Literature DB >> 21582156

3-(4-Bromo-phen-yl)-3-(4-hydr-oxy-6-oxo-1,6-dihydro-pyrimidin-5-yl)-N-[(S)-1-phenyl-ethyl]propanamide.

Ju-Hua Peng, Wen-Juan Hao, Shu-Jiang Tu.   

Abstract

In the mol-ecule of the title compound, C(21)H(20)BrN(3)O(3), the pyrimidine ring is oriented at dihedral angles of 80.87 (3) and 15.99 (3)°, respectively, to the pyrimidine and bromo-phenyl rings. The dihedral angle between the two benzene rings is 88.37 (3)°. In the crystal structure, inter-molecular N-H⋯O and O-H⋯N hydrogen bonds link the mol-ecules. A π-π contact between pyrimidine and phenyl rings [centroid-centroid distance = 3.776 (3) Å] may further stabilize the structure. The methine H and the methyl C and H atoms are disordered over two positions and were refined with occupancies of 0.522 (13) and 0.478 (13).

Entities:  

Year:  2009        PMID: 21582156      PMCID: PMC2968538          DOI: 10.1107/S1600536809003821

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background, see: Johar et al. (2005 ▶); Janeba et al. (2005 ▶); Soloducho et al. (2003 ▶); Mathews & Asokan (2007 ▶); Lagoja (2005 ▶); Michael (2005 ▶); Erian (1993 ▶). For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C21H20BrN3O3 M = 442.31 Triclinic, a = 7.147 (1) Å b = 12.5010 (14) Å c = 13.0940 (16) Å α = 118.506 (2)° β = 99.047 (1)° γ = 93.074 (1)° V = 1004.0 (2) Å3 Z = 2 Mo Kα radiation μ = 2.07 mm−1 T = 298 (2) K 0.20 × 0.18 × 0.17 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 1998 ▶) T min = 0.682, T max = 0.719 5285 measured reflections 3498 independent reflections 1810 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.062 wR(F 2) = 0.162 S = 1.06 3498 reflections 265 parameters H-atom parameters constrained Δρmax = 0.38 e Å−3 Δρmin = −0.43 e Å−3 Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT (Bruker, 1998 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809003821/hk2614sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809003821/hk2614Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H20BrN3O3Z = 2
Mr = 442.31F(000) = 452
Triclinic, P1Dx = 1.463 Mg m3
Hall symbol: -P 1Melting point = 551–553 K
a = 7.147 (1) ÅMo Kα radiation, λ = 0.71073 Å
b = 12.5010 (14) ÅCell parameters from 1260 reflections
c = 13.0940 (16) Åθ = 3.1–25.2°
α = 118.506 (2)°µ = 2.07 mm1
β = 99.047 (1)°T = 298 K
γ = 93.074 (1)°Block, colorless
V = 1004.0 (2) Å30.20 × 0.18 × 0.17 mm
Bruker SMART CCD area-detector diffractometer3498 independent reflections
Radiation source: fine-focus sealed tube1810 reflections with I > 2σ(I)
graphiteRint = 0.029
φ and ω scansθmax = 25.0°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Bruker, 1998)h = −8→8
Tmin = 0.682, Tmax = 0.719k = −14→14
