Literature DB >> 21582303

5-(2,6-Dimethoxy-phen-oxy)-2-methyl-sulfanylmethyl-2H-tetra-zole.

Nader Noroozi Pesyan, Negar Omidkhah, Mina Maghsoodi, Brian O Patrick.   

Abstract

In the title mol-ecule, C(11)H(14)N(4)O(3)S, the tetra-zole and benzene rings are nearly perpendicular to each other, forming a dihedral angle of 104.93 (14)°. The crystal packing exhibits weak inter-molecular C-H⋯O hydrogen bonds.

Entities:  

Year:  2009        PMID: 21582303      PMCID: PMC2968452          DOI: 10.1107/S1600536809006138

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a related crystal structure, see: Dabbagh et al. (2005 ▶).

Experimental

Crystal data

C11H14N4O3S M = 282.32 Orthorhombic, a = 12.1795 (5) Å b = 11.0809 (4) Å c = 9.9026 (4) Å V = 1336.45 (9) Å3 Z = 4 Mo Kα radiation μ = 0.25 mm−1 T = 173 K 0.50 × 0.25 × 0.10 mm

Data collection

Bruker X8 APEXII diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.871, T max = 0.975 7950 measured reflections 2873 independent reflections 2670 reflections with I > 2σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.026 wR(F 2) = 0.067 S = 1.08 2873 reflections 175 parameters 1 restraint H-atom parameters constrained Δρmax = 0.18 e Å−3 Δρmin = −0.15 e Å−3 Absolute structure: Flack (1983 ▶), 1220 Friedel pairs Flack parameter: 0.06 (6) Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: APEX2; data reduction: SAINT (Bruker, 2008 ▶); program(s) used to solve structure: SIR (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXTL (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809006138/cv2515sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809006138/cv2515Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H14N4O3SF(000) = 592
Mr = 282.32Dx = 1.403 Mg m3
Orthorhombic, Pca21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2c -2acCell parameters from 4562 reflections
a = 12.1795 (5) Åθ = 2.8–27.8°
b = 11.0809 (4) ŵ = 0.25 mm1
c = 9.9026 (4) ÅT = 173 K
V = 1336.45 (9) Å3Irregular, colourless
Z = 40.50 × 0.25 × 0.10 mm
Bruker X8 APEXII diffractometer2873 independent reflections
Radiation source: fine-focus sealed tube2670 reflections with I > 2σ(I)
graphiteRint = 0.020
Area–detector scansθmax = 28.0°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −16→15
Tmin = 0.871, Tmax = 0.975k = −14→14
7950 measured reflectionsl = −12→12
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.026H-atom parameters constrained
wR(F2) = 0.067w = 1/[σ2(Fo2) + (0.0323P)2 + 0.1529P] where P = (Fo2 + 2Fc2)/3
S = 1.08(Δ/σ)max = 0.002
2873 reflectionsΔρmax = 0.18 e Å3
175 parametersΔρmin = −0.15 e Å3
