Literature DB >> 21582392

Tetra-aqua-bis[(1-ammonio-1-phosphono-ethyl)phospho-nato]zinc(II) tetra-hydrate.

A Dudko1, V Bon, A Kozachkova, V Pekhnyo.   

Abstract

The title compound, [Zn(C(2)H(8)NO(6)P(2))(2)(H(2)O)(4)]·4H(2)O, was synthesized by the reaction of ZnCl(2) with 1-amino-ethane-1,1-diyldiphospho-nic acid in aqueous solution. The asymmetric unit contains one-half of the complex and two water mol-ecules of solvation. The Zn atom occupies a special position on an inversion centre. This results in a slightly distorted octa-hedral coordination environment, which consists of the O atoms from two phospho-nic acids and four water mol-ecules. The crystal structure displays N-H⋯O and O-H⋯O hydrogen bonding, which creates a three-dimensional network.

Entities:  

Year:  2009        PMID: 21582392      PMCID: PMC2969005          DOI: 10.1107/S1600536809010599

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

Diphospho­nic acids are efficient drugs for the prevention of calcification and the inhibition of bone resorption, see: Matczak-Jon & Videnova-Adrabinska (2005 ▶). Diphospho­nic acids and their metal complexes are used in the treatment of Pagets disease, osteoporosis and tumoral osteolysis, see: Szabo et al. (2002 ▶). For related structures, see: Li et al. (2006 ▶, 2007 ▶); Lin et al. (2007 ▶).

Experimental

Crystal data

[Zn(C2H8NO6P2)2(H2O)4]·4H2O M = 617.57 Triclinic, a = 5.6712 (4) Å b = 9.3279 (6) Å c = 10.7009 (7) Å α = 96.440 (3)° β = 90.788 (3)° γ = 102.080 (3)° V = 549.65 (6) Å3 Z = 1 Mo Kα radiation μ = 1.50 mm−1 T = 173 K 0.36 × 0.10 × 0.04 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: numerical (SADABS; Bruker, 2005 ▶) T min = 0.612, T max = 0.945 8897 measured reflections 2244 independent reflections 1747 reflections with I > 2σ(I) R int = 0.058

