| Literature DB >> 21582156 |
Ju-Hua Peng, Wen-Juan Hao, Shu-Jiang Tu.
Abstract
In the mol-ecule of the title compound, C(21)H(20)BrN(3)O(3), the pyrimidine ring is oriented at dihedral angles of 80.87 (3) and 15.99 (3)°, respectively, to the pyrimidine and bromo-phenyl rings. The dihedral angle between the two benzene rings is 88.37 (3)°. In the crystal structure, inter-molecular N-H⋯O and O-H⋯N hydrogen bonds link the mol-ecules. A π-π contact between pyrimidine and phenyl rings [centroid-centroid distance = 3.776 (3) Å] may further stabilize the structure. The methine H and the methyl C and H atoms are disordered over two positions and were refined with occupancies of 0.522 (13) and 0.478 (13).Entities:
Year: 2009 PMID: 21582156 PMCID: PMC2968538 DOI: 10.1107/S1600536809003821
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C21H20BrN3O3 | |
| Triclinic, | |
| Hall symbol: -P 1 | Melting point = 551–553 K |
| Mo | |
| Cell parameters from 1260 reflections | |
| θ = 3.1–25.2° | |
| α = 118.506 (2)° | µ = 2.07 mm−1 |
| β = 99.047 (1)° | |
| γ = 93.074 (1)° | Block, colorless |
| 0.20 × 0.18 × 0.17 mm |
| Bruker SMART CCD area-detector diffractometer | 3498 independent reflections |
| Radiation source: fine-focus sealed tube | 1810 reflections with |
| graphite | |
| φ and ω scans | θmax = 25.0°, θmin = 1.8° |
| Absorption correction: multi-scan ( | |
| 5285 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 3498 reflections | (Δ/σ)max = 0.001 |
| 265 parameters | Δρmax = 0.38 e Å−3 |
| 0 restraints | Δρmin = −0.43 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Occ. (<1) | |||||
| Br1 | 0.19659 (12) | −0.19766 (6) | 0.27241 (8) | 0.1005 (4) | |
| O1 | 0.5807 (5) | 0.4123 (3) | 0.5600 (3) | 0.0571 (10) | |
| O2 | 0.3046 (5) | 0.4229 (4) | 0.8648 (3) | 0.0636 (11) | |
| H2 | 0.3406 | 0.4455 | 0.9356 | 0.095* | |
| O3 | 0.0791 (5) | 0.5971 (3) | 0.7386 (3) | 0.0556 (10) | |
| N1 | 0.7505 (6) | 0.4888 (4) | 0.7474 (4) | 0.0428 (11) | |
| H1 | 0.8512 | 0.5063 | 0.7267 | 0.051* | |
| N2 | 0.6202 (6) | 0.4935 (4) | 0.9004 (4) | 0.0478 (11) | |
| N3 | 0.3055 (6) | 0.6437 (4) | 0.6606 (4) | 0.0475 (11) | |
| H3 | 0.3644 | 0.6160 | 0.6026 | 0.057* | |
| C1 | 0.5815 (7) | 0.4342 (4) | 0.6618 (5) | 0.0408 (12) | |
| C2 | 0.4203 (7) | 0.4109 (4) | 0.7041 (4) | 0.0394 (12) | |
| C3 | 0.4498 (7) | 0.4424 (5) | 0.8225 (4) | 0.0417 (13) | |
| C4 | 0.7634 (7) | 0.5149 (5) | 0.8586 (5) | 0.0450 (13) | |
| H4 | 0.8816 | 0.5508 | 0.9104 | 0.054* | |
