Literature DB >> 21582246

6-(2,6-Dimethyl-phen-yl)pyrido[2,3-d]pyrimidin-7-amine.

Seiji Nukui, Arnold L Rheingold, Antonio Dipasquale, Alex Yanovsky.   

Abstract

In the title compound, C(15)H(14)N(4), the pyrido[2,3-d]pyrimidine system is almost ideally planar (r.m.s. deviation 0.028 Å) with its mean plane almost orthogonal to the 2,6-dimethyl-phenyl plane. The dihedral angle formed by these planes [87.3 (2)°] is close to the predicted value (89.7°) obtained by mol-ecular-mechanics force-field calculations. Only one of the two active amine H atoms participates in hydrogen bonding, which links mol-ecules into centrosymmetric dimers.

Entities:  

Year:  2009        PMID: 21582246      PMCID: PMC2968671          DOI: 10.1107/S1600536809006242

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structures of related pyrido[2,3-d]pyrimidine derivatives, see: Hamby et al. (1997 ▶); Trumpp-Kallmeyer et al. (1998 ▶). For the synthesis of the title compound, see: Bennett et al. (1981 ▶); Blankley & Bennett (1981 ▶). For mol­ecular-mechanics force-field calculations, see: Duan et al. (2003 ▶).

Experimental

Crystal data

C15H14N4 M = 250.30 Monoclinic, a = 16.272 (3) Å b = 10.644 (2) Å c = 15.234 (3) Å β = 109.118 (3)° V = 2493.0 (8) Å3 Z = 8 Mo Kα radiation μ = 0.08 mm−1 T = 208 K 0.14 × 0.06 × 0.06 mm

Data collection

Bruker Kappa APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.988, T max = 0.995 6161 measured reflections 2863 independent reflections 1706 reflections with I > 2σ(I) R int = 0.037

