Literature DB >> 21582274

2-{3,4-Dibut-oxy-5-[5-(3-methyl-phen-yl)-1,3,4-oxadiazol-2-yl]thio-phen-2-yl}-5-(3-methyl-phen-yl)-1,3,4-oxadiazole.

Lu-Na Han, Ran-Zhe Lu, Min Zhang, Hai-Bo Wang.   

Abstract

In the title compound, C(30)H(32)N(4)O(4)S, the dihedral angles between the central thio-phene ring and the pendant oxadiazole rings are 10.1 (2) and 6.8 (3)°. The dihedral angles between each oxadiazole ring and its adjacent benzene ring are 6.8 (2) and 5.3 (3)°.

Entities:  

Year:  2009        PMID: 21582274      PMCID: PMC2968503          DOI: 10.1107/S1600536809006539

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background on the applications of thio­phenes, see: Laurent et al. (2005 ▶).

Experimental

Crystal data

C30H32N4O4S M = 544.67 Monoclinic, a = 16.421 (3) Å b = 14.432 (3) Å c = 12.338 (3) Å β = 98.36 (3)° V = 2892.9 (11) Å3 Z = 4 Mo Kα radiation μ = 0.15 mm−1 T = 293 K 0.30 × 0.20 × 0.10 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.956, T max = 0.985 5526 measured reflections 5260 independent reflections 2161 reflections with I > 2σ(I) R int = 0.048 3 standard reflections every 200 reflections intensity decay: 1%