| C5 | 0.1767 (7) | 0.5650 (5) | 0.6613 (4) | 0.0420 (13) | |
| C6 | 0.1587 (8) | 0.4333 (4) | 0.5658 (4) | 0.0445 (13) | |
| H6A | 0.2353 | 0.4275 | 0.5088 | 0.053* | |
| H6B | 0.0262 | 0.4026 | 0.5241 | 0.053* | |
| C7 | 0.2281 (7) | 0.3561 (4) | 0.6225 (4) | 0.0429 (13) | |
| H7 | 0.1378 | 0.3585 | 0.6725 | 0.051* | |
| C8 | 0.2223 (7) | 0.2209 (5) | 0.5337 (5) | 0.0457 (13) | |
| C9 | 0.2544 (10) | 0.1396 (5) | 0.5734 (6) | 0.0734 (19) | |
| H9 | 0.2786 | 0.1682 | 0.6548 | 0.088* | |
| C10 | 0.2523 (11) | 0.0158 (6) | 0.4969 (7) | 0.084 (2) | |
| H10 | 0.2783 | −0.0369 | 0.5271 | 0.101* | |
| C11 | 0.2120 (9) | −0.0288 (5) | 0.3769 (6) | 0.0642 (17) | |
| C12 | 0.1737 (11) | 0.0496 (6) | 0.3352 (6) | 0.088 (2) | |
| H12 | 0.1444 | 0.0200 | 0.2537 | 0.105* | |
| C13 | 0.1777 (11) | 0.1740 (5) | 0.4129 (5) | 0.079 (2) | |
| H13 | 0.1496 | 0.2263 | 0.3826 | 0.094* | |
| C14 | 0.3576 (10) | 0.7744 (6) | 0.7498 (6) | 0.0682 (17) | |
| H14 | 0.2380 | 0.7946 | 0.7776 | 0.082* | 0.522 (13) |
| H14' | 0.4428 | 0.8049 | 0.7146 | 0.082* | 0.478 (13) |
| C15 | 0.4908 (10) | 0.7923 (5) | 0.8600 (6) | 0.0644 (17) | |
| C16 | 0.4207 (11) | 0.7902 (7) | 0.9509 (7) | 0.085 (2) | |
| H16 | 0.2890 | 0.7782 | 0.9449 | 0.102* | |
| C17 | 0.5439 (14) | 0.8058 (7) | 1.0516 (7) | 0.099 (2) | |
| H17 | 0.4949 | 0.8039 | 1.1125 | 0.119* | |
| C18 | 0.7363 (16) | 0.8239 (7) | 1.0612 (8) | 0.105 (3) | |
| H18 | 0.8182 | 0.8344 | 1.1289 | 0.126* | |
| C19 | 0.8110 (12) | 0.8270 (7) | 0.9733 (10) | 0.108 (3) | |
| H19 | 0.9430 | 0.8394 | 0.9804 | 0.129* | |
| C20 | 0.6863 (11) | 0.8114 (7) | 0.8724 (8) | 0.090 (2) | |
| H20 | 0.7365 | 0.8138 | 0.8121 | 0.108* | |
| C21 | 0.3839 (18) | 0.8563 (10) | 0.6965 (11) | 0.072 (5) | 0.522 (13) |
| H21A | 0.2689 | 0.8443 | 0.6410 | 0.108* | 0.522 (13) |
| H21B | 0.4888 | 0.8360 | 0.6562 | 0.108* | 0.522 (13) |
| H21C | 0.4108 | 0.9408 | 0.7585 | 0.108* | 0.522 (13) |
| C21' | 0.211 (2) | 0.8496 (13) | 0.7670 (15) | 0.096 (7) | 0.478 (13) |
| H21D | 0.1534 | 0.8433 | 0.6926 | 0.144* | 0.478 (13) |
| H21E | 0.2647 | 0.9336 | 0.8230 | 0.144* | 0.478 (13) |
| H21F | 0.1152 | 0.8226 | 0.7970 | 0.144* | 0.478 (13) |
| Br1 | 0.0949 (6) | 0.0471 (4) | 0.1247 (8) | 0.0142 (4) | 0.0106 (5) | 0.0183 (4) |
| O1 | 0.064 (3) | 0.080 (3) | 0.037 (2) | 0.007 (2) | 0.0134 (19) | 0.035 (2) |
| O2 | 0.045 (2) | 0.106 (3) | 0.037 (2) | −0.023 (2) | −0.0018 (18) | 0.040 (2) |
| O3 | 0.046 (2) | 0.062 (2) | 0.052 (2) | −0.0011 (19) | 0.018 (2) | 0.020 (2) |
