| Literature DB >> 21582187 |
Guangfu Song1, Fang Xue, Dongliang Li.
Abstract
In the crystal structure of the title compound, C(8)H(14)N(2)O, inter-molecular O-H⋯N hydrogen bonds link mol-ecules related by translation along the a axis into chains. Weak inter-molecular C-H⋯O hydrogen bonds and C-H⋯π inter-actions enhance the crystal packing stability.Entities:
Year: 2009 PMID: 21582187 PMCID: PMC2968557 DOI: 10.1107/S1600536809004565
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C8H14N2O | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yn | Cell parameters from 21 reflections |
| θ = 4.6–7.4° | |
| µ = 0.08 mm−1 | |
| β = 90.54 (3)° | Block, colourless |
| 0.58 × 0.54 × 0.42 mm | |
| Enraf–Nonius CAD-4 diffractometer | |
| Radiation source: fine-focus sealed tube | θmax = 25.5°, θmin = 2.5° |
| graphite | |
| ω/2θ scans | |
| 1931 measured reflections | |
| 1630 independent reflections | 3 standard reflections every 120 reflections |
| 965 reflections with | intensity decay: 0.3% |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max < 0.001 | |
| 1630 reflections | Δρmax = 0.31 e Å−3 |
| 104 parameters | Δρmin = −0.24 e Å−3 |
| 0 restraints | Extinction correction: |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.046 (11) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 0.4065 (2) | 0.1870 (3) | 0.31165 (14) | 0.0557 (7) | |
| H1 | 0.3011 | 0.1697 | 0.3255 | 0.084* | |
| N1 | 0.7629 (3) | 0.0340 (3) | 0.34211 (14) | 0.0459 (7) | |
| N2 | 1.0479 (3) | 0.1263 (4) | 0.34916 (16) | 0.0598 (8) | |
| C4 | 0.6043 (3) | −0.0816 (4) | 0.32307 (17) | 0.0456 (8) | |
| H4 | 0.6473 | −0.1848 | 0.2898 | 0.055* | |
| C5 | 0.4713 (4) | 0.0284 (4) | 0.27157 (18) | 0.0480 (8) | |
| H5A | 0.5306 | 0.0660 | 0.2221 | 0.058* | |
| H5B | 0.3692 | −0.0503 | 0.2570 | 0.058* | |
| C1 | 0.9353 (4) | 0.0047 (4) | 0.31778 (19) | 0.0514 (8) | |
| H1A | 0.9698 | −0.0901 | 0.2830 | 0.062* | |
| C3 | 0.7676 (4) | 0.1855 (4) | 0.39170 (18) | 0.0559 (8) | |
| H3 | 0.6696 | 0.2406 | 0.4174 | 0.067* | |
| C6 | 0.5261 (4) | −0.1657 (4) | 0.39954 (16) | 0.0487 (8) | |
| H6 | 0.4769 | −0.0643 | 0.4322 | 0.058* | |
| C2 | 0.9438 (4) | 0.2392 (4) | 0.3958 (2) | 0.0597 (9) | |
| H2 | 0.9875 | 0.3387 | 0.4260 | 0.072* | |
| C7 | 0.3712 (5) | −0.2990 (5) | 0.3805 (2) | 0.0693 (10) | |
| H7A | 0.4164 | −0.4013 | 0.3495 | 0.104* | |
| H7B | 0.2786 | −0.2355 | 0.3500 | 0.104* | |
| H7C | 0.3208 | −0.3444 | 0.4300 | 0.104* | |
| C8 | 0.6711 (5) | −0.2629 (5) | 0.4495 (2) | 0.0761 (11) | |
| H8A | 0.6199 | −0.3035 | 0.4996 | 0.114* | |
| H8B | 0.7693 | −0.1786 | 0.4602 | 0.114* | |
| H8C | 0.7157 | −0.3681 | 0.4202 | 0.114* |
| O1 | 0.0302 (11) | 0.0505 (12) | 0.0864 (15) | 0.0012 (9) | −0.0025 (10) | −0.0011 (11) |
| N1 | 0.0288 (13) | 0.0493 (13) | 0.0595 (15) | 0.0029 (11) | −0.0026 (10) | −0.0055 (11) |
| N2 | 0.0307 (14) | 0.0628 (16) | 0.086 (2) | −0.0005 (12) | −0.0039 (13) | −0.0031 (14) |
| C4 | 0.0325 (15) | 0.0424 (15) | 0.0617 (18) | −0.0002 (12) | −0.0060 (13) | −0.0027 (14) |