1 restraintAbsolute structure: Flack (1983), 1220 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.06 (6)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.56871 (11)0.77249 (11)0.88143 (15)0.0219 (3)
C20.65815 (12)0.75439 (12)0.96546 (15)0.0236 (3)
C30.74485 (12)0.83700 (14)0.96021 (18)0.0282 (3)
H30.80750.82641.01610.034*
C40.73884 (12)0.93401 (13)0.87333 (17)0.0296 (3)
H40.79840.98930.87000.035*
C50.64873 (13)0.95357 (13)0.79062 (17)0.0279 (3)
H50.64601.02150.73220.033*
C60.56210 (12)0.87112 (12)0.79505 (15)0.0244 (3)
C70.74036 (16)0.64203 (15)1.1436 (2)0.0417 (4)
H7A0.80860.62131.09660.063*
H7B0.72160.57761.20730.063*
H7C0.75030.71791.19300.063*
C80.45668 (14)0.97946 (14)0.6331 (2)0.0388 (4)
H8A0.46211.05390.68610.058*
H8B0.38480.97610.58870.058*
H8C0.51480.97820.56460.058*
C90.39202 (11)0.70979 (11)0.94053 (14)0.0213 (3)
C100.12256 (13)0.65157 (14)1.0324 (2)0.0334 (3)
H10A0.09720.68041.12170.040*
H10B0.12160.56221.03410.040*
C110.05905 (16)0.59888 (17)0.77160 (19)0.0451 (4)
H11A0.13600.60800.74450.068*
H11B0.01130.61570.69410.068*
H11C0.04640.51620.80310.068*
N10.30621 (9)0.63680 (9)0.92891 (14)0.0250 (3)
N20.23531 (10)0.69247 (10)1.01082 (14)0.0266 (3)
N30.27358 (11)0.79161 (11)1.06706 (16)0.0328 (3)
N40.37580 (11)0.80385 (11)1.02308 (15)0.0298 (3)
O10.65369 (8)0.65558 (9)1.04724 (12)0.0297 (2)
O20.46880 (9)0.87735 (9)0.72061 (12)0.0316 (3)
O30.48597 (8)0.68410 (8)0.87649 (10)0.0231 (2)
S10.02856 (3)0.70315 (4)0.90562 (6)0.04717 (14)
U11U22U33U12U13U23
C10.0180 (6)0.0215 (6)0.0261 (8)−0.0025 (5)0.0015 (6)−0.0033 (5)
C20.0226 (7)0.0245 (6)0.0237 (8)0.0029 (5)0.0009 (6)−0.0048 (5)
C30.0182 (7)0.0354 (7)0.0310 (9)−0.0003 (5)−0.0019 (6)−0.0091 (6)
C40.0239 (7)0.0294 (7)0.0354 (9)−0.0069 (5)0.0059 (6)−0.0086 (6)
C50.0292 (7)0.0237 (6)0.0308 (8)−0.0041 (5)0.0051 (6)−0.0009 (6)
C60.0239 (7)0.0249 (6)0.0243 (8)0.0007 (5)0.0008 (6)−0.0018 (5)
C70.0426 (10)0.0425 (8)0.0400 (10)0.0014 (8)−0.0177 (9)0.0046 (8)
C80.0417 (9)0.0323 (8)0.0425 (10)−0.0001 (7)−0.0069 (9)0.0140 (7)
C90.0203 (6)0.0197 (5)0.0238 (8)0.0018 (5)−0.0028 (6)0.0026 (5)
C100.0221 (7)0.0346 (7)0.0436 (9)−0.0046 (6)0.0078 (7)−0.0024 (7)
C110.0453 (11)0.0475 (10)0.0423 (11)−0.0133 (8)−0.0079 (9)0.0117 (8)
N10.0201 (5)0.0251 (5)0.0298 (7)−0.0018 (4)0.0008 (5)−0.0012 (5)
N20.0209 (6)0.0257 (6)0.0332 (8)−0.0011 (5)0.0028 (5)−0.0010 (5)
N30.0267 (6)0.0288 (6)0.0430 (9)−0.0028 (5)0.0053 (6)−0.0072 (5)
N40.0244 (6)0.0267 (6)0.0382 (8)−0.0030 (5)0.0022 (6)−0.0059 (5)
O10.0279 (6)0.0299 (5)0.0312 (6)0.0007 (4)−0.0075 (5)0.0025 (4)
O20.0296 (6)0.0292 (5)0.0361 (7)−0.0045 (4)−0.0102 (5)0.0098 (4)
O30.0187 (5)0.0204 (4)0.0302 (6)−0.0028 (3)−0.0003 (4)−0.0023 (4)
S10.02395 (18)0.0424 (2)0.0752 (4)0.00636 (16)−0.0048 (2)0.0022 (2)
C1—O31.4062 (15)C7—H7B0.9800
C9—O31.3388 (17)C7—H7C0.9800