| N1 | 0.036 (3) | 0.052 (3) | 0.040 (3) | 0.003 (2) | 0.008 (2) | 0.023 (2) |
| N2 | 0.045 (3) | 0.060 (3) | 0.032 (3) | −0.008 (2) | −0.001 (2) | 0.021 (2) |
| N3 | 0.051 (3) | 0.051 (3) | 0.039 (3) | 0.001 (2) | 0.014 (2) | 0.020 (2) |
| C1 | 0.045 (3) | 0.045 (3) | 0.038 (3) | 0.006 (3) | 0.014 (3) | 0.023 (3) |
| C2 | 0.045 (3) | 0.040 (3) | 0.034 (3) | −0.001 (2) | 0.004 (2) | 0.020 (3) |
| C3 | 0.039 (3) | 0.052 (3) | 0.035 (3) | −0.004 (3) | 0.004 (3) | 0.024 (3) |
| C4 | 0.036 (3) | 0.058 (3) | 0.039 (4) | 0.003 (3) | 0.002 (3) | 0.025 (3) |
| C5 | 0.039 (3) | 0.049 (3) | 0.038 (3) | 0.006 (3) | 0.006 (3) | 0.023 (3) |
| C6 | 0.050 (3) | 0.047 (3) | 0.034 (3) | 0.002 (3) | 0.001 (2) | 0.020 (3) |
| C7 | 0.045 (3) | 0.043 (3) | 0.036 (3) | −0.001 (3) | 0.005 (3) | 0.018 (3) |
| C8 | 0.047 (3) | 0.047 (3) | 0.041 (3) | −0.002 (3) | 0.003 (3) | 0.022 (3) |
| C9 | 0.109 (6) | 0.056 (4) | 0.054 (4) | 0.007 (4) | 0.000 (4) | 0.031 (4) |
| C10 | 0.110 (6) | 0.055 (4) | 0.081 (5) | 0.012 (4) | 0.002 (4) | 0.034 (4) |
| C11 | 0.062 (4) | 0.048 (3) | 0.068 (5) | 0.004 (3) | 0.007 (3) | 0.020 (4) |
| C12 | 0.130 (7) | 0.057 (4) | 0.059 (5) | 0.007 (4) | 0.000 (4) | 0.020 (4) |
| C13 | 0.131 (6) | 0.048 (4) | 0.044 (4) | 0.008 (4) | −0.006 (4) | 0.020 (3) |
| C14 | 0.079 (5) | 0.057 (4) | 0.063 (4) | −0.005 (4) | 0.005 (4) | 0.030 (4) |
| C15 | 0.067 (5) | 0.049 (3) | 0.060 (4) | −0.004 (3) | 0.007 (4) | 0.017 (3) |
| C16 | 0.076 (5) | 0.099 (6) | 0.063 (5) | −0.004 (4) | 0.009 (4) | 0.029 (4) |
| C17 | 0.105 (7) | 0.100 (6) | 0.066 (6) | −0.007 (5) | 0.000 (5) | 0.028 (5) |
| C18 | 0.107 (8) | 0.081 (5) | 0.082 (7) | 0.006 (5) | −0.016 (6) | 0.016 (5) |
| C19 | 0.070 (6) | 0.098 (6) | 0.110 (8) | 0.006 (5) | −0.005 (6) | 0.024 (6) |
| C20 | 0.070 (5) | 0.092 (5) | 0.091 (6) | 0.003 (4) | 0.018 (5) | 0.032 (5) |
| C21 | 0.071 (9) | 0.059 (7) | 0.088 (10) | 0.001 (6) | 0.007 (7) | 0.042 (7) |
| C21' | 0.094 (13) | 0.066 (9) | 0.104 (13) | 0.014 (9) | −0.007 (10) | 0.031 (9) |
| Br1—C11 | 1.874 (6) | C10—H10 | 0.9300 |
| O1—C1 | 1.225 (5) | C11—C12 | 1.352 (8) |
| O2—C3 | 1.314 (5) | C12—C13 | 1.389 (8) |
| O2—H2 | 0.8200 | C12—H12 | 0.9300 |
| O3—C5 | 1.239 (5) | C13—H13 | 0.9300 |
| N1—C4 | 1.318 (6) | C14—C21' | 1.418 (15) |
| N1—C1 | 1.391 (6) | C14—C21 | 1.507 (12) |
| N1—H1 | 0.8600 | C14—C15 | 1.508 (9) |
| N2—C4 | 1.305 (6) | C14—H14 | 0.9800 |
| N2—C3 | 1.355 (6) | C14—H14' | 0.9800 |