5285 measured reflectionsl = −15→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.062Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.162H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.0673P)2] where P = (Fo2 + 2Fc2)/3
3498 reflections(Δ/σ)max = 0.001
265 parametersΔρmax = 0.38 e Å3
0 restraintsΔρmin = −0.43 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Br10.19659 (12)−0.19766 (6)0.27241 (8)0.1005 (4)
O10.5807 (5)0.4123 (3)0.5600 (3)0.0571 (10)
O20.3046 (5)0.4229 (4)0.8648 (3)0.0636 (11)
H20.34060.44550.93560.095*
O30.0791 (5)0.5971 (3)0.7386 (3)0.0556 (10)
N10.7505 (6)0.4888 (4)0.7474 (4)0.0428 (11)
H10.85120.50630.72670.051*
N20.6202 (6)0.4935 (4)0.9004 (4)0.0478 (11)
N30.3055 (6)0.6437 (4)0.6606 (4)0.0475 (11)
H30.36440.61600.60260.057*
C10.5815 (7)0.4342 (4)0.6618 (5)0.0408 (12)
C20.4203 (7)0.4109 (4)0.7041 (4)0.0394 (12)
C30.4498 (7)0.4424 (5)0.8225 (4)0.0417 (13)
C40.7634 (7)0.5149 (5)0.8586 (5)0.0450 (13)
H40.88160.55080.91040.054*
C50.1767 (7)0.5650 (5)0.6613 (4)0.0420 (13)
C60.1587 (8)0.4333 (4)0.5658 (4)0.0445 (13)
H6A0.23530.42750.50880.053*
H6B0.02620.40260.52410.053*
C70.2281 (7)0.3561 (4)0.6225 (4)0.0429 (13)
H70.13780.35850.67250.051*
C80.2223 (7)0.2209 (5)0.5337 (5)0.0457 (13)
C90.2544 (10)0.1396 (5)0.5734 (6)0.0734 (19)
H90.27860.16820.65480.088*
C100.2523 (11)0.0158 (6)0.4969 (7)0.084 (2)
H100.2783−0.03690.52710.101*
C110.2120 (9)−0.0288 (5)0.3769 (6)0.0642 (17)
C120.1737 (11)0.0496 (6)0.3352 (6)0.088 (2)
H120.14440.02000.25370.105*
C130.1777 (11)0.1740 (5)0.4129 (5)0.079 (2)
H130.14960.22630.38260.094*
C140.3576 (10)0.7744 (6)0.7498 (6)0.0682 (17)
H140.23800.79460.77760.082*0.522 (13)
H14'0.44280.80490.71460.082*0.478 (13)
C150.4908 (10)0.7923 (5)0.8600 (6)0.0644 (17)
C160.4207 (11)0.7902 (7)0.9509 (7)0.085 (2)
H160.28900.77820.94490.102*
C170.5439 (14)0.8058 (7)1.0516 (7)0.099 (2)
H170.49490.80391.11250.119*
C180.7363 (16)0.8239 (7)1.0612 (8)0.105 (3)
H180.81820.83441.12890.126*
C190.8110 (12)0.8270 (7)0.9733 (10)0.108 (3)
H190.94300.83940.98040.129*
C200.6863 (11)0.8114 (7)0.8724 (8)0.090 (2)
H200.73650.81380.81210.108*
C210.3839 (18)0.8563 (10)0.6965 (11)0.072 (5)0.522 (13)
H21A0.26890.84430.64100.108*0.522 (13)
H21B0.48880.83600.65620.108*0.522 (13)
H21C0.41080.94080.75850.108*0.522 (13)
C21'0.211 (2)0.8496 (13)0.7670 (15)0.096 (7)0.478 (13)
H21D0.15340.84330.69260.144*0.478 (13)
H21E0.26470.93360.82300.144*0.478 (13)
H21F0.11520.82260.79700.144*0.478 (13)
U11U22U33U12U13U23
Br10.0949 (6)0.0471 (4)0.1247 (8)0.0142 (4)0.0106 (5)0.0183 (4)
O10.064 (3)0.080 (3)0.037 (2)0.007 (2)0.0134 (19)0.035 (2)
O20.045 (2)0.106 (3)0.037 (2)−0.023 (2)−0.0018 (18)0.040 (2)
O30.046 (2)0.062 (2)0.052 (2)−0.0011 (19)0.018 (2)0.020 (2)
N10.036 (3)0.052 (3)0.040 (3)0.003 (2)0.008 (2)0.023 (2)
