Literature DB >> 21582188

rac-(2R*,3S*,5S*,6R*,7S*,8S*)-7,8-Dichloro-bicyclo-[2.2.2]octane-2,3,5,6-tetrayl tetra-acetate.

Ertan Sahin, Arif Baran, Metin Balcı.   

Abstract

The title compound, C(16)H(20)Cl(2)O(8), contains a central bicyclo-[2.2.2]octane skeleton with slightly twisted conformation. In this structure, the C-C bond lengths are in the range 1.525 (2)-1.552 (2) Å. Two sides of this skeleton have cis,cis acet-oxy substituents and the Cl atoms have a trans arrangement. An extensive network of weak C-H⋯O interactions stabilizes the crystal structure.

Entities:  

Year:  2009        PMID: 21582188      PMCID: PMC2968458          DOI: 10.1107/S160053680900484X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background information on inositol and its derivatives, see: Michell (2008 ▶); Reitz (1991 ▶); Dwek (1996 ▶); Billington et al. (1994 ▶); Varki (1993 ▶); Heightman & Vasella (1991 ▶). For background on the carba-analogues of oligosaccharides, see: Ogawa et al. (2000 ▶, 1988 ▶); Saumi (1990 ▶); Saumi & Ogawa (1990 ▶). For related structures, see: Baran et al. (2008 ▶); Mehta et al. (2007 ▶); Shih et al. (2007 ▶); Gültekin et al. (2004 ▶); Mehta & Ramesh (2001 ▶); Balcı (1997 ▶); Balcı et al. (1990 ▶);Ülkü et al. (1995 ▶); Buser & Vasella (2006 ▶).

Experimental

Crystal data

C16H20Cl2O8 M = 411.22 Monoclinic, a = 10.1061 (3) Å b = 13.3383 (4) Å c = 14.2229 (3) Å β = 90.189 (2)° V = 1917.21 (9) Å3 Z = 4 Mo Kα radiation μ = 0.38 mm−1 T = 294 K 0.5 × 0.3 × 0.2 mm

