Literature DB >> 21582261

Bis(4-methyl-imidazolium) succinate succinic acid solvate.

Guihuan Du, Zuli Liu, Qian Chu, Zhen Li, Suming Zhang.   

Abstract

In the title compound, 2C(4)H(7)N(2) (+)·C(4)H(4)O(4) (2-)·C(4)H(6)O(4), the asymmetric unit consists of two 4-methyl-imidazolium cations, one succinate dianion and one netrual succinic acid mol-ecule and within the latter components, the C-O, C=O and C O bonds are clearly evidenced from their relative distances. In the crystal structure, the individual components are linked by inter-molecular N-H⋯O, O-H⋯O and C-H⋯O hydrogen bonds into a two-dimensional network parallel to the (101) plane in which R(3) (3)(9), R(3) (3)(12) and R(4) (4)(18) hydrogen-bond motifs are present.

Entities:  

Year:  2009        PMID: 21582261      PMCID: PMC2968489          DOI: 10.1107/S1600536809006205

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background on co-crystals, see: Aakeröy & Salmon (2005 ▶); Aakeröy et al. (2007 ▶); Childs & Hardcastle (2007 ▶); Childs et al. (2007 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

2C4H7N2 +·C4H4O4 2−·C4H6O4 M = 400.39 Monoclinic, a = 17.260 (5) Å b = 14.066 (4) Å c = 7.761 (2) Å β = 95.008 (6)° V = 1877.0 (9) Å3 Z = 4 Mo Kα radiation μ = 0.12 mm−1 T = 296 K 0.30 × 0.10 × 0.04 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.957, T max = 0.995 20337 measured reflections 4080 independent reflections 2197 reflections with I > 2σ(I) R int = 0.063