| N3—C5 | 1.315 (6) | C15—C16 | 1.373 (9) |
| N3—C14 | 1.467 (7) | C15—C20 | 1.375 (9) |
| N3—H3 | 0.8600 | C16—C17 | 1.387 (10) |
| C1—C2 | 1.428 (7) | C16—H16 | 0.9300 |
| C2—C3 | 1.381 (6) | C17—C18 | 1.358 (11) |
| C2—C7 | 1.495 (7) | C17—H17 | 0.9300 |
| C4—H4 | 0.9300 | C18—C19 | 1.357 (11) |
| C5—C6 | 1.500 (7) | C18—H18 | 0.9300 |
| C6—C7 | 1.534 (6) | C19—C20 | 1.394 (11) |
| C6—H6A | 0.9700 | C19—H19 | 0.9300 |
| C6—H6B | 0.9700 | C20—H20 | 0.9300 |
| C7—C8 | 1.520 (7) | C21—H14' | 0.8878 |
| C7—H7 | 0.9800 | C21—H21A | 0.9600 |
| C8—C9 | 1.360 (7) | C21—H21B | 0.9600 |
| C8—C13 | 1.372 (8) | C21—H21C | 0.9600 |
| C9—C10 | 1.382 (8) | C21'—H21D | 0.9600 |
| C9—H9 | 0.9300 | C21'—H21E | 0.9600 |
| C10—C11 | 1.366 (9) | C21'—H21F | 0.9600 |
| C3—O2—H2 | 109.5 | C11—C12—C13 | 120.6 (6) |
| C4—N1—C1 | 123.0 (4) | C11—C12—H12 | 119.7 |
| C4—N1—H1 | 118.5 | C13—C12—H12 | 119.7 |
| C1—N1—H1 | 118.5 | C8—C13—C12 | 121.2 (6) |
| C4—N2—C3 | 116.3 (4) | C8—C13—H13 | 119.4 |
| C5—N3—C14 | 125.9 (5) | C12—C13—H13 | 119.4 |
| C5—N3—H3 | 117.1 | C21'—C14—N3 | 117.5 (8) |
| C14—N3—H3 | 117.1 | C21'—C14—C21 | 69.8 (8) |
| O1—C1—N1 | 119.3 (4) | N3—C14—C21 | 113.2 (7) |
| O1—C1—C2 | 125.8 (5) | C21'—C14—C15 | 116.8 (9) |
| N1—C1—C2 | 114.9 (5) | N3—C14—C15 | 111.5 (5) |
| C3—C2—C1 | 117.2 (5) | C21—C14—C15 | 122.5 (7) |
| C3—C2—C7 | 122.2 (4) | N3—C14—H14 | 102.1 |
| C1—C2—C7 | 120.5 (4) | C21—C14—H14 | 102.1 |
| O2—C3—N2 | 116.5 (4) | C15—C14—H14 | 102.1 |
| O2—C3—C2 | 119.0 (5) | C21'—C14—H14' | 103.5 |
| N2—C3—C2 | 124.6 (4) | N3—C14—H14' | 102.5 |
| N2—C4—N1 | 124.0 (5) | C15—C14—H14' | 102.1 |
| N2—C4—H4 | 118.0 | C16—C15—C20 | 118.0 (7) |
| N1—C4—H4 | 118.0 | C16—C15—C14 | 121.0 (6) |
| O3—C5—N3 | 121.8 (5) | C20—C15—C14 | 120.9 (7) |
| O3—C5—C6 | 121.8 (5) | C15—C16—C17 | 120.8 (7) |
| N3—C5—C6 | 116.3 (4) | C15—C16—H16 | 119.6 |
| C5—C6—C7 | 109.1 (4) | C17—C16—H16 | 119.6 |
| C5—C6—H6A | 109.9 | C18—C17—C16 | 119.9 (8) |
| C7—C6—H6A | 109.9 | C18—C17—H17 | 120.0 |
| C5—C6—H6B | 109.9 | C16—C17—H17 | 120.0 |
| C7—C6—H6B | 109.9 | C19—C18—C17 | 121.0 (8) |
| H6A—C6—H6B | 108.3 | C19—C18—H18 | 119.5 |
| C2—C7—C8 | 111.5 (4) | C17—C18—H18 | 119.5 |
| C2—C7—C6 | 112.3 (4) | C18—C19—C20 | 118.8 (8) |
| C8—C7—C6 | 114.0 (4) | C18—C19—H19 | 120.6 |
| C2—C7—H7 | 106.1 | C20—C19—H19 | 120.6 |
| C8—C7—H7 | 106.1 | C15—C20—C19 | 121.5 (8) |
| C6—C7—H7 | 106.1 | C15—C20—H20 | 119.2 |
| C9—C8—C13 | 117.0 (5) | C19—C20—H20 | 119.2 |