Refinement

R[F 2 > 2σ(F 2)] = 0.054 wR(F 2) = 0.152 S = 0.98 2863 reflections 174 parameters H-atom parameters constrained Δρmax = 0.22 e Å−3 Δρmin = −0.22 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SIR2004 (Burla et al., 2005 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-32 (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809006242/rz2295sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809006242/rz2295Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H14N4F(000) = 1056
Mr = 250.30Dx = 1.334 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 1859 reflections
a = 16.272 (3) Åθ = 2.3–27.8°
b = 10.644 (2) ŵ = 0.08 mm1
c = 15.234 (3) ÅT = 208 K
β = 109.118 (3)°Block, colorless
V = 2493.0 (8) Å30.14 × 0.06 × 0.06 mm
Z = 8
Bruker Kappa-APEX2 CCD area-detector diffractometer2863 independent reflections
Radiation source: fine-focus sealed tube1706 reflections with I > 2σ(I)
graphiteRint = 0.037
φ and ω scansθmax = 28.2°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Bruker, 2001)h = −21→21
Tmin = 0.988, Tmax = 0.995k = −13→10
6161 measured reflectionsl = −11→20
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.054Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.152H-atom parameters constrained
S = 0.98w = 1/[σ2(Fo2) + (0.0773P)2] where P = (Fo2 + 2Fc2)/3
2863 reflections(Δ/σ)max < 0.001
174 parametersΔρmax = 0.22 e Å3
0 restraintsΔρmin = −0.22 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.60306 (12)0.28432 (17)0.63650 (12)0.0292 (4)
C20.66357 (12)0.27235 (16)0.58459 (13)0.0286 (4)
C30.56152 (12)0.17232 (17)0.46410 (13)0.0298 (4)
C40.46019 (14)0.0833 (2)0.34015 (15)0.0425 (5)
H40.44610.05080.27960.051*
C50.41654 (13)0.12949 (19)0.46163 (14)0.0386 (5)
H50.37430.13000.49140.046*
C60.49866 (12)0.17682 (17)0.50973 (13)0.0309 (4)
C70.52301 (12)0.23505 (18)0.59840 (13)0.0323 (5)
H70.48290.23920.63080.039*
C80.62801 (12)0.35600 (18)0.72563 (13)0.0302 (4)
C90.66754 (12)0.29645 (19)0.81040 (13)0.0322 (5)
C100.68565 (13)0.3677 (2)0.89141 (14)0.0389 (5)
H100.71130.32850.94930.047*
C110.66687 (14)0.4936 (2)0.88847 (15)0.0456 (6)
H110.67980.53990.94390.055*
C120.62906 (14)0.5519 (2)0.80438 (15)0.0451 (6)
H120.61640.63820.80280.054*
C130.60939 (12)0.48549 (19)0.72209 (13)0.0355 (5)
C140.69087 (15)0.1587 (2)0.81607 (15)0.0472 (6)
H14A0.64350.10980.82410.071*
H14B0.74330.14460.86850.071*
H14C0.70080.13310.75920.071*
C150.56830 (15)0.5511 (2)0.63050 (15)0.0500 (6)
H15A0.56640.64080.64090.075*
H15B0.50970.51970.60160.075*
H15C0.60240.53500.59010.075*
N10.64297 (10)0.21747 (15)0.50164 (10)0.0315 (4)
N20.54103 (11)0.12193 (16)0.37767 (11)0.0377 (4)
N30.39463 (11)0.08379 (17)0.37626 (12)0.0435 (5)
N40.74304 (10)0.32180 (15)0.61956 (11)0.0375 (4)
H4A0.77910.31740.58830.045*
H4B0.75870.35840.67360.045*
U11U22U33U12U13U23
C10.0304 (10)0.0319 (10)0.0273 (10)0.0037 (8)0.0122 (8)0.0018 (8)
C20.0303 (10)0.0287 (10)0.0283 (10)0.0014 (8)0.0115 (8)0.0037 (8)
C30.0311 (10)0.0302 (10)0.0292 (10)−0.0008 (8)0.0116 (8)0.0015 (8)
C40.0454 (13)0.0515 (14)0.0317 (11)−0.0075 (10)0.0141 (10)−0.0073 (10)
C50.0325 (11)0.0459 (12)0.0393 (12)−0.0015 (9)0.0142 (9)−0.0036 (10)
C60.0317 (10)0.0326 (11)0.0305 (10)0.0015 (8)0.0129 (8)0.0018 (9)
C70.0303 (11)0.0379 (11)0.0340 (11)0.0029 (8)0.0178 (9)0.0010 (9)
C80.0259 (10)0.0378 (11)0.0312 (10)−0.0020 (8)0.0151 (8)−0.0034 (9)
C90.0281 (10)0.0373 (11)0.0330 (11)−0.0026 (8)0.0124 (9)−0.0010 (9)
C100.0337 (11)0.0530 (14)0.0303 (11)−0.0046 (9)0.0107 (9)−0.0028 (10)
C110.0475 (13)0.0527 (15)0.0372 (13)−0.0062 (10)0.0144 (10)−0.0156 (11)
C120.0474 (13)0.0382 (12)0.0508 (14)0.0008 (10)0.0176 (11)−0.0090 (11)
C130.0358 (11)0.0356 (11)0.0374 (12)−0.0009 (9)0.0149 (9)−0.0018 (9)
C140.0541 (14)0.0454 (14)0.0386 (12)0.0074 (10)0.0105 (10)0.0038 (10)
C150.0591 (15)0.0417 (13)0.0499 (14)0.0078 (11)0.0188 (12)0.0070 (11)
N10.0316 (9)0.0381 (9)0.0289 (9)−0.0014 (7)0.0156 (7)−0.0005 (7)
N20.0390 (10)0.0462 (10)0.0306 (9)−0.0056 (8)0.0150 (8)−0.0052 (8)
N30.0378 (10)0.0520 (12)0.0409 (11)−0.0065 (8)0.0134 (8)−0.0079 (9)
N40.0336 (9)0.0488 (11)0.0347 (9)−0.0064 (8)0.0175 (8)−0.0098 (8)
C1—C71.347 (3)C9—C101.395 (3)
C1—C21.456 (2)C9—C141.510 (3)
C1—C81.493 (2)C10—C111.372 (3)
C2—N11.332 (2)C10—H100.9400
C2—N41.335 (2)C11—C121.374 (3)
C3—N11.348 (2)C11—H110.9400
C3—N21.358 (2)C12—C131.382 (3)
C3—C61.413 (3)C12—H120.9400
C4—N21.317 (3)C13—C151.507 (3)
C4—N31.351 (3)C14—H14A0.9700
C4—H40.9400C14—H14B0.9700
C5—N31.323 (2)C14—H14C0.9700
C5—C61.391 (3)C15—H15A0.9700
C5—H50.9400C15—H15B0.9700
C6—C71.419 (3)C15—H15C0.9700
C7—H70.9400N4—H4A0.8700
C8—C91.392 (3)N4—H4B0.8700
C8—C131.408 (3)
C7—C1—C2117.54 (17)C9—C10—H10119.3
C7—C1—C8121.83 (16)C10—C11—C12119.9 (2)
C2—C1—C8120.51 (16)C10—C11—H11120.1
N1—C2—N4117.49 (16)C12—C11—H11120.1
N1—C2—C1123.29 (17)C11—C12—C13121.0 (2)
N4—C2—C1119.19 (17)C11—C12—H12119.5
N1—C3—N2116.55 (16)C13—C12—H12119.5
N1—C3—C6123.26 (17)C12—C13—C8118.86 (19)
N2—C3—C6120.19 (17)C12—C13—C15120.24 (19)
N2—C4—N3129.19 (19)C8—C13—C15120.89 (18)
N2—C4—H4115.4C9—C14—H14A109.5
N3—C4—H4115.4C9—C14—H14B109.5
N3—C5—C6123.63 (18)H14A—C14—H14B109.5
N3—C5—H5118.2C9—C14—H14C109.5
C6—C5—H5118.2H14A—C14—H14C109.5
C5—C6—C3116.98 (18)H14B—C14—H14C109.5
C5—C6—C7125.45 (17)C13—C15—H15A109.5
C3—C6—C7117.48 (17)C13—C15—H15B109.5
C1—C7—C6120.61 (17)H15A—C15—H15B109.5
C1—C7—H7119.7C13—C15—H15C109.5
C6—C7—H7119.7H15A—C15—H15C109.5
C9—C8—C13120.61 (17)H15B—C15—H15C109.5
C9—C8—C1121.08 (17)C2—N1—C3117.76 (15)
C13—C8—C1118.31 (17)C4—N2—C3115.93 (17)
C8—C9—C10118.21 (19)C5—N3—C4114.02 (17)
C8—C9—C14121.74 (17)C2—N4—H4A120.0
C10—C9—C14120.05 (18)C2—N4—H4B120.0
C11—C10—C9121.4 (2)H4A—N4—H4B120.0
C11—C10—H10119.3
D—H···AD—HH···AD···AD—H···A
N4—H4A···N1i0.872.183.044 (2)171
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N4—H4A⋯N1i0.872.183.044 (2)171

Symmetry code: (i) .

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