Data collection

Rigaku R-AXIS RAPID-S diffractometer Absorption correction: multi-scan (Blessing, 1995 ▶) T min = 0.873, T max = 0.927 54750 measured reflections 5628 independent reflections 5575 reflections with I > 2σ(I) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.065 wR(F 2) = 0.157 S = 1.32 5628 reflections 239 parameters H-atom parameters constrained Δρmax = 0.38 e Å−3 Δρmin = −0.38 e Å−3 Data collection: CrystalClear (Rigaku/MSC, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053680900484X/kp2205sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680900484X/kp2205Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H20Cl2O8F(000) = 856
Mr = 411.22Dx = 1.425 Mg m3
Monoclinic, P21/aMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2yabCell parameters from 16740 reflections
a = 10.1061 (3) Åθ = 2.9–30.0°
b = 13.3383 (4) ŵ = 0.38 mm1
c = 14.2229 (3) ÅT = 294 K
β = 90.189 (2)°Block, colourless
V = 1917.21 (9) Å30.5 × 0.3 × 0.2 mm
Z = 4
Rigaku R-AXIS RAPID-S diffractometer5628 independent reflections
graphite5575 reflections with I > 2σ(I)
Detector resolution: 10 pixels mm-1Rint = 0.024
dtprofit.ref scansθmax = 30.2°, θmin = 2.9°
Absorption correction: multi-scan (Blessing, 1995)h = −14→14
Tmin = 0.873, Tmax = 0.927k = −18→18
54750 measured reflectionsl = −20→20
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.065Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.157H-atom parameters constrained
S = 1.32w = 1/[σ2(Fo2) + (0.0494P)2 + 0.7822P] where P = (Fo2 + 2Fc2)/3
5628 reflections(Δ/σ)max < 0.001
239 parametersΔρmax = 0.38 e Å3
0 restraintsΔρmin = −0.38 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.43075 (15)0.68316 (10)0.83281 (11)0.0493 (3)
O20.40605 (14)0.67994 (10)0.65495 (10)0.0456 (3)
O30.65280 (15)0.43371 (11)0.67091 (11)0.0515 (4)
O40.61501 (15)0.40594 (12)0.84846 (12)0.0562 (4)
O60.7006 (2)0.27009 (13)0.68650 (16)0.0760 (6)
C10.4340 (2)0.49728 (14)0.64831 (14)0.0432 (4)
H10.43880.49420.57960.052*
O70.5083 (2)0.68542 (15)0.51586 (12)0.0707 (5)
C30.49349 (19)0.59673 (14)0.79258 (14)0.0431 (4)
H30.58570.59310.81390.052*
O50.5382 (3)0.2886 (2)0.94322 (18)0.1158 (11)
C90.7365 (2)0.35432 (17)0.67186 (17)0.0565 (5)
C50.49031 (19)0.41067 (14)0.79928 (14)0.0445 (4)
H50.43680.35180.81510.053*
C80.27942 (19)0.50853 (14)0.78399 (14)0.0436 (4)
H80.24520.57720.78680.052*
C20.48878 (19)0.59749 (13)0.68357 (14)0.0411 (4)
H20.57830.60730.65890.049*
C70.2918 (2)0.47717 (15)0.68102 (14)0.0451 (4)
H70.27610.40480.67730.054*
C60.5167 (2)0.41264 (14)0.69188 (15)0.0454 (4)
H60.49110.34830.66400.055*
C130.4288 (2)0.71914 (16)0.56923 (15)0.0492 (4)
C40.41742 (19)0.50589 (14)0.82877 (14)0.0420 (4)
H40.41030.50880.89740.050*
C140.4989 (2)0.76967 (16)0.82909 (17)0.0551 (5)
C120.7623 (3)0.3419 (3)0.9605 (2)0.0785 (8)
H12C0.76000.31591.02340.118*
H12A0.79420.40970.96170.118*
H12B0.82020.30150.92290.118*
C150.4182 (3)0.85465 (19)0.8642 (2)0.0736 (7)
H15A0.40560.84780.93070.110*
H15B0.33370.85460.83310.110*