Refinement

R[F 2 > 2σ(F 2)] = 0.071 wR(F 2) = 0.167 S = 1.00 5260 reflections 352 parameters 52 restraints H-atom parameters constrained Δρmax = 0.15 e Å−3 Δρmin = −0.13 e Å−3 Data collection: CAD-4 Software (Enraf–Nonius, 1989 ▶); cell refinement: CAD-4 Software; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809006539/hb2914sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809006539/hb2914Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C30H32N4O4SF(000) = 1152
Mr = 544.67Dx = 1.251 Mg m3
Monoclinic, P21/cMelting point: 440 K
Hall symbol: -P 2ybcMo Kα radiation, λ = 0.71073 Å
a = 16.421 (3) ÅCell parameters from 25 reflections
b = 14.432 (3) Åθ = 8–12°
c = 12.338 (3) ŵ = 0.15 mm1
β = 98.36 (3)°T = 293 K
V = 2892.9 (11) Å3Block, light yellow
Z = 40.30 × 0.20 × 0.10 mm
Enraf–Nonius CAD-4 diffractometer2161 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.048
graphiteθmax = 25.3°, θmin = 1.3°
ω/2θ scansh = 0→19
Absorption correction: ψ scan (North et al., 1968)k = 0→17
Tmin = 0.956, Tmax = 0.985l = −14→14
5526 measured reflections3 standard reflections every 200 reflections
5260 independent reflections intensity decay: 1%
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.071Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.167H-atom parameters constrained
S = 1.00w = 1/[σ2(Fo2) + (0.04P)2 + 1.2P] where P = (Fo2 + 2Fc2)/3
5260 reflections(Δ/σ)max < 0.001
352 parametersΔρmax = 0.14 e Å3
52 restraintsΔρmin = −0.13 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S0.26175 (7)0.22411 (9)0.70173 (9)0.0957 (4)
N10.4127 (2)0.2826 (3)1.0254 (3)0.1009 (12)
O10.36204 (17)0.4067 (2)0.9317 (3)0.1033 (10)
C10.5391 (3)0.4136 (3)1.4095 (3)0.1134 (16)
H1B0.55660.46221.46070.170*
H1C0.58540.37511.40040.170*
H1D0.49770.37681.43660.170*
O20.28937 (19)0.4885 (3)0.7289 (2)0.1031 (10)
N20.3700 (2)0.2498 (3)0.9236 (3)0.1017 (12)
C20.5029 (3)0.4566 (4)1.2971 (4)0.0997 (15)
O30.1942 (2)0.4382 (2)0.5174 (2)0.1087 (10)
N30.1668 (3)0.1439 (4)0.4892 (3)0.1150 (14)
C30.5001 (3)0.5472 (5)1.2837 (4)0.1192 (18)
H3B0.52190.58451.34230.143*
O40.12985 (18)0.2718 (2)0.4131 (3)0.1015 (9)
C40.4659 (3)0.5907 (4)1.1849 (4)0.1109 (16)
H4A0.46440.65431.17220.133*
N40.1195 (3)0.1222 (3)0.3878 (4)0.1079 (13)
C50.4329 (3)0.5193 (5)1.1053 (5)0.122 (2)
H5A0.40600.54211.03910.147*
C60.4354 (3)0.4324 (5)1.1124 (4)0.1071 (17)
C70.4737 (3)0.4002 (4)1.2129 (4)0.1107 (16)
H7A0.47960.33661.22280.133*
