Literature DB >> 21582175

4-Chloro-2-[(E)-(2-chloro-phen-yl)imino-meth-yl]phenol.

Xinli Zhang1.   

Abstract

The title compound, C(13)H(9)Cl(2)NO, was crystallized from a methanol solution of 5-chloro-salicylaldehyde and o-chloro-aniline. The mol-ecule displays a trans configuration with respect to the imine C=N double bond. The N atom is involved in an intra-molecular O-H⋯N hydrogen bond. The two aromatic rings are essentially coplanar, the dihedral angle between them being 7.1 (1)°. A C-H⋯π inter-action is present in the crystal.

Entities:  

Year:  2009        PMID: 21582175      PMCID: PMC2968492          DOI: 10.1107/S1600536809003924

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological properties of Schiff bases containing O and N atoms, see: Antony et al. (1999 ▶); Lumme & Elo (1984 ▶); Yao et al. (1999 ▶). For its chemical behaviour, see: Ueno et al. (2006 ▶).

Experimental

Crystal data

C13H9Cl2NO M = 266.11 Orthorhombic, a = 7.2693 (13) Å b = 13.0037 (19) Å c = 25.2711 (16) Å V = 2388.8 (6) Å3 Z = 8 Mo Kα radiation μ = 0.52 mm−1 T = 298 (2) K 0.50 × 0.48 × 0.47 mm

Data collection

Siemens SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Siemens, 1996 ▶) T min = 0.780, T max = 0.791 11102 measured reflections 2103 independent reflections 1496 reflections with I > 2σ(I) R int = 0.041