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.081 S = 1.00 2244 reflections 182 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.39 e Å−3 Δρmin = −0.48 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: publCIF (Westrip, 2009 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809010599/fj2201sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809010599/fj2201Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Zn(C2H8NO6P2)2(H2O)4]·4H2OZ = 1
Mr = 617.57F(000) = 320
Triclinic, P1Dx = 1.866 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 5.6712 (4) ÅCell parameters from 2105 reflections
b = 9.3279 (6) Åθ = 2.3–25.9°
c = 10.7009 (7) ŵ = 1.50 mm1
α = 96.440 (3)°T = 173 K
β = 90.788 (3)°Block, colourless
γ = 102.080 (3)°0.36 × 0.10 × 0.04 mm
V = 549.65 (6) Å3
Bruker APEXII CCD diffractometer2244 independent reflections
Radiation source: fine-focus sealed tube1747 reflections with I > 2σ(I)
graphiteRint = 0.058
Detector resolution: 8.26 pixels mm-1θmax = 26.4°, θmin = 2.3°
φ and ω scansh = −7→7
Absorption correction: numerical (SADABS; Bruker, 2005)k = −11→10
Tmin = 0.612, Tmax = 0.945l = −13→13
8897 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.037Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.081H atoms treated by a mixture of independent and constrained refinement
S = 1.00w = 1/[σ2(Fo2) + (0.0395P)2] where P = (Fo2 + 2Fc2)/3
2244 reflections(Δ/σ)max < 0.001
182 parametersΔρmax = 0.39 e Å3
1 restraintΔρmin = −0.47 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Zn10.00000.50000.50000.01171 (16)
P10.02405 (14)0.80873 (8)0.37915 (7)0.01033 (19)
P2−0.00669 (14)0.81048 (9)0.09143 (7)0.0116 (2)
C10.1808 (5)0.8672 (3)0.2381 (3)0.0109 (6)
C20.2791 (6)1.0348 (3)0.2544 (3)0.0176 (7)
H2A0.39831.06140.32480.026*
H2B0.14611.08550.27160.026*
H2C0.35571.06440.17700.026*
N10.3905 (5)0.7921 (3)0.2240 (3)0.0133 (6)
H1A0.483 (6)0.830 (4)0.160 (3)0.020*
H1B0.349 (6)0.699 (4)0.208 (3)0.020*
H1C0.485 (6)0.807 (4)0.295 (3)0.020*
O1−0.0090 (4)0.6449 (2)0.37040 (19)0.0135 (5)
O20.2165 (4)0.8783 (2)0.4886 (2)0.0143 (5)
H2O0.206 (6)0.956 (4)0.519 (3)0.017*
O3−0.1966 (4)0.8741 (2)0.39210 (19)0.0139 (5)
O4−0.0857 (4)0.6470 (2)0.0759 (2)0.0181 (5)
O50.1793 (4)0.8548 (2)−0.0123 (2)0.0148 (5)
H5O0.182 (6)0.931 (3)−0.039 (3)0.018*
O6−0.1990 (4)0.8997 (2)0.0930 (2)0.0156 (5)
O70.1908 (4)0.3844 (3)0.3764 (2)0.0183 (5)
H710.319 (7)0.371 (4)0.408 (3)0.022*
H720.204 (7)0.413 (4)0.312 (4)0.022*
O80.3234 (4)0.6366 (3)0.5883 (2)0.0152 (5)
H810.311 (6)0.719 (4)0.571 (3)0.018*
H820.300 (6)0.633 (4)0.667 (4)0.018*
O90.2666 (4)0.6106 (3)0.8304 (2)0.0181 (5)
H910.228 (6)0.681 (4)0.882 (3)0.022*
H920.189 (6)0.532 (4)0.852 (3)0.022*
O100.3107 (4)0.4849 (3)0.1490 (2)0.0187 (5)
H1010.236 (6)0.448 (4)0.079 (4)0.022*
H1020.437 (7)0.460 (4)0.143 (3)0.022*
U11U22U33U12U13U23
Zn10.0117 (3)0.0109 (3)0.0129 (3)0.0029 (2)0.0003 (2)0.0021 (2)
P10.0105 (4)0.0103 (4)0.0105 (4)0.0031 (3)0.0003 (3)0.0009 (3)
P20.0115 (4)0.0125 (4)0.0116 (4)0.0031 (3)−0.0009 (3)0.0035 (3)
C10.0096 (15)0.0088 (15)0.0146 (16)0.0030 (12)0.0003 (12)0.0007 (12)
C20.0208 (18)0.0114 (16)0.0183 (18)−0.0021 (13)0.0001 (14)0.0017 (13)
N10.0105 (14)0.0155 (15)0.0134 (15)0.0010 (12)−0.0017 (11)0.0032 (12)
O10.0179 (12)0.0093 (11)0.0133 (12)0.0028 (9)0.0007 (9)0.0011 (8)
O20.0164 (12)0.0141 (12)0.0129 (12)0.0067 (10)−0.0032 (9)−0.0032 (9)
O30.0118 (11)0.0150 (12)0.0154 (12)0.0049 (9)−0.0013 (9)−0.0004 (9)
O40.0224 (13)0.0143 (12)0.0158 (12)0.0001 (9)−0.0047 (10)0.0013 (9)
O50.0187 (12)0.0118 (12)0.0167 (12)0.0061 (10)0.0061 (9)0.0080 (9)
O60.0113 (11)0.0206 (12)0.0178 (12)0.0060 (9)0.0024 (9)0.0092 (9)
O70.0186 (13)0.0225 (13)0.0162 (13)0.0090 (10)−0.0004 (11)0.0043 (10)