N20.045 (3)0.060 (3)0.032 (3)−0.008 (2)−0.001 (2)0.021 (2)
N30.051 (3)0.051 (3)0.039 (3)0.001 (2)0.014 (2)0.020 (2)
C10.045 (3)0.045 (3)0.038 (3)0.006 (3)0.014 (3)0.023 (3)
C20.045 (3)0.040 (3)0.034 (3)−0.001 (2)0.004 (2)0.020 (3)
C30.039 (3)0.052 (3)0.035 (3)−0.004 (3)0.004 (3)0.024 (3)
C40.036 (3)0.058 (3)0.039 (4)0.003 (3)0.002 (3)0.025 (3)
C50.039 (3)0.049 (3)0.038 (3)0.006 (3)0.006 (3)0.023 (3)
C60.050 (3)0.047 (3)0.034 (3)0.002 (3)0.001 (2)0.020 (3)
C70.045 (3)0.043 (3)0.036 (3)−0.001 (3)0.005 (3)0.018 (3)
C80.047 (3)0.047 (3)0.041 (3)−0.002 (3)0.003 (3)0.022 (3)
C90.109 (6)0.056 (4)0.054 (4)0.007 (4)0.000 (4)0.031 (4)
C100.110 (6)0.055 (4)0.081 (5)0.012 (4)0.002 (4)0.034 (4)
C110.062 (4)0.048 (3)0.068 (5)0.004 (3)0.007 (3)0.020 (4)
C120.130 (7)0.057 (4)0.059 (5)0.007 (4)0.000 (4)0.020 (4)
C130.131 (6)0.048 (4)0.044 (4)0.008 (4)−0.006 (4)0.020 (3)
C140.079 (5)0.057 (4)0.063 (4)−0.005 (4)0.005 (4)0.030 (4)
C150.067 (5)0.049 (3)0.060 (4)−0.004 (3)0.007 (4)0.017 (3)
C160.076 (5)0.099 (6)0.063 (5)−0.004 (4)0.009 (4)0.029 (4)
C170.105 (7)0.100 (6)0.066 (6)−0.007 (5)0.000 (5)0.028 (5)
C180.107 (8)0.081 (5)0.082 (7)0.006 (5)−0.016 (6)0.016 (5)
C190.070 (6)0.098 (6)0.110 (8)0.006 (5)−0.005 (6)0.024 (6)
C200.070 (5)0.092 (5)0.091 (6)0.003 (4)0.018 (5)0.032 (5)
C210.071 (9)0.059 (7)0.088 (10)0.001 (6)0.007 (7)0.042 (7)
C21'0.094 (13)0.066 (9)0.104 (13)0.014 (9)−0.007 (10)0.031 (9)
Br1—C111.874 (6)C10—H100.9300
O1—C11.225 (5)C11—C121.352 (8)
O2—C31.314 (5)C12—C131.389 (8)
O2—H20.8200C12—H120.9300
O3—C51.239 (5)C13—H130.9300
N1—C41.318 (6)C14—C21'1.418 (15)
N1—C11.391 (6)C14—C211.507 (12)
N1—H10.8600C14—C151.508 (9)
N2—C41.305 (6)C14—H140.9800
N2—C31.355 (6)C14—H14'0.9800
N3—C51.315 (6)C15—C161.373 (9)
N3—C141.467 (7)C15—C201.375 (9)
N3—H30.8600C16—C171.387 (10)
C1—C21.428 (7)C16—H160.9300
C2—C31.381 (6)C17—C181.358 (11)
C2—C71.495 (7)C17—H170.9300
C4—H40.9300C18—C191.357 (11)
C5—C61.500 (7)C18—H180.9300
C6—C71.534 (6)C19—C201.394 (11)
C6—H6A0.9700C19—H190.9300
C6—H6B0.9700C20—H200.9300
C7—C81.520 (7)C21—H14'0.8878
C7—H70.9800C21—H21A0.9600
C8—C91.360 (7)C21—H21B0.9600
C8—C131.372 (8)C21—H21C0.9600
C9—C101.382 (8)C21'—H21D0.9600
C9—H90.9300C21'—H21E0.9600
C10—C111.366 (9)C21'—H21F0.9600
C3—O2—H2109.5C11—C12—C13120.6 (6)
C4—N1—C1123.0 (4)C11—C12—H12119.7
C4—N1—H1118.5C13—C12—H12119.7
C1—N1—H1118.5C8—C13—C12121.2 (6)
C4—N2—C3116.3 (4)C8—C13—H13119.4
C5—N3—C14125.9 (5)C12—C13—H13119.4
C5—N3—H3117.1C21'—C14—N3117.5 (8)
C14—N3—H3117.1C21'—C14—C2169.8 (8)
O1—C1—N1119.3 (4)N3—C14—C21113.2 (7)
O1—C1—C2125.8 (5)C21'—C14—C15116.8 (9)
N1—C1—C2114.9 (5)N3—C14—C15111.5 (5)
C3—C2—C1117.2 (5)C21—C14—C15122.5 (7)
C3—C2—C7122.2 (4)N3—C14—H14102.1
C1—C2—C7120.5 (4)C21—C14—H14102.1