C80.4034 (3)0.3681 (5)1.0312 (4)0.1074 (16)
C90.3451 (3)0.3246 (4)0.8750 (4)0.1014 (15)
C100.2980 (3)0.3296 (4)0.7657 (4)0.0948 (13)
C110.2710 (3)0.4006 (4)0.7014 (4)0.0964 (13)
C120.2256 (3)0.5477 (4)0.7441 (4)0.1291 (18)
H12A0.20300.53110.80990.155*
H12B0.18200.54450.68210.155*
C130.2629 (3)0.6454 (4)0.7548 (5)0.1299 (19)
H13A0.30860.65040.71340.156*
H13B0.22190.69150.72810.156*
C140.2906 (3)0.6583 (4)0.8693 (5)0.133 (2)
H14A0.33250.61140.88820.160*
H14B0.24440.63980.90540.160*
C150.3226 (3)0.7401 (4)0.9256 (4)0.1344 (19)
H15A0.33660.72691.00240.202*
H15B0.28180.78820.91560.202*
H15C0.37090.76020.89670.202*
C160.2334 (3)0.3697 (4)0.5944 (4)0.1108 (16)
C170.2452 (3)0.4653 (4)0.4567 (4)0.1100 (15)
H17A0.27660.41220.43780.132*
H17B0.28340.50800.49800.132*
C180.2077 (3)0.5116 (4)0.3538 (4)0.1224 (17)
H18A0.16480.47090.31840.147*
H18B0.18070.56720.37450.147*
C190.2573 (3)0.5376 (4)0.2730 (4)0.1191 (17)
H19A0.28800.48420.25340.143*
H19B0.29640.58470.30270.143*
C200.2018 (4)0.5762 (4)0.1680 (5)0.161 (2)
H20A0.23580.59200.11370.242*
H20B0.17320.63050.18710.242*
H20C0.16260.52980.13930.242*
C210.2166 (3)0.2781 (4)0.5906 (3)0.0928 (12)
C220.1734 (3)0.2329 (4)0.4973 (4)0.0921 (13)
C230.0989 (3)0.1984 (5)0.3461 (5)0.1063 (16)
C240.0474 (3)0.2255 (6)0.2409 (5)0.1150 (17)
C250.0259 (3)0.3153 (5)0.2097 (5)0.1220 (19)
H25A0.04380.36330.25770.146*
C26−0.0201 (3)0.3368 (4)0.1127 (6)0.1280 (19)
H26A−0.03360.39800.09480.154*
C27−0.0465 (4)0.2655 (6)0.0408 (5)0.130 (2)
H27A−0.07880.2768−0.02630.156*
C28−0.0232 (4)0.1798 (6)0.0728 (5)0.126 (2)
C290.0204 (3)0.1594 (4)0.1728 (5)0.1141 (17)
H29A0.03100.09790.19260.137*
C30−0.0652 (4)0.1206 (4)−0.0041 (5)0.150 (2)
H30A−0.07510.06450.03350.225*
H30B−0.02900.1080−0.05680.225*
H30C−0.11640.1446−0.04090.225*
U11U22U33U12U13U23
S0.0992 (8)0.0908 (9)0.0966 (8)−0.0007 (7)0.0129 (6)0.0017 (7)
N10.094 (3)0.108 (3)0.098 (3)0.001 (3)0.006 (2)−0.003 (3)
O10.100 (2)0.117 (3)0.090 (2)0.0008 (19)0.0034 (16)0.002 (2)
C10.130 (4)0.115 (4)0.093 (3)−0.009 (3)0.014 (3)−0.019 (3)
O20.099 (2)0.106 (3)0.106 (2)0.014 (2)0.0213 (16)−0.011 (2)
N20.096 (3)0.111 (4)0.094 (3)0.017 (2)0.001 (2)−0.004 (2)
C20.099 (3)0.113 (4)0.085 (3)−0.011 (3)0.007 (2)−0.011 (3)
O30.123 (2)0.107 (3)0.097 (2)0.000 (2)0.0192 (18)0.020 (2)
N30.129 (4)0.115 (4)0.099 (3)0.005 (3)0.010 (2)0.013 (3)
C30.140 (4)0.122 (5)0.089 (3)−0.032 (4)−0.007 (3)−0.022 (3)
O40.095 (2)0.108 (3)0.101 (2)0.004 (2)0.0117 (16)0.006 (2)