| C5 | 0.0355 (16) | 0.0499 (16) | 0.0586 (17) | −0.0024 (13) | −0.0038 (13) | −0.0008 (14) |
| C1 | 0.0334 (16) | 0.0518 (17) | 0.069 (2) | 0.0086 (14) | 0.0035 (14) | −0.0014 (14) |
| C3 | 0.0353 (16) | 0.0655 (19) | 0.0669 (19) | 0.0006 (15) | −0.0020 (14) | −0.0129 (16) |
| C6 | 0.0407 (16) | 0.0520 (17) | 0.0532 (17) | 0.0002 (14) | −0.0043 (13) | 0.0040 (14) |
| C2 | 0.0405 (17) | 0.0628 (19) | 0.075 (2) | −0.0027 (15) | −0.0125 (15) | −0.0133 (16) |
| C7 | 0.066 (2) | 0.071 (2) | 0.071 (2) | −0.0228 (19) | 0.0010 (17) | 0.0087 (18) |
| C8 | 0.063 (2) | 0.085 (2) | 0.081 (2) | 0.0034 (19) | −0.0120 (19) | 0.025 (2) |
| O1—C5 | 1.408 (3) | C3—C2 | 1.354 (4) |
| O1—H1 | 0.8200 | C3—H3 | 0.9300 |
| N1—C1 | 1.351 (4) | C6—C8 | 1.515 (4) |
| N1—C3 | 1.367 (3) | C6—C7 | 1.522 (4) |
| N1—C4 | 1.466 (3) | C6—H6 | 0.9800 |
| N2—C1 | 1.310 (3) | C2—H2 | 0.9300 |
| N2—C2 | 1.362 (4) | C7—H7A | 0.9600 |
| C4—C5 | 1.516 (3) | C7—H7B | 0.9600 |
| C4—C6 | 1.521 (4) | C7—H7C | 0.9600 |
| C4—H4 | 0.9800 | C8—H8A | 0.9600 |
| C5—H5A | 0.9700 | C8—H8B | 0.9600 |
| C5—H5B | 0.9700 | C8—H8C | 0.9600 |
| C1—H1A | 0.9300 | ||
| C5—O1—H1 | 109.5 | N1—C3—H3 | 126.9 |
| C1—N1—C3 | 106.6 (2) | C8—C6—C4 | 111.6 (2) |
| C1—N1—C4 | 126.5 (2) | C8—C6—C7 | 110.0 (3) |
| C3—N1—C4 | 126.8 (2) | C4—C6—C7 | 111.6 (2) |
| C1—N2—C2 | 105.6 (2) | C8—C6—H6 | 107.8 |
| N1—C4—C5 | 109.4 (2) | C4—C6—H6 | 107.8 |
| N1—C4—C6 | 110.8 (2) | C7—C6—H6 | 107.8 |
| C5—C4—C6 | 115.4 (2) | C3—C2—N2 | 110.1 (3) |
| N1—C4—H4 | 107.0 | C3—C2—H2 | 125.0 |
| C5—C4—H4 | 107.0 | N2—C2—H2 | 125.0 |
| C6—C4—H4 | 107.0 | C6—C7—H7A | 109.5 |
| O1—C5—C4 | 112.3 (2) | C6—C7—H7B | 109.5 |
| O1—C5—H5A | 109.1 | H7A—C7—H7B | 109.5 |
| C4—C5—H5A | 109.1 | C6—C7—H7C | 109.5 |
| O1—C5—H5B | 109.1 | H7A—C7—H7C | 109.5 |
| C4—C5—H5B | 109.1 | H7B—C7—H7C | 109.5 |
| H5A—C5—H5B | 107.9 | C6—C8—H8A | 109.5 |
| N2—C1—N1 | 111.6 (3) | C6—C8—H8B | 109.5 |
| N2—C1—H1A | 124.2 | H8A—C8—H8B | 109.5 |
| N1—C1—H1A | 124.2 | C6—C8—H8C | 109.5 |
| C2—C3—N1 | 106.1 (3) | H8A—C8—H8C | 109.5 |
| C2—C3—H3 | 126.9 | H8B—C8—H8C | 109.5 |
| C1—N1—C4—C5 | −115.0 (3) | C1—N1—C3—C2 | −0.8 (3) |
| C3—N1—C4—C5 | 69.3 (3) | C4—N1—C3—C2 | 175.7 (2) |
| C1—N1—C4—C6 | 116.8 (3) | N1—C4—C6—C8 | −51.7 (3) |
| C3—N1—C4—C6 | −59.0 (3) | C5—C4—C6—C8 | −176.6 (2) |
| N1—C4—C5—O1 | −61.5 (3) | N1—C4—C6—C7 | −175.2 (2) |
| C6—C4—C5—O1 | 64.2 (3) | C5—C4—C6—C7 | 59.9 (3) |
| C2—N2—C1—N1 | 0.0 (3) | N1—C3—C2—N2 | 0.8 (4) |
| C3—N1—C1—N2 | 0.5 (3) | C1—N2—C2—C3 | −0.5 (4) |
| C4—N1—C1—N2 | −175.9 (2) |
| H··· | ||||
| O1—H1···N2i | 0.82 | 1.93 | 2.751 (3) | 176 |
| C1—H1A···O1ii | 0.93 | 2.43 | 3.353 (4) | 173 |
| C4—H4···Cgii | 0.98 | 2.86 | 3.716 (4) | 146 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O1—H1⋯N2i | 0.82 | 1.93 | 2.751 (3) | 176 |
| C1—H1 | 0.93 | 2.43 | 3.353 (4) | 173 |
| C4—H4⋯ | 0.98 | 2.86 | 3.716 (4) | 146 |
Symmetry codes: (i) ; (ii) . Cg is the centroid of the C1–C3/N1/N2 ring.