H15C0.46300.91660.85140.110*
C100.6262 (3)0.3398 (2)0.91940 (16)0.0590 (5)
C110.8745 (3)0.3867 (2)0.6533 (2)0.0790 (8)
H11C0.91720.40330.71160.119*
H11A0.87370.44440.61300.119*
H11B0.92180.33320.62320.119*
C160.3424 (3)0.8084 (2)0.5524 (2)0.0740 (8)
H16C0.36780.84050.49480.111*
H16B0.35210.85480.60360.111*
H16A0.25180.78730.54810.111*
O80.60945 (19)0.77413 (14)0.79959 (18)0.0809 (6)
Cl20.16803 (6)0.42687 (5)0.84582 (5)0.06100 (17)
Cl10.16992 (6)0.53836 (5)0.60893 (5)0.06395 (18)
U11U22U33U12U13U23
O10.0548 (8)0.0384 (7)0.0547 (8)−0.0079 (6)0.0039 (6)−0.0063 (6)
O20.0461 (7)0.0389 (7)0.0519 (7)0.0066 (5)0.0045 (6)0.0054 (5)
O30.0473 (8)0.0395 (7)0.0676 (9)0.0078 (6)0.0118 (7)0.0062 (6)
O40.0438 (8)0.0582 (9)0.0665 (9)0.0014 (6)−0.0081 (7)0.0147 (7)
O60.0746 (12)0.0437 (9)0.1097 (16)0.0146 (8)0.0097 (11)0.0094 (9)
C10.0472 (10)0.0381 (9)0.0445 (9)0.0027 (7)0.0024 (7)0.0014 (7)
O70.0774 (12)0.0783 (12)0.0564 (10)0.0201 (10)0.0151 (9)0.0154 (9)
C30.0414 (9)0.0386 (9)0.0493 (10)−0.0036 (7)−0.0006 (7)0.0007 (7)
O50.0850 (15)0.163 (3)0.0992 (17)−0.0404 (16)−0.0287 (12)0.0788 (18)
C90.0581 (12)0.0464 (11)0.0650 (13)0.0160 (9)0.0092 (10)0.0055 (10)
C50.0413 (9)0.0396 (9)0.0527 (10)0.0002 (7)−0.0017 (8)0.0076 (8)
C80.0406 (9)0.0368 (9)0.0534 (10)−0.0030 (7)0.0038 (8)0.0028 (7)
C20.0382 (8)0.0356 (8)0.0496 (10)0.0026 (7)0.0038 (7)0.0056 (7)
C70.0446 (10)0.0382 (9)0.0525 (10)−0.0019 (7)−0.0041 (8)−0.0013 (8)
C60.0449 (10)0.0358 (9)0.0556 (11)0.0020 (7)0.0042 (8)0.0014 (8)
C130.0514 (11)0.0437 (10)0.0525 (11)0.0014 (8)−0.0026 (9)0.0080 (8)
C40.0425 (9)0.0396 (9)0.0439 (9)−0.0033 (7)0.0010 (7)0.0031 (7)
C140.0606 (13)0.0411 (10)0.0636 (13)−0.0115 (9)−0.0101 (10)0.0013 (9)
C120.0621 (15)0.104 (2)0.0691 (16)0.0164 (15)−0.0158 (13)0.0076 (15)
C150.092 (2)0.0414 (12)0.0874 (19)−0.0048 (12)−0.0021 (15)−0.0067 (12)
C100.0579 (13)0.0691 (14)0.0500 (11)0.0075 (11)−0.0047 (10)0.0066 (10)
C110.0552 (14)0.0768 (18)0.105 (2)0.0165 (13)0.0163 (14)0.0124 (16)
C160.0815 (18)0.0573 (14)0.0833 (18)0.0202 (13)−0.0038 (14)0.0190 (13)
O80.0582 (11)0.0543 (10)0.1301 (18)−0.0180 (8)0.0015 (11)0.0029 (11)
Cl20.0510 (3)0.0560 (3)0.0761 (4)−0.0096 (2)0.0142 (3)0.0077 (3)
Cl10.0534 (3)0.0690 (4)0.0694 (4)0.0004 (3)−0.0176 (3)0.0018 (3)
O1—C141.345 (2)C8—Cl21.7982 (19)
O1—C31.436 (2)C8—H80.9800
O2—C131.347 (2)C2—H20.9800
O2—C21.439 (2)C7—Cl11.796 (2)
O3—C91.355 (2)C7—H70.9800
O3—C61.436 (2)C6—H60.9800
O4—C101.345 (3)C13—C161.495 (3)
O4—C51.441 (2)C4—H40.9800
O6—C91.199 (3)C14—O81.197 (3)
C1—C21.531 (3)C14—C151.484 (4)
C1—C61.534 (3)C12—C101.493 (4)
C1—C71.536 (3)C12—H12C0.9600
C1—H10.9800C12—H12A0.9600
O7—C131.195 (3)C12—H12B0.9600
C3—C41.525 (3)C15—H15A0.9600
C3—C21.551 (3)C15—H15B0.9600
C3—H30.9800C15—H15C0.9600
O5—C101.173 (3)C11—H11C0.9600
C9—C111.484 (4)C11—H11A0.9600
C5—C41.528 (3)C11—H11B0.9600
C5—C61.552 (3)C16—H16C0.9600
C5—H50.9800C16—H16B0.9600
C8—C71.529 (3)C16—H16A0.9600
C8—C41.532 (3)
C14—O1—C3116.52 (17)O3—C6—C5112.04 (17)
C13—O2—C2116.86 (15)C1—C6—C5108.37 (16)