| C9—C8—C7 | 119.6 (5) | C14—C21—H21A | 109.5 |
| C13—C8—C7 | 123.3 (5) | C14—C21—H21B | 109.5 |
| C8—C9—C10 | 122.2 (6) | C14—C21—H21C | 109.5 |
| C8—C9—H9 | 118.9 | H14'—C21—H21C | 114.6 |
| C10—C9—H9 | 118.9 | C14—C21'—H21D | 109.5 |
| C11—C10—C9 | 119.9 (6) | C14—C21'—H21E | 109.5 |
| C11—C10—H10 | 120.1 | H21D—C21'—H21E | 109.5 |
| C9—C10—H10 | 120.1 | C14—C21'—H21F | 109.5 |
| C12—C11—C10 | 118.9 (6) | H21D—C21'—H21F | 109.5 |
| C12—C11—Br1 | 120.8 (5) | H21E—C21'—H21F | 109.5 |
| C10—C11—Br1 | 120.2 (5) | ||
| C4—N1—C1—O1 | −179.8 (5) | C13—C8—C9—C10 | 3.2 (10) |
| C4—N1—C1—C2 | 1.4 (7) | C7—C8—C9—C10 | −179.5 (6) |
| O1—C1—C2—C3 | −179.8 (5) | C8—C9—C10—C11 | −1.8 (11) |
| N1—C1—C2—C3 | −1.0 (6) | C9—C10—C11—C12 | −0.4 (11) |
| O1—C1—C2—C7 | −0.6 (8) | C9—C10—C11—Br1 | −176.9 (5) |
| N1—C1—C2—C7 | 178.1 (4) | C10—C11—C12—C13 | 0.9 (11) |
| C4—N2—C3—O2 | −178.8 (5) | Br1—C11—C12—C13 | 177.4 (6) |
| C4—N2—C3—C2 | 1.0 (8) | C9—C8—C13—C12 | −2.6 (10) |
| C1—C2—C3—O2 | 179.6 (4) | C7—C8—C13—C12 | −179.8 (6) |
| C7—C2—C3—O2 | 0.5 (7) | C11—C12—C13—C8 | 0.7 (12) |
| C1—C2—C3—N2 | −0.1 (8) | C5—N3—C14—C21' | −59.8 (11) |
| C7—C2—C3—N2 | −179.3 (5) | C5—N3—C14—C21 | −138.3 (7) |
| C3—N2—C4—N1 | −0.7 (8) | C5—N3—C14—C15 | 78.9 (7) |
| C1—N1—C4—N2 | −0.5 (8) | C21'—C14—C15—C16 | 51.4 (11) |
| C14—N3—C5—O3 | 2.8 (8) | N3—C14—C15—C16 | −87.7 (8) |
| C14—N3—C5—C6 | −175.3 (5) | C21—C14—C15—C16 | 133.6 (8) |
| O3—C5—C6—C7 | −65.8 (6) | C21'—C14—C15—C20 | −128.6 (10) |
| N3—C5—C6—C7 | 112.3 (5) | N3—C14—C15—C20 | 92.4 (7) |
| C3—C2—C7—C8 | −108.8 (5) | C21—C14—C15—C20 | −46.4 (10) |
| C1—C2—C7—C8 | 72.1 (6) | C20—C15—C16—C17 | −0.5 (10) |
| C3—C2—C7—C6 | 121.9 (5) | C14—C15—C16—C17 | 179.5 (6) |
| C1—C2—C7—C6 | −57.2 (6) | C15—C16—C17—C18 | 0.3 (12) |
| C5—C6—C7—C2 | −50.3 (6) | C16—C17—C18—C19 | 0.0 (13) |
| C5—C6—C7—C8 | −178.3 (4) | C17—C18—C19—C20 | 0.1 (13) |
| C2—C7—C8—C9 | 60.7 (7) | C16—C15—C20—C19 | 0.6 (11) |
| C6—C7—C8—C9 | −170.9 (5) | C14—C15—C20—C19 | −179.5 (7) |
| C2—C7—C8—C13 | −122.2 (6) | C18—C19—C20—C15 | −0.4 (12) |
| C6—C7—C8—C13 | 6.2 (8) |
| H··· | ||||
| N1—H1···O3i | 0.86 | 1.88 | 2.694 (3) | 158 |
| O2—H2···N2ii | 0.82 | 1.87 | 2.681 (3) | 170 |
| N3—H3···O1iii | 0.86 | 2.09 | 2.892 (3) | 155 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1⋯O3i | 0.86 | 1.88 | 2.694 (3) | 158 |
| O2—H2⋯N2ii | 0.82 | 1.87 | 2.681 (3) | 170 |
| N3—H3⋯O1iii | 0.86 | 2.09 | 2.892 (3) | 155 |
Symmetry codes: (i) ; (ii) ; (iii) .