Refinement

R[F 2 > 2σ(F 2)] = 0.056 wR(F 2) = 0.153 S = 0.95 4080 reflections 273 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.28 e Å−3 Δρmin = −0.25 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT-Plus (Bruker, 2001 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: PLATON. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809006205/lh2776sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809006205/lh2776Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
2C4H7N2+·C4H4O42·C4H6O4F(000) = 848
Mr = 400.39Dx = 1.417 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2035 reflections
a = 17.260 (5) Åθ = 2.4–21.1°
b = 14.066 (4) ŵ = 0.12 mm1
c = 7.761 (2) ÅT = 296 K
β = 95.008 (6)°Plate, colorless
V = 1877.0 (9) Å30.30 × 0.10 × 0.04 mm
Z = 4
Bruker SMART APEX CCD area-detector diffractometer4080 independent reflections
Radiation source: fine focus sealed Siemens Mo tube2197 reflections with I > 2σ(I)
graphiteRint = 0.063
0.3° wide ω exposures scansθmax = 27.0°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −22→22
Tmin = 0.957, Tmax = 0.995k = −17→17
20337 measured reflectionsl = −8→9
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.056Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.153H atoms treated by a mixture of independent and constrained refinement
S = 0.95w = 1/[σ2(Fo2) + (0.0817P)2] where P = (Fo2 + 2Fc2)/3
4080 reflections(Δ/σ)max < 0.001
273 parametersΔρmax = 0.28 e Å3
0 restraintsΔρmin = −0.25 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.45695 (11)0.47579 (16)0.7860 (3)0.0375 (6)
C20.50516 (13)0.33293 (17)0.7523 (3)0.0476 (6)
H20.53800.28390.72470.057*
C30.40700 (12)0.41101 (16)0.8406 (3)0.0431 (6)
H30.35970.42410.88470.052*
C40.45464 (13)0.58059 (16)0.7747 (3)0.0498 (7)
H4A0.43670.59930.65900.075*
H4B0.50590.60570.80360.075*
H4C0.41990.60500.85400.075*
C50.96099 (11)0.34301 (16)0.3015 (3)0.0342 (5)
C60.91078 (12)0.40732 (16)0.3567 (3)0.0404 (6)
H60.86650.39360.41220.049*
C71.00090 (12)0.48664 (17)0.2388 (3)0.0435 (6)
H71.03020.53610.19860.052*
C80.96426 (13)0.23840 (16)0.3093 (3)0.0454 (6)
H8A0.92130.21500.36760.068*
H8B1.01220.21900.37140.068*
H8C0.96140.21310.19410.068*
C90.83954 (12)0.73296 (15)0.4322 (3)0.0327 (5)
C100.76053 (11)0.71074 (15)0.4945 (3)0.0352 (5)
H10A0.75580.74460.60200.042*
H10B0.72060.73480.41010.042*
C110.74541 (12)0.60712 (15)0.5235 (3)0.0377 (6)
H11A0.78650.58240.60460.045*
H11B0.74820.57370.41500.045*
C120.66724 (12)0.58515 (15)0.5925 (3)0.0374 (6)
C130.70985 (12)0.28540 (16)0.5270 (3)0.0380 (6)
C140.76523 (12)0.20813 (16)0.4875 (3)0.0398 (6)
H14A0.81330.21650.56040.048*
H14B0.77720.21450.36820.048*
C150.73494 (12)0.10900 (16)0.5142 (3)0.0449 (6)
H15A0.72410.10200.63410.054*
H15B0.68630.10090.44310.054*
C160.79014 (13)0.03232 (16)0.4709 (3)0.0410 (6)
N10.43813 (11)0.32252 (14)0.8197 (3)0.0457 (5)
H10.4148 (14)0.2622 (18)0.842 (3)0.055*
N20.51776 (10)0.42424 (13)0.7306 (3)0.0413 (5)
H2A0.5629 (13)0.4491 (16)0.678 (3)0.050*
N30.93627 (10)0.49658 (14)0.3170 (2)0.0433 (5)
H3A0.9102 (13)0.5635 (17)0.342 (3)0.052*
N41.01708 (10)0.39539 (13)0.2269 (2)0.0386 (5)
H41.0622 (13)0.3685 (15)0.177 (3)0.046*
O10.88428 (9)0.66845 (11)0.3982 (2)0.0565 (5)
O20.85672 (8)0.82023 (10)0.4172 (2)0.0453 (4)
O30.65044 (8)0.49741 (10)0.6087 (2)0.0461 (4)
O40.62385 (9)0.64950 (11)0.6310 (3)0.0647 (6)
O50.73726 (9)0.37014 (12)0.5060 (2)0.0542 (5)
H50.7020 (17)0.419 (2)0.544 (3)0.081*
O60.64637 (10)0.27081 (12)0.5766 (3)0.0671 (6)
O70.84928 (10)0.04663 (12)0.4027 (3)0.0639 (6)
O80.76793 (10)−0.05217 (12)0.5142 (3)0.0605 (6)
H80.8020 (17)−0.105 (2)0.473 (4)0.091*
U11U22U33U12U13U23
C10.0270 (11)0.0344 (13)0.0528 (14)0.0012 (9)0.0138 (10)−0.0009 (11)
C20.0344 (13)0.0358 (15)0.0763 (18)−0.0018 (11)0.0253 (12)−0.0020 (13)
C30.0284 (12)0.0410 (15)0.0625 (16)−0.0039 (11)0.0202 (11)0.0011 (12)
C40.0381 (14)0.0369 (15)0.0772 (18)−0.0010 (11)0.0215 (13)0.0039 (13)
C50.0255 (10)0.0325 (13)0.0465 (14)−0.0003 (9)0.0148 (10)−0.0016 (10)
C60.0282 (12)0.0356 (14)0.0606 (16)0.0007 (10)0.0217 (11)−0.0004 (11)
C70.0356 (13)0.0347 (15)0.0629 (16)−0.0005 (10)0.0199 (11)−0.0009 (12)
C80.0384 (13)0.0350 (14)0.0663 (17)0.0041 (10)0.0233 (12)0.0009 (12)
C90.0264 (11)0.0247 (12)0.0488 (14)−0.0004 (9)0.0130 (10)−0.0008 (10)
C100.0279 (11)0.0303 (13)0.0497 (14)−0.0003 (9)0.0167 (10)0.0027 (10)