C40.098 (3)0.121 (5)0.115 (4)−0.014 (3)0.023 (3)−0.017 (4)
N40.107 (3)0.117 (4)0.099 (3)−0.004 (3)0.014 (2)−0.016 (3)
C50.097 (4)0.149 (6)0.116 (4)0.007 (4)−0.004 (3)−0.010 (5)
C60.112 (4)0.131 (5)0.079 (3)0.000 (4)0.014 (3)−0.001 (4)
C70.097 (3)0.118 (5)0.118 (4)−0.008 (3)0.020 (3)−0.003 (4)
C80.100 (4)0.131 (5)0.091 (3)0.006 (4)0.013 (3)0.005 (4)
C90.101 (3)0.115 (5)0.086 (3)−0.011 (3)0.002 (2)−0.008 (3)
C100.099 (3)0.098 (4)0.085 (3)−0.001 (3)0.006 (2)0.008 (3)
C110.100 (3)0.096 (4)0.097 (3)−0.005 (3)0.029 (3)−0.010 (3)
C120.117 (4)0.122 (5)0.145 (4)0.005 (4)0.007 (3)−0.014 (4)
C130.136 (5)0.124 (5)0.135 (5)0.018 (4)0.036 (4)0.026 (4)
C140.126 (4)0.142 (5)0.132 (4)0.013 (4)0.020 (3)0.000 (4)
C150.138 (4)0.146 (5)0.126 (4)0.026 (4)0.041 (3)0.022 (4)
C160.145 (5)0.090 (4)0.093 (3)0.002 (4)0.004 (3)0.007 (3)
C170.122 (4)0.100 (4)0.109 (3)−0.001 (3)0.017 (3)0.009 (3)
C180.146 (4)0.098 (4)0.128 (4)0.001 (3)0.036 (3)−0.005 (3)
C190.142 (5)0.092 (4)0.128 (4)−0.005 (3)0.035 (4)−0.021 (3)
C200.192 (6)0.118 (5)0.169 (6)−0.007 (4)0.010 (5)0.037 (4)
C210.102 (3)0.094 (3)0.080 (3)0.010 (3)0.005 (2)0.008 (3)
C220.083 (3)0.102 (4)0.090 (3)0.002 (3)0.009 (2)0.009 (3)
C230.107 (4)0.107 (5)0.105 (4)−0.014 (4)0.015 (3)−0.010 (4)
C240.098 (4)0.144 (6)0.104 (4)−0.010 (4)0.015 (3)0.001 (4)
C250.106 (4)0.142 (6)0.118 (4)−0.001 (4)0.016 (3)−0.021 (4)
C260.113 (4)0.118 (5)0.154 (5)−0.006 (4)0.023 (4)0.004 (5)
C270.117 (4)0.148 (6)0.125 (5)−0.013 (5)0.020 (4)−0.006 (5)
C280.115 (5)0.150 (7)0.115 (5)−0.010 (5)0.021 (4)−0.018 (5)
C290.102 (4)0.123 (5)0.115 (4)−0.010 (3)0.008 (3)−0.011 (4)
C300.142 (5)0.169 (6)0.143 (5)−0.009 (5)0.035 (4)0.007 (5)
S—C211.655 (4)C13—H13A0.9700
S—C101.777 (5)C13—H13B0.9700
N1—C81.246 (6)C14—C151.432 (6)
N1—N21.427 (5)C14—H14A0.9700
O1—C91.384 (5)C14—H14B0.9700
O1—C81.427 (5)C15—H15A0.9600
C1—C21.556 (6)C15—H15B0.9600
C1—H1B0.9600C15—H15C0.9600
C1—H1C0.9600C16—C211.350 (6)
C1—H1D0.9600C17—C181.486 (6)
O2—C111.337 (5)C17—H17A0.9700
O2—C121.385 (5)C17—H17B0.9700
N2—C91.274 (6)C18—C191.426 (6)
C2—C31.318 (6)C18—H18A0.9700
C2—C71.352 (6)C18—H18B0.9700
O3—C171.264 (4)C19—C201.574 (6)
O3—C161.456 (5)C19—H19A0.9700
N3—C221.292 (5)C19—H19B0.9700
N3—N41.409 (5)C20—H20A0.9600
C3—C41.413 (6)C20—H20B0.9600
C3—H3B0.9300C20—H20C0.9600
O4—C221.300 (5)C21—C221.420 (6)
O4—C231.394 (6)C23—C241.496 (7)
C4—C51.472 (7)C24—C291.306 (7)
C4—H4A0.9300C24—C251.383 (7)
N4—C231.240 (6)C25—C261.355 (7)
