 (4)C15—C16—H16119.7
D—H···AD—HH···AD···AD—H···A
O2—H2A···O1ii0.81 (2)2.13 (2)2.919 (4)167 (5)
O2—H2B···O11i0.82 (2)1.97 (2)2.789 (5)177 (5)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2A⋯O1i0.81 (2)2.13 (2)2.919 (4)167 (5)
O2—H2B⋯O11ii0.82 (2)1.97 (2)2.789 (5)177 (5)

Symmetry codes: (i) ; (ii) .

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