C110.0284 (11)0.0291 (13)0.0583 (15)−0.0022 (9)0.0186 (11)0.0014 (11)
C120.0307 (12)0.0264 (13)0.0573 (16)0.0006 (10)0.0162 (11)−0.0019 (11)
C130.0300 (11)0.0330 (14)0.0532 (15)0.0001 (10)0.0164 (10)0.0005 (11)
C140.0293 (12)0.0372 (14)0.0553 (15)0.0034 (10)0.0167 (11)−0.0011 (11)
C150.0314 (12)0.0370 (15)0.0693 (17)0.0051 (10)0.0222 (12)−0.0016 (12)
C160.0322 (12)0.0341 (14)0.0594 (15)0.0004 (10)0.0184 (11)−0.0030 (11)
N10.0371 (11)0.0327 (12)0.0697 (14)−0.0074 (9)0.0195 (10)0.0020 (10)
N20.0298 (10)0.0333 (12)0.0639 (13)−0.0044 (8)0.0223 (9)0.0000 (10)
N30.0353 (10)0.0325 (12)0.0645 (14)0.0056 (9)0.0183 (9)−0.0042 (10)
N40.0280 (10)0.0344 (12)0.0561 (13)0.0016 (8)0.0200 (9)−0.0018 (9)
O10.0422 (10)0.0304 (10)0.1026 (14)0.0040 (7)0.0383 (9)−0.0027 (9)
O20.0326 (9)0.0257 (9)0.0821 (12)−0.0009 (7)0.0309 (8)0.0033 (8)
O30.0342 (8)0.0266 (9)0.0819 (12)−0.0027 (7)0.0300 (8)0.0026 (8)
O40.0474 (10)0.0309 (10)0.1235 (16)0.0039 (8)0.0513 (11)−0.0015 (10)
O50.0409 (9)0.0291 (10)0.0980 (15)0.0005 (7)0.0368 (10)−0.0032 (9)
O60.0406 (10)0.0420 (11)0.1255 (16)0.0021 (8)0.0465 (11)0.0062 (10)
O70.0452 (10)0.0430 (11)0.1108 (15)0.0044 (8)0.0480 (10)0.0016 (10)
O80.0464 (10)0.0310 (11)0.1109 (16)0.0043 (8)0.0453 (10)0.0041 (10)
C1—C31.348 (3)C10—C111.501 (3)
C1—N21.375 (3)C10—H10A0.9700
C1—C41.477 (3)C10—H10B0.9700
C2—N21.316 (3)C11—C121.526 (3)
C2—N11.319 (3)C11—H11A0.9700
C2—H20.9300C11—H11B0.9700
C3—N11.371 (3)C12—O41.228 (3)
C3—H30.9300C12—O31.276 (2)
C4—H4A0.9600C13—O61.210 (2)
C4—H4B0.9600C13—O51.298 (3)
C4—H4C0.9600C13—C141.497 (3)
C5—C61.348 (3)C14—C151.510 (3)
C5—N41.383 (3)C14—H14A0.9700
C5—C81.474 (3)C14—H14B0.9700
C6—N31.374 (3)C15—C161.497 (3)
C6—H60.9300C15—H15A0.9700
C7—N41.319 (3)C15—H15B0.9700
C7—N31.323 (3)C16—O71.207 (2)
C7—H70.9300C16—O81.302 (3)
C8—H8A0.9600N1—H10.96 (2)
C8—H8B0.9600N2—H2A0.97 (2)
C8—H8C0.9600N3—H3A1.07 (2)
C9—O11.235 (2)N4—H40.98 (2)
C9—O21.271 (2)O5—H50.98 (3)
C9—C101.519 (3)O8—H81.02 (3)
C3—C1—N2105.6 (2)C10—C11—H11A108.6
C3—C1—C4132.7 (2)C12—C11—H11A108.6
N2—C1—C4121.66 (19)C10—C11—H11B108.6
N2—C2—N1108.6 (2)C12—C11—H11B108.6
N2—C2—H2125.7H11A—C11—H11B107.5
N1—C2—H2125.7O4—C12—O3122.69 (19)
C1—C3—N1107.98 (19)O4—C12—C11120.84 (19)
C1—C3—H3126.0O3—C12—C11116.47 (18)
N1—C3—H3126.0O6—C13—O5123.1 (2)
C1—C4—H4A109.5O6—C13—C14123.7 (2)
C1—C4—H4B109.5O5—C13—C14113.25 (18)
H4A—C4—H4B109.5C13—C14—C15114.05 (17)
C1—C4—H4C109.5C13—C14—H14A108.7
H4A—C4—H4C109.5C15—C14—H14A108.7
H4B—C4—H4C109.5C13—C14—H14B108.7
C6—C5—N4105.58 (19)C15—C14—H14B108.7
C6—C5—C8132.85 (19)H14A—C14—H14B107.6
N4—C5—C8121.57 (18)C16—C15—C14113.57 (18)
C5—C6—N3108.32 (18)C16—C15—H15A108.9
C5—C6—H6125.8C14—C15—H15A108.9
N3—C6—H6125.8C16—C15—H15B108.9
N4—C7—N3109.1 (2)C14—C15—H15B108.9
N4—C7—H7125.4H15A—C15—H15B107.7
N3—C7—H7125.4O7—C16—O8123.0 (2)
C5—C8—H8A109.5O7—C16—C15123.9 (2)
C5—C8—H8B109.5O8—C16—C15113.10 (19)
H8A—C8—H8B109.5C2—N1—C3108.21 (19)
C5—C8—H8C109.5C2—N1—H1124.3 (15)
H8A—C8—H8C109.5C3—N1—H1127.4 (15)
H8B—C8—H8C109.5C2—N2—C1109.59 (18)
O1—C9—O2122.35 (18)C2—N2—H2A123.4 (13)
O1—C9—C10120.83 (19)C1—N2—H2A126.9 (13)
O2—C9—C10116.82 (18)C7—N3—C6107.79 (19)
C11—C10—C9114.85 (17)C7—N3—H3A124.3 (12)
C11—C10—H10A108.6C6—N3—H3A127.9 (12)
C9—C10—H10A108.6C7—N4—C5109.20 (18)
C11—C10—H10B108.6C7—N4—H4126.0 (13)
C9—C10—H10B108.6C5—N4—H4124.8 (13)
H10A—C10—H10B107.5C13—O5—H5111.4 (16)
C10—C11—C12114.83 (17)C16—O8—H8113.4 (16)
N2—C1—C3—N10.7 (3)C14—C15—C16—O7−8.0 (4)
C4—C1—C3—N1179.0 (3)C14—C15—C16—O8172.0 (2)
N4—C5—C6—N3−0.3 (3)N2—C2—N1—C30.3 (3)
C8—C5—C6—N3179.4 (2)C1—C3—N1—C2−0.6 (3)
O1—C9—C10—C114.6 (3)N1—C2—N2—C10.1 (3)
O2—C9—C10—C11−175.4 (2)C3—C1—N2—C2−0.5 (3)
C9—C10—C11—C12177.83 (19)C4—C1—N2—C2−179.0 (2)
C10—C11—C12—O4−4.7 (3)N4—C7—N3—C60.2 (3)
C10—C11—C12—O3175.8 (2)C5—C6—N3—C70.0 (3)
O6—C13—C14—C150.2 (4)N3—C7—N4—C5−0.4 (3)
O5—C13—C14—C15179.0 (2)C6—C5—N4—C70.4 (3)
C13—C14—C15—C16178.83 (19)C8—C5—N4—C7−179.3 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1···O4i0.96 (2)1.74 (2)2.699 (3)176 (2)
N2—H2A···O30.97 (2)1.78 (2)2.752 (2)173.0 (19)
N3—H3A···O11.07 (2)1.61 (2)2.673 (2)170.6 (19)
N4—H4···O2ii0.98 (2)1.77 (2)2.745 (2)178.8 (19)
O5—H5···O30.98 (3)1.53 (3)2.509 (2)177 (3)
O8—H8···O2iii1.02 (3)1.50 (3)2.518 (2)176 (3)
C2—H2···O60.932.293.024 (3)136
C3—H3···O8iv0.932.433.354 (3)176
C6—H6···O50.932.433.346 (3)169
C7—H7···O7v0.932.293.017 (3)134
Table 1