C5—C61.257 (7)C25—H25A0.9300
C5—H5A0.9300C26—C271.386 (7)
C6—C71.387 (6)C26—H26A0.9300
C6—C81.410 (7)C27—C281.338 (8)
C7—H7A0.9300C27—H27A0.9300
C9—C101.456 (6)C28—C291.366 (7)
C10—C111.332 (6)C28—C301.383 (7)
C11—C161.444 (6)C29—H29A0.9300
C12—C131.536 (6)C30—H30A0.9600
C12—H12A0.9700C30—H30B0.9600
C12—H12B0.9700C30—H30C0.9600
C13—C141.431 (6)
C21—S—C1092.6 (3)H15A—C15—H15B109.5
C8—N1—N2109.3 (5)C14—C15—H15C109.5
C9—O1—C897.8 (4)H15A—C15—H15C109.5
C2—C1—H1B109.5H15B—C15—H15C109.5
C2—C1—H1C109.5C21—C16—C11113.1 (5)
H1B—C1—H1C109.5C21—C16—O3125.0 (5)
C2—C1—H1D109.5C11—C16—O3118.5 (5)
H1B—C1—H1D109.5O3—C17—C18114.7 (4)
H1C—C1—H1D109.5O3—C17—H17A108.6
C11—O2—C12118.1 (4)C18—C17—H17A108.6
C9—N2—N1102.5 (4)O3—C17—H17B108.6
C3—C2—C7119.9 (5)C18—C17—H17B108.6
C3—C2—C1120.7 (5)H17A—C17—H17B107.6
C7—C2—C1119.4 (5)C19—C18—C17120.5 (5)
C17—O3—C16109.2 (4)C19—C18—H18A107.2
C22—N3—N4108.6 (4)C17—C18—H18A107.2
C2—C3—C4123.5 (5)C19—C18—H18B107.2
C2—C3—H3B118.3C17—C18—H18B107.2
C4—C3—H3B118.3H18A—C18—H18B106.8
C22—O4—C23104.8 (4)C18—C19—C20110.3 (5)
C3—C4—C5109.0 (5)C18—C19—H19A109.6
C3—C4—H4A125.5C20—C19—H19A109.6
C5—C4—H4A125.5C18—C19—H19B109.6
C23—N4—N3104.7 (5)C20—C19—H19B109.6
C6—C5—C4130.3 (6)H19A—C19—H19B108.1
C6—C5—H5A114.8C19—C20—H20A109.5
C4—C5—H5A114.8C19—C20—H20B109.5
C5—C6—C7113.7 (6)H20A—C20—H20B109.5
C5—C6—C8127.1 (6)C19—C20—H20C109.5
C7—C6—C8119.2 (6)H20A—C20—H20C109.5
C2—C7—C6123.4 (6)H20B—C20—H20C109.5
C2—C7—H7A118.3C16—C21—C22123.6 (5)
C6—C7—H7A118.3C16—C21—S111.6 (4)
N1—C8—C6131.1 (6)C22—C21—S124.5 (4)
N1—C8—O1112.6 (5)N3—C22—O4109.7 (5)
C6—C8—O1115.8 (6)N3—C22—C21123.1 (5)
N2—C9—O1117.4 (4)O4—C22—C21127.0 (5)
N2—C9—C10124.7 (5)N4—C23—O4112.0 (5)
O1—C9—C10117.9 (5)N4—C23—C24132.7 (6)
C11—C10—C9132.5 (5)O4—C23—C24115.3 (6)
C11—C10—S109.5 (4)C29—C24—C25117.2 (6)
C9—C10—S117.9 (4)C29—C24—C23117.6 (7)
C10—C11—O2122.4 (5)C25—C24—C23125.2 (6)
C10—C11—C16111.6 (5)C26—C25—C24123.1 (6)
O2—C11—C16125.2 (5)C26—C25—H25A118.4
O2—C12—C13106.1 (5)C24—C25—H25A118.4
O2—C12—H12A110.5C25—C26—C27118.6 (7)
C13—C12—H12A110.5C25—C26—H26A120.7
O2—C12—H12B110.5C27—C26—H26A120.7
C13—C12—H12B110.5C28—C27—C26116.6 (7)
H12A—C12—H12B108.7C28—C27—H27A121.7
C14—C13—C12105.6 (5)C26—C27—H27A121.7
C14—C13—H13A110.6C27—C28—C29123.7 (7)
C12—C13—H13A110.6C27—C28—C30106.0 (7)
C14—C13—H13B110.6C29—C28—C30129.1 (8)
C12—C13—H13B110.6C24—C29—C28120.5 (7)
H13A—C13—H13B108.7C24—C29—H29A119.7