C9—O3—C6116.31 (17)O3—C6—H6109.8
C10—O4—C5117.68 (18)C1—C6—H6109.8
C2—C1—C6108.32 (16)C5—C6—H6109.8
C2—C1—C7113.02 (16)O7—C13—O2123.09 (19)
C6—C1—C7104.95 (16)O7—C13—C16126.3 (2)
C2—C1—H1110.1O2—C13—C16110.6 (2)
C6—C1—H1110.1C3—C4—C5108.89 (16)
C7—C1—H1110.1C3—C4—C8107.50 (15)
O1—C3—C4106.24 (15)C5—C4—C8110.13 (16)
O1—C3—C2112.40 (15)C3—C4—H4110.1
C4—C3—C2109.19 (15)C5—C4—H4110.1
O1—C3—H3109.6C8—C4—H4110.1
C4—C3—H3109.6O8—C14—O1122.4 (2)
C2—C3—H3109.6O8—C14—C15126.5 (2)
O6—C9—O3123.0 (2)O1—C14—C15111.1 (2)
O6—C9—C11126.0 (2)C10—C12—H12C109.5
O3—C9—C11111.0 (2)C10—C12—H12A109.5
O4—C5—C4108.96 (17)H12C—C12—H12A109.5
O4—C5—C6109.03 (16)C10—C12—H12B109.5
C4—C5—C6109.92 (15)H12C—C12—H12B109.5
O4—C5—H5109.6H12A—C12—H12B109.5
C4—C5—H5109.6C14—C15—H15A109.5
C6—C5—H5109.6C14—C15—H15B109.5
C7—C8—C4108.35 (16)H15A—C15—H15B109.5
C7—C8—Cl2110.86 (13)C14—C15—H15C109.5
C4—C8—Cl2110.69 (13)H15A—C15—H15C109.5
C7—C8—H8109.0H15B—C15—H15C109.5
C4—C8—H8109.0O5—C10—O4122.5 (2)
Cl2—C8—H8109.0O5—C10—C12126.6 (3)
O2—C2—C1111.44 (16)O4—C10—C12110.9 (2)
O2—C2—C3107.67 (15)C9—C11—H11C109.5
C1—C2—C3109.37 (15)C9—C11—H11A109.5
O2—C2—H2109.4H11C—C11—H11A109.5
C1—C2—H2109.4C9—C11—H11B109.5
C3—C2—H2109.4H11C—C11—H11B109.5
C8—C7—C1108.79 (16)H11A—C11—H11B109.5
C8—C7—Cl1111.38 (14)C13—C16—H16C109.5
C1—C7—Cl1112.85 (14)C13—C16—H16B109.5
C8—C7—H7107.9H16C—C16—H16B109.5
C1—C7—H7107.9C13—C16—H16A109.5
Cl1—C7—H7107.9H16C—C16—H16A109.5
O3—C6—C1107.03 (15)H16B—C16—H16A109.5
C14—O1—C3—C4164.71 (17)C2—C1—C6—O3−53.5 (2)
C14—O1—C3—C2−75.9 (2)C7—C1—C6—O3−174.44 (16)
C6—O3—C9—O62.1 (4)C2—C1—C6—C567.6 (2)
C6—O3—C9—C11−177.5 (2)C7—C1—C6—C5−53.4 (2)
C10—O4—C5—C4105.8 (2)O4—C5—C6—O3−14.1 (2)
C10—O4—C5—C6−134.2 (2)C4—C5—C6—O3105.27 (18)
C13—O2—C2—C1−85.8 (2)O4—C5—C6—C1−131.97 (17)
C13—O2—C2—C3154.22 (17)C4—C5—C6—C1−12.6 (2)
C6—C1—C2—O2−172.81 (15)C2—O2—C13—O73.9 (3)
C7—C1—C2—O2−57.0 (2)C2—O2—C13—C16−175.8 (2)
C6—C1—C2—C3−53.9 (2)O1—C3—C4—C5−172.47 (15)
C7—C1—C2—C362.0 (2)C2—C3—C4—C566.09 (19)
O1—C3—C2—O2−7.5 (2)O1—C3—C4—C868.23 (19)
C4—C3—C2—O2110.12 (17)C2—C3—C4—C8−53.2 (2)
O1—C3—C2—C1−128.73 (16)O4—C5—C4—C367.1 (2)
C4—C3—C2—C1−11.1 (2)C6—C5—C4—C3−52.3 (2)
C4—C8—C7—C1−23.6 (2)O4—C5—C4—C8−175.22 (15)
Cl2—C8—C7—C1−145.30 (14)C6—C5—C4—C865.4 (2)
C4—C8—C7—Cl1−148.64 (13)C7—C8—C4—C374.40 (19)
Cl2—C8—C7—Cl189.70 (15)Cl2—C8—C4—C3−163.84 (13)
C2—C1—C7—C8−41.9 (2)C7—C8—C4—C5−44.1 (2)
C6—C1—C7—C875.91 (19)Cl2—C8—C4—C577.66 (18)
C2—C1—C7—Cl182.20 (18)C3—O1—C14—O8−4.8 (3)
C6—C1—C7—Cl1−159.95 (14)C3—O1—C14—C15174.3 (2)
C9—O3—C6—C1−156.87 (19)C5—O4—C10—O5−1.7 (4)
C9—O3—C6—C584.5 (2)C5—O4—C10—C12178.0 (2)
D—H···AD—HH···AD···AD—H···A
C7—H7···O6i0.982.463.425 (3)169
C8—H8···O8ii0.982.423.377 (3)166
C16—H16A···O7ii0.962.533.416 (4)154
C12—H12B···O5iii0.962.523.297 (4)137
C6—H6···O7iv0.982.603.240 (3)123
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C7—H7⋯O6i0.982.463.425 (3)169
C8—H8⋯O8ii0.982.423.377 (3)166
C16—H16A⋯O7ii0.962.533.416 (4)154
C12—H12B⋯O5iii0.962.523.297 (4)137
C6—H6⋯O7iv0.982.603.240 (3)123