Selected bond lengths (Å)

C9—O11.235 (2)
C9—O21.271 (2)
C12—O41.228 (3)
C12—O31.276 (2)
C13—O61.210 (2)
C13—O51.298 (3)
C16—O71.207 (2)
C16—O81.302 (3)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O4i0.96 (2)1.74 (2)2.699 (3)176 (2)
N2—H2A⋯O30.97 (2)1.78 (2)2.752 (2)173.0 (19)
N3—H3A⋯O11.07 (2)1.61 (2)2.673 (2)170.6 (19)
N4—H4⋯O2ii0.98 (2)1.77 (2)2.745 (2)178.8 (19)
O5—H5⋯O30.98 (3)1.53 (3)2.509 (2)177 (3)
O8—H8⋯O2iii1.02 (3)1.50 (3)2.518 (2)176 (3)
C2—H2⋯O60.932.293.024 (3)136
C3—H3⋯O8iv0.932.433.354 (3)176
C6—H6⋯O50.932.433.346 (3)169
C7—H7⋯O7v0.932.293.017 (3)134

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

  4 in total

1.  The salt-cocrystal continuum: the influence of crystal structure on ionization state.

Authors:  Scott L Childs; G Patrick Stahly; Aeri Park
Journal:  Mol Pharm       Date:  2007-04-27       Impact factor: 4.939

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Cocrystal or salt: does it really matter?

Authors:  Christer B Aakeröy; Meg E Fasulo; John Desper
Journal:  Mol Pharm       Date:  2007-05-11       Impact factor: 4.939

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total
  1 in total

1.  Crystal structure of the bis-(cyclo-hexyl-ammonium) succinate succinic acid salt adduct.

Authors:  Modou Sarr; Aminata Diasse-Sarr; Libasse Diop; Laurent Plasseraud; Hélène Cattey
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-07-08
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.