N2—C101.4618 (19)C8—O21.4330 (18)
S1—C101.792 (2)C8—H8A0.9800
C6—O21.3562 (18)C8—H8B0.9800
C2—O11.3630 (17)C8—H8C0.9800
C1—C21.385 (2)C9—N11.3265 (17)
C1—C61.390 (2)C9—N41.3393 (18)
C2—C31.399 (2)C10—H10A0.9900
C3—C41.379 (2)C10—H10B0.9900
C3—H30.9500C11—S11.798 (2)
C4—C51.386 (2)C11—H11A0.9800
C4—H40.9500C11—H11B0.9800
C5—C61.3964 (19)C11—H11C0.9800
C5—H50.9500N1—N21.3357 (17)
C7—O11.431 (2)N2—N31.3169 (17)
C7—H7A0.9800N3—N41.3260 (18)
C9—O3—C1116.61 (10)O2—C8—H8B109.5
N2—C10—S1113.52 (12)H8A—C8—H8B109.5
C10—S1—C11100.37 (9)O2—C8—H8C109.5
C2—C1—C6121.93 (12)H8A—C8—H8C109.5
C2—C1—O3118.92 (12)H8B—C8—H8C109.5
C6—C1—O3118.99 (12)N1—C9—O3120.17 (11)
O1—C2—C1116.22 (12)N1—C9—N4114.28 (12)
O1—C2—C3125.32 (13)O3—C9—N4125.50 (12)
C1—C2—C3118.47 (13)N2—C10—H10A108.9
C4—C3—C2119.57 (14)S1—C10—H10A108.9
C4—C3—H3120.2N2—C10—H10B108.9
C2—C3—H3120.2S1—C10—H10B108.9
C3—C4—C5122.18 (13)H10A—C10—H10B107.7
C3—C4—H4118.9S1—C11—H11A109.5
C5—C4—H4118.9S1—C11—H11B109.5
C4—C5—C6118.51 (14)H11A—C11—H11B109.5
C4—C5—H5120.7S1—C11—H11C109.5
C6—C5—H5120.7H11A—C11—H11C109.5
O2—C6—C1115.02 (12)H11B—C11—H11C109.5
O2—C6—C5125.64 (13)C9—N1—N2100.09 (11)
C1—C6—C5119.33 (14)N3—N2—N1114.41 (12)
O1—C7—H7A109.5N3—N2—C10121.96 (13)
O1—C7—H7B109.5N1—N2—C10123.56 (12)
H7A—C7—H7B109.5N2—N3—N4106.18 (12)
O1—C7—H7C109.5N3—N4—C9105.04 (12)
H7A—C7—H7C109.5C2—O1—C7116.81 (12)
H7B—C7—H7C109.5C6—O2—C8117.09 (12)
O2—C8—H8A109.5
C6—C1—O3—C9−79.52 (17)N4—C9—N1—N2−0.13 (16)
N4—C9—O3—C1−9.6 (2)C9—N1—N2—N30.54 (16)
C6—C1—C2—O1178.73 (13)C9—N1—N2—C10177.63 (14)
O3—C1—C2—O1−5.86 (18)S1—C10—N2—N393.31 (17)
C6—C1—C2—C3−1.4 (2)S1—C10—N2—N1−83.56 (15)
O3—C1—C2—C3174.02 (13)N1—N2—N3—N4−0.76 (18)
O1—C2—C3—C4−179.56 (14)C10—N2—N3—N4−177.90 (15)
C1—C2—C3—C40.6 (2)N2—N3—N4—C90.60 (17)
C2—C3—C4—C50.5 (2)N1—C9—N4—N3−0.31 (17)
C3—C4—C5—C6−0.7 (2)O3—C9—N4—N3−177.81 (14)
C2—C1—C6—O2−179.07 (13)C1—C2—O1—C7−174.19 (14)
O3—C1—C6—O25.51 (18)C3—C2—O1—C75.9 (2)
C2—C1—C6—C51.2 (2)C1—C6—O2—C8178.13 (14)
O3—C1—C6—C5−174.26 (13)C5—C6—O2—C8−2.1 (2)
C4—C5—C6—O2−179.84 (14)N1—C9—O3—C1173.03 (12)
C4—C5—C6—C1−0.1 (2)C2—C1—O3—C9104.93 (14)
O3—C9—N1—N2177.52 (12)N2—C10—S1—C1178.85 (13)
D—H···AD—HH···AD···AD—H···A
C10—H10B···O1i0.992.453.4277 (19)170
C11—H11C···O3i0.982.453.421 (2)172
C11—H11B···O1ii0.982.523.471 (2)163
C10—H10A···O2iii0.992.523.312 (2)137
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C10—H10B⋯O1i0.992.453.4277 (19)170
C11—H11C⋯O3i0.982.453.421 (2)172
C11—H11B⋯O1ii0.982.523.471 (2)163
C10—H10A⋯O2iii0.992.523.312 (2)137

Symmetry codes: (i) ; (ii) ; (iii) .

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1.  N-[(Methyl-sulfan-yl)meth-yl]benzamide.

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