C13—C14—C15128.9 (6)C28—C29—H29A119.7
C13—C14—H14A105.1C28—C30—H30A107.0
C15—C14—H14A105.1C28—C30—H30B106.6
C13—C14—H14B105.1H30A—C30—H30B109.5
C15—C14—H14B105.1C28—C30—H30C114.7
H14A—C14—H14B105.9H30A—C30—H30C109.5
C14—C15—H15A109.5H30B—C30—H30C109.5
C14—C15—H15B109.5
C8—N1—N2—C95.5 (6)O2—C11—C16—C21−176.0 (4)
C7—C2—C3—C41.6 (9)C10—C11—C16—O3174.7 (4)
C1—C2—C3—C4−178.1 (4)O2—C11—C16—O3−15.8 (7)
C2—C3—C4—C51.9 (7)C17—O3—C16—C21−108.3 (6)
C22—N3—N4—C23−2.9 (6)C17—O3—C16—C1194.0 (5)
C3—C4—C5—C6−3.9 (9)C16—O3—C17—C18161.7 (4)
C4—C5—C6—C71.8 (10)O3—C17—C18—C19−174.0 (5)
C4—C5—C6—C8−178.8 (5)C17—C18—C19—C20174.6 (4)
C3—C2—C7—C6−4.2 (8)C11—C16—C21—C22174.4 (4)
C1—C2—C7—C6175.5 (4)O3—C16—C21—C2215.8 (8)
C5—C6—C7—C22.5 (8)C11—C16—C21—S−12.2 (6)
C8—C6—C7—C2−177.0 (5)O3—C16—C21—S−170.9 (4)
N2—N1—C8—C6−177.4 (5)C10—S—C21—C165.6 (4)
N2—N1—C8—O1−6.6 (6)C10—S—C21—C22178.9 (4)
C5—C6—C8—N1168.7 (6)N4—N3—C22—O44.3 (5)
C7—C6—C8—N1−11.9 (9)N4—N3—C22—C21179.2 (4)
C5—C6—C8—O1−1.8 (9)C23—O4—C22—N3−3.9 (5)
C7—C6—C8—O1177.6 (4)C23—O4—C22—C21−178.5 (4)
C9—O1—C8—N14.7 (5)C16—C21—C22—N3170.8 (5)
C9—O1—C8—C6177.0 (4)S—C21—C22—N3−1.6 (7)
N1—N2—C9—O1−2.5 (6)C16—C21—C22—O4−15.3 (8)
N1—N2—C9—C10179.4 (4)S—C21—C22—O4172.3 (3)
C8—O1—C9—N2−0.9 (5)N3—N4—C23—O40.4 (6)
C8—O1—C9—C10177.2 (4)N3—N4—C23—C24−178.7 (5)
N2—C9—C10—C11−176.1 (5)C22—O4—C23—N42.1 (6)
O1—C9—C10—C115.9 (8)C22—O4—C23—C24−178.6 (4)
N2—C9—C10—S8.1 (7)N4—C23—C24—C29−4.4 (9)
O1—C9—C10—S−169.9 (3)O4—C23—C24—C29176.6 (4)
C21—S—C10—C112.7 (4)N4—C23—C24—C25175.6 (6)
C21—S—C10—C9179.4 (4)O4—C23—C24—C25−3.4 (8)
C9—C10—C11—O24.4 (8)C29—C24—C25—C26−0.9 (8)
S—C10—C11—O2−179.6 (3)C23—C24—C25—C26179.1 (5)
C9—C10—C11—C16174.3 (5)C24—C25—C26—C27−0.4 (8)
S—C10—C11—C16−9.7 (5)C25—C26—C27—C28−0.9 (8)
C12—O2—C11—C10−116.6 (5)C26—C27—C28—C293.6 (9)
C12—O2—C11—C1674.9 (6)C26—C27—C28—C30172.3 (5)
C11—O2—C12—C13−170.5 (4)C25—C24—C29—C283.5 (8)
O2—C12—C13—C14−90.1 (5)C23—C24—C29—C28−176.5 (5)
C12—C13—C14—C15−173.2 (6)C27—C28—C29—C24−5.2 (9)
C10—C11—C16—C2114.5 (6)C30—C28—C29—C24−171.1 (6)
  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  New thiophene analogues of kenpaullone: synthesis and biological evaluation in breast cancer cells.

Authors:  Laurent Brault; Evelyne Migianu; Adrien Néguesque; Eric Battaglia; Denyse Bagrel; Gilbert Kirsch
Journal:  Eur J Med Chem       Date:  2005-04-12       Impact factor: 6.514

  2 in total

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