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  8 in total

1.  Glycobiology: Toward Understanding the Function of Sugars.

Authors:  Raymond A. Dwek
Journal:  Chem Rev       Date:  1996-03-28       Impact factor: 60.622

Review 2.  Chemistry of carba-sugars (pseudo-sugars) and their derivatives.

Authors:  T Suami; S Ogawa
Journal:  Adv Carbohydr Chem Biochem       Date:  1990       Impact factor: 12.200

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  An empirical correction for absorption anisotropy.

Authors:  R H Blessing
Journal:  Acta Crystallogr A       Date:  1995-01-01       Impact factor: 2.290

5.  Expeditious synthesis of tri- and tetrahydroxyazepanes from D-(-)-quinic acid as potent glycosidase inhibitors.

Authors:  Tzenge-Lien Shih; Ru-Ying Yang; Shiou-Ting Li; Cheng-Fan Chiang; Chun-Hung Lin
Journal:  J Org Chem       Date:  2007-05-05       Impact factor: 4.354

Review 6.  Inositol derivatives: evolution and functions.

Authors:  Robert H Michell
Journal:  Nat Rev Mol Cell Biol       Date:  2008-02       Impact factor: 94.444

7.  Synthesis of bicyclo[2.2.2]octane-2,3,5,6,7,8 hexols (Bishomoinositols) as glycosidase inhibitors.

Authors:  Arif Baran; Aslihan Günel; Metin Balci
Journal:  J Org Chem       Date:  2008-05-20       Impact factor: 4.354

Review 8.  Biological roles of oligosaccharides: all of the theories are correct.

Authors:  A Varki
Journal:  Glycobiology       Date:  1993-04       Impact factor: 4.313

  8 in total

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