O2—C3—N2116.5 (4)C15—C14—H14102.1
O2—C3—C2119.0 (5)C21'—C14—H14'103.5
N2—C3—C2124.6 (4)N3—C14—H14'102.5
N2—C4—N1124.0 (5)C15—C14—H14'102.1
N2—C4—H4118.0C16—C15—C20118.0 (7)
N1—C4—H4118.0C16—C15—C14121.0 (6)
O3—C5—N3121.8 (5)C20—C15—C14120.9 (7)
O3—C5—C6121.8 (5)C15—C16—C17120.8 (7)
N3—C5—C6116.3 (4)C15—C16—H16119.6
C5—C6—C7109.1 (4)C17—C16—H16119.6
C5—C6—H6A109.9C18—C17—C16119.9 (8)
C7—C6—H6A109.9C18—C17—H17120.0
C5—C6—H6B109.9C16—C17—H17120.0
C7—C6—H6B109.9C19—C18—C17121.0 (8)
H6A—C6—H6B108.3C19—C18—H18119.5
C2—C7—C8111.5 (4)C17—C18—H18119.5
C2—C7—C6112.3 (4)C18—C19—C20118.8 (8)
C8—C7—C6114.0 (4)C18—C19—H19120.6
C2—C7—H7106.1C20—C19—H19120.6
C8—C7—H7106.1C15—C20—C19121.5 (8)
C6—C7—H7106.1C15—C20—H20119.2
C9—C8—C13117.0 (5)C19—C20—H20119.2
C9—C8—C7119.6 (5)C14—C21—H21A109.5
C13—C8—C7123.3 (5)C14—C21—H21B109.5
C8—C9—C10122.2 (6)C14—C21—H21C109.5
C8—C9—H9118.9H14'—C21—H21C114.6
C10—C9—H9118.9C14—C21'—H21D109.5
C11—C10—C9119.9 (6)C14—C21'—H21E109.5
C11—C10—H10120.1H21D—C21'—H21E109.5
C9—C10—H10120.1C14—C21'—H21F109.5
C12—C11—C10118.9 (6)H21D—C21'—H21F109.5
C12—C11—Br1120.8 (5)H21E—C21'—H21F109.5
C10—C11—Br1120.2 (5)
C4—N1—C1—O1−179.8 (5)C13—C8—C9—C103.2 (10)
C4—N1—C1—C21.4 (7)C7—C8—C9—C10−179.5 (6)
O1—C1—C2—C3−179.8 (5)C8—C9—C10—C11−1.8 (11)
N1—C1—C2—C3−1.0 (6)C9—C10—C11—C12−0.4 (11)
O1—C1—C2—C7−0.6 (8)C9—C10—C11—Br1−176.9 (5)
N1—C1—C2—C7178.1 (4)C10—C11—C12—C130.9 (11)
C4—N2—C3—O2−178.8 (5)Br1—C11—C12—C13177.4 (6)
C4—N2—C3—C21.0 (8)C9—C8—C13—C12−2.6 (10)
C1—C2—C3—O2179.6 (4)C7—C8—C13—C12−179.8 (6)
C7—C2—C3—O20.5 (7)C11—C12—C13—C80.7 (12)
C1—C2—C3—N2−0.1 (8)C5—N3—C14—C21'−59.8 (11)
C7—C2—C3—N2−179.3 (5)C5—N3—C14—C21−138.3 (7)
C3—N2—C4—N1−0.7 (8)C5—N3—C14—C1578.9 (7)
C1—N1—C4—N2−0.5 (8)C21'—C14—C15—C1651.4 (11)
C14—N3—C5—O32.8 (8)N3—C14—C15—C16−87.7 (8)
C14—N3—C5—C6−175.3 (5)C21—C14—C15—C16133.6 (8)
O3—C5—C6—C7−65.8 (6)C21'—C14—C15—C20−128.6 (10)
N3—C5—C6—C7112.3 (5)N3—C14—C15—C2092.4 (7)
C3—C2—C7—C8−108.8 (5)C21—C14—C15—C20−46.4 (10)
C1—C2—C7—C872.1 (6)C20—C15—C16—C17−0.5 (10)
C3—C2—C7—C6121.9 (5)C14—C15—C16—C17179.5 (6)
C1—C2—C7—C6−57.2 (6)C15—C16—C17—C180.3 (12)
C5—C6—C7—C2−50.3 (6)C16—C17—C18—C190.0 (13)
C5—C6—C7—C8−178.3 (4)C17—C18—C19—C200.1 (13)
C2—C7—C8—C960.7 (7)C16—C15—C20—C190.6 (11)
C6—C7—C8—C9−170.9 (5)C14—C15—C20—C19−179.5 (7)
C2—C7—C8—C13−122.2 (6)C18—C19—C20—C15−0.4 (12)
C6—C7—C8—C136.2 (8)
D—H···AD—HH···AD···AD—H···A
N1—H1···O3i0.861.882.694 (3)158
O2—H2···N2ii0.821.872.681 (3)170
N3—H3···O1iii0.862.092.892 (3)155
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O3i0.861.882.694 (3)158
O2—H2⋯N2ii0.821.872.681 (3)170
N3—H3⋯O1iii0.862.092.892 (3)155

Symmetry codes: (i) ; (ii) ; (iii) .

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