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.099 S = 1.08 2103 reflections 155 parameters H-atom parameters constrained Δρmax = 0.20 e Å−3 Δρmin = −0.22 e Å−3 Data collection: SMART (Siemens, 1996 ▶); cell refinement: SAINT (Siemens, 1996 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809003924/bq2118sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809003924/bq2118Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H9Cl2NOF(000) = 1088
Mr = 266.11Dx = 1.480 Mg m3
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 3178 reflections
a = 7.2693 (13) Åθ = 2.9–26.3°
b = 13.0037 (19) ŵ = 0.52 mm1
c = 25.2711 (16) ÅT = 298 K
V = 2388.8 (6) Å3Block, yellow
Z = 80.50 × 0.48 × 0.47 mm
Siemens SMART CCD area-detector diffractometer2103 independent reflections
Radiation source: fine-focus sealed tube1496 reflections with I > 2σ(I)
graphiteRint = 0.041
φ and ω scansθmax = 25.0°, θmin = 1.6°
Absorption correction: multi-scan (SADABS; Siemens, 1996)h = −8→8
Tmin = 0.780, Tmax = 0.791k = −15→11
11102 measured reflectionsl = −30→29
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.037H-atom parameters constrained
wR(F2) = 0.099w = 1/[σ2(Fo2) + (0.0287P)2 + 1.7853P] where P = (Fo2 + 2Fc2)/3
S = 1.08(Δ/σ)max = 0.001
2103 reflectionsΔρmax = 0.20 e Å3
155 parametersΔρmin = −0.22 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0069 (6)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.07629 (12)1.13163 (6)1.12839 (3)0.0653 (3)
Cl20.41980 (14)0.79479 (6)0.83555 (3)0.0760 (3)
N10.3625 (3)0.96742 (15)0.90783 (8)0.0407 (5)
O10.2932 (4)0.81908 (14)0.97404 (8)0.0734 (7)
H10.32520.84570.94610.110*
C10.3120 (3)1.03135 (19)0.94334 (9)0.0396 (6)
H1A0.31321.10130.93570.048*
C20.2530 (3)0.99774 (18)0.99498 (9)0.0366 (6)
C30.2445 (4)0.89294 (19)1.00872 (10)0.0482 (7)
C40.1860 (4)0.8649 (2)1.05868 (11)0.0591 (8)
H40.18060.79561.06770.071*
C50.1357 (4)0.9376 (2)1.09521 (11)0.0519 (7)
H50.09720.91781.12880.062*
C60.1427 (4)1.04066 (19)1.08177 (10)0.0432 (6)
C70.1990 (4)1.07049 (19)1.03254 (10)0.0422 (6)
H70.20141.14001.02390.051*
C80.4229 (3)0.99867 (19)0.85743 (9)0.0393 (6)
C90.4587 (4)0.9228 (2)0.82003 (11)0.0462 (7)
C100.5255 (4)0.9469 (2)0.77026 (11)0.0588 (8)
H100.54870.89490.74590.071*
C110.5574 (4)1.0476 (3)0.75699 (12)0.0627 (8)
H110.60261.06410.72360.075*
C120.5224 (5)1.1235 (2)0.79298 (12)0.0635 (9)
H120.54391.19180.78390.076*
C130.4556 (4)1.1001 (2)0.84244 (11)0.0544 (7)
H130.43191.15290.86630.065*
U11U22U33U12U13U23
Cl10.0859 (6)0.0587 (5)0.0515 (4)0.0011 (4)0.0102 (4)−0.0135 (4)
Cl20.1089 (8)0.0424 (4)0.0766 (6)−0.0022 (4)0.0226 (5)−0.0113 (4)
N10.0478 (13)0.0375 (12)0.0367 (11)−0.0015 (10)−0.0029 (10)−0.0003 (10)
O10.128 (2)0.0355 (10)0.0562 (12)0.0156 (12)0.0259 (13)0.0034 (9)
C10.0434 (15)0.0330 (13)0.0424 (14)−0.0013 (11)−0.0043 (12)0.0023 (12)
C20.0385 (13)0.0335 (12)0.0377 (13)−0.0001 (10)−0.0036 (12)0.0011 (11)
C30.0614 (18)0.0379 (14)0.0452 (15)0.0094 (13)0.0001 (14)0.0028 (12)
C40.088 (2)0.0384 (15)0.0512 (16)0.0129 (15)0.0078 (16)0.0119 (14)
C50.0633 (19)0.0532 (17)0.0391 (14)0.0078 (14)0.0032 (14)0.0097 (13)
C60.0467 (16)0.0428 (15)0.0402 (14)0.0026 (12)−0.0029 (12)−0.0038 (12)
C70.0481 (16)0.0343 (13)0.0443 (15)−0.0037 (11)−0.0030 (12)−0.0001 (11)
C80.0390 (14)0.0436 (14)0.0353 (13)−0.0006 (12)−0.0059 (11)0.0024 (11)
C90.0472 (17)0.0435 (15)0.0479 (15)0.0012 (12)−0.0004 (13)−0.0024 (12)
C100.060 (2)0.068 (2)0.0478 (16)0.0039 (16)0.0083 (15)−0.0077 (15)
C110.063 (2)0.080 (2)0.0456 (16)−0.0032 (17)0.0071 (15)0.0107 (17)
C120.082 (2)0.0572 (18)0.0518 (17)−0.0089 (17)0.0014 (16)0.0151 (15)
C130.073 (2)0.0429 (15)0.0475 (16)−0.0042 (14)−0.0005 (15)0.0022 (13)
Cl1—C61.738 (3)C5—H50.9300
Cl2—C91.733 (3)C6—C71.366 (3)
N1—C11.277 (3)C7—H70.9300
N1—C81.407 (3)C8—C91.391 (4)
O1—C31.347 (3)C8—C131.393 (4)
O1—H10.8200C9—C101.384 (4)
C1—C21.441 (3)C10—C111.371 (4)
C1—H1A0.9300C10—H100.9300
C2—C71.397 (3)C11—C121.367 (4)
C2—C31.408 (3)C11—H110.9300
C3—C41.381 (4)C12—C131.375 (4)
C4—C51.371 (4)C12—H120.9300
C4—H40.9300C13—H130.9300
C5—C61.383 (4)
C1—N1—C8122.5 (2)C6—C7—H7119.6
C3—O1—H1109.5C2—C7—H7119.6
N1—C1—C2121.6 (2)C9—C8—C13117.1 (2)
N1—C1—H1A119.2C9—C8—N1117.9 (2)
C2—C1—H1A119.2C13—C8—N1124.9 (2)
C7—C2—C3118.4 (2)C10—C9—C8121.5 (3)
C7—C2—C1119.6 (2)C10—C9—Cl2118.7 (2)
C3—C2—C1122.0 (2)C8—C9—Cl2119.8 (2)
O1—C3—C4119.2 (2)C11—C10—C9119.9 (3)
O1—C3—C2121.2 (2)C11—C10—H10120.1
C4—C3—C2119.6 (2)C9—C10—H10120.1
C5—C4—C3121.0 (3)C12—C11—C10119.7 (3)
C5—C4—H4119.5C12—C11—H11120.1
C3—C4—H4119.5C10—C11—H11120.1
C4—C5—C6119.5 (3)C11—C12—C13120.7 (3)
C4—C5—H5120.2C11—C12—H12119.6
C6—C5—H5120.2C13—C12—H12119.6
C7—C6—C5120.6 (2)C12—C13—C8121.2 (3)
C7—C6—Cl1120.5 (2)C12—C13—H13119.4
C5—C6—Cl1118.9 (2)C8—C13—H13119.4
C6—C7—C2120.7 (2)
C8—N1—C1—C2−179.1 (2)C1—C2—C7—C6−179.9 (2)
N1—C1—C2—C7180.0 (2)C1—N1—C8—C9−174.2 (2)
N1—C1—C2—C3−1.2 (4)C1—N1—C8—C138.1 (4)
C7—C2—C3—O1179.4 (3)C13—C8—C9—C100.6 (4)
C1—C2—C3—O10.6 (4)N1—C8—C9—C10−177.4 (3)
C7—C2—C3—C4−0.8 (4)C13—C8—C9—Cl2−179.5 (2)
C1—C2—C3—C4−179.6 (3)N1—C8—C9—Cl22.5 (3)
O1—C3—C4—C5179.8 (3)C8—C9—C10—C11−0.1 (4)
C2—C3—C4—C50.1 (5)Cl2—C9—C10—C11180.0 (2)
C3—C4—C5—C60.3 (5)C9—C10—C11—C12−0.2 (5)
C4—C5—C6—C70.1 (4)C10—C11—C12—C130.1 (5)
C4—C5—C6—Cl1179.4 (2)C11—C12—C13—C80.4 (5)
C5—C6—C7—C2−0.9 (4)C9—C8—C13—C12−0.7 (4)
Cl1—C6—C7—C2179.8 (2)N1—C8—C13—C12177.1 (3)
C3—C2—C7—C61.2 (4)
D—H···AD—HH···AD···AD—H···A
O1—H1···N10.821.872.603 (3)147
C11—H11···Cg1i0.932.973.549 (3)122
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯N10.821.872.603 (3)147
C11—H11⋯Cg1i0.932.973.549 (3)122

Symmetry code: (i) . Cg1 is the centroid of C8–C13 phenyl ring.

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Design of metal cofactors activated by a protein-protein electron transfer system.

Authors:  Takafumi Ueno; Norihiko Yokoi; Masaki Unno; Toshitaka Matsui; Yuichi Tokita; Masako Yamada; Masao Ikeda-Saito; Hiroshi Nakajima; Yoshihito Watanabe
Journal:  Proc Natl Acad Sci U S A       Date:  2006-06-12       Impact factor: 11.205

  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.