O80.0146 (12)0.0139 (12)0.0181 (13)0.0034 (10)−0.0017 (10)0.0054 (10)
O90.0201 (13)0.0148 (12)0.0199 (13)0.0042 (10)0.0041 (10)0.0025 (10)
O100.0152 (13)0.0239 (13)0.0176 (13)0.0072 (11)−0.0022 (10)−0.0004 (10)
Zn1—O12.050 (2)C2—H2A0.9800
Zn1—O1i2.050 (2)C2—H2B0.9800
Zn1—O7i2.071 (2)C2—H2C0.9800
Zn1—O72.071 (2)N1—H1A0.93 (4)
Zn1—O8i2.141 (2)N1—H1B0.85 (4)
Zn1—O82.141 (2)N1—H1C0.90 (4)
P1—O11.492 (2)O2—H2O0.78 (3)
P1—O31.504 (2)O5—H5O0.793 (18)
P1—O21.575 (2)O7—H710.84 (4)
P1—C11.839 (3)O7—H720.76 (4)
P2—O41.486 (2)O8—H810.82 (4)
P2—O61.503 (2)O8—H820.86 (4)
P2—O51.571 (2)O9—H910.87 (4)
P2—C11.846 (3)O9—H920.83 (4)
C1—N11.502 (4)O10—H1010.85 (4)
C1—C21.535 (4)O10—H1020.80 (4)
O1—Zn1—O1i179.999 (1)N1—C1—P1107.2 (2)
O1—Zn1—O7i90.77 (9)C2—C1—P1110.6 (2)
O1i—Zn1—O7i89.23 (9)N1—C1—P2106.55 (19)
O1—Zn1—O789.23 (9)C2—C1—P2110.3 (2)
O1i—Zn1—O790.77 (9)P1—C1—P2113.58 (16)
O7i—Zn1—O7180.00 (11)C1—C2—H2A109.5
O1—Zn1—O8i88.74 (9)C1—C2—H2B109.5
O1i—Zn1—O8i91.26 (9)H2A—C2—H2B109.5
O7i—Zn1—O8i92.46 (9)C1—C2—H2C109.5
O7—Zn1—O8i87.54 (9)H2A—C2—H2C109.5
O1—Zn1—O891.27 (9)H2B—C2—H2C109.5
O1i—Zn1—O888.73 (9)C1—N1—H1A108 (2)
O7i—Zn1—O887.54 (9)C1—N1—H1B114 (2)
O7—Zn1—O892.46 (9)H1A—N1—H1B110 (3)
O8i—Zn1—O8180.0C1—N1—H1C113 (2)
O1—P1—O3118.11 (12)H1A—N1—H1C108 (3)
O1—P1—O2107.82 (12)H1B—N1—H1C104 (3)
O3—P1—O2111.01 (12)P1—O1—Zn1133.80 (13)
O1—P1—C1107.13 (13)P1—O2—H2O115 (3)
O3—P1—C1108.84 (13)P2—O5—H5O118 (3)
O2—P1—C1102.79 (13)Zn1—O7—H71113 (2)
O4—P2—O6117.67 (13)Zn1—O7—H72114 (3)
O4—P2—O5108.21 (12)H71—O7—H72114 (4)
O6—P2—O5110.56 (12)Zn1—O8—H81101 (2)
O4—P2—C1108.34 (13)Zn1—O8—H82103 (2)
O6—P2—C1108.52 (13)H81—O8—H82108 (3)
O5—P2—C1102.44 (13)H91—O9—H92106 (3)
N1—C1—C2108.4 (3)H101—O10—H102103 (3)
O1—P1—C1—N1−47.7 (2)O6—P2—C1—C2−54.5 (2)
O3—P1—C1—N1−176.47 (18)O5—P2—C1—C262.5 (2)
O2—P1—C1—N165.8 (2)O4—P2—C1—P1−58.45 (19)
O1—P1—C1—C2−165.7 (2)O6—P2—C1—P170.38 (18)
O3—P1—C1—C265.6 (2)O5—P2—C1—P1−172.68 (15)
O2—P1—C1—C2−52.2 (2)O3—P1—O1—Zn1−92.94 (19)
O1—P1—C1—P269.67 (18)O2—P1—O1—Zn133.8 (2)
O3—P1—C1—P2−59.08 (18)C1—P1—O1—Zn1143.85 (17)
O2—P1—C1—P2−176.85 (15)O7i—Zn1—O1—P141.88 (18)
O4—P2—C1—N159.3 (2)O7—Zn1—O1—P1−138.12 (18)
O6—P2—C1—N1−171.88 (19)O8i—Zn1—O1—P1134.32 (18)
O5—P2—C1—N1−54.9 (2)O8—Zn1—O1—P1−45.68 (18)
O4—P2—C1—C2176.7 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O6ii0.93 (4)1.96 (4)2.796 (4)150 (3)
N1—H1B···O100.85 (4)1.99 (4)2.827 (4)168 (3)
N1—H1C···O3ii0.90 (4)2.01 (4)2.851 (3)153 (3)
O2—H2O···O3iii0.78 (3)1.76 (3)2.536 (3)172 (4)
O5—H5O···O6iv0.79 (2)1.73 (2)2.519 (3)177 (4)
O7—H71···O8v0.84 (4)2.05 (4)2.826 (3)155 (3)
O7—H72···O100.76 (4)2.00 (4)2.748 (3)168 (4)
O8—H81···O20.82 (4)1.97 (4)2.772 (3)163 (3)
O8—H82···O90.86 (4)1.79 (4)2.646 (3)174 (3)
O9—H91···O5vi0.87 (4)1.94 (4)2.810 (3)172 (3)
O9—H92···O4i0.83 (4)1.91 (4)2.715 (3)165 (4)
O10—H101···O4vii0.85 (4)1.90 (4)2.744 (3)175 (3)
O10—H102···O9v0.80 (4)1.96 (4)2.741 (3)167 (4)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯O6i0.93 (4)1.96 (4)2.796 (4)150 (3)
N1—H1B⋯O100.85 (4)1.99 (4)2.827 (4)168 (3)
N1—H1C⋯O3i0.90 (4)2.01 (4)2.851 (3)153 (3)
O2—H2O⋯O3ii0.78 (3)1.76 (3)2.536 (3)172 (4)
O5—H5O⋯O6iii0.793 (18)1.726 (19)2.519 (3)177 (4)
O7—H71⋯O8iv0.84 (4)2.05 (4)2.826 (3)155 (3)
O7—H72⋯O100.76 (4)2.00 (4)2.748 (3)168 (4)
O8—H81⋯O20.82 (4)1.97 (4)2.772 (3)163 (3)
O8—H82⋯O90.86 (4)1.79 (4)2.646 (3)174 (3)
O9—H91⋯O5v0.87 (4)1.94 (4)2.810 (3)172 (3)
O9—H92⋯O4vi0.83 (4)1.91 (4)2.715 (3)165 (4)
O10—H101⋯O4vii0.85 (4)1.90 (4)2.744 (3)175 (3)
O10—H102⋯O9iv0.80 (4)1.96 (4)2.741 (3)167 (4)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) ; (vii) .

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