Literature DB >> 21582155

N-Cyclo-pentyl-3-(4-hydr-oxy-6-oxo-1,6-dihydro-pyrimidin-5-yl)-3-p-tolyl-propanamide.

Xing-Han Wang1, Wen-Juan Hao, Shu-Jiang Tu.   

Abstract

In the mol-ecule of the title compound, C(19)H(23)N(3)O(3), the six-membered rings are oriented at a dihedral angle of 73.06 (3)°. The cyclo-pentyl ring adopts an envelope conformation. In the crystal structure, inter-molecular N-H⋯O and O-H⋯N hydrogen bonds link the mol-ecules. In the tolyl ring, the H atoms and all but one of the C atoms are disordered over two positions and were refined with occupancies of 0.51 (3) and 0.49 (3).

Entities:  

Year:  2009        PMID: 21582155      PMCID: PMC2968560          DOI: 10.1107/S1600536809001391

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background, see: Johar et al. (2005 ▶); Janeba et al. (2005 ▶); Soloducho et al. (2003 ▶); Mathews & Asokan (2007 ▶); Lagoja (2005 ▶); Michael (2005 ▶); Erian (1993 ▶). For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C19H23N3O3 M = 341.40 Monoclinic, a = 11.6798 (10) Å b = 14.8279 (16) Å c = 11.8422 (12) Å β = 115.022 (2)° V = 1858.4 (3) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 298 (2) K 0.40 × 0.38 × 0.23 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 1998 ▶) T min = 0.967, T max = 0.981 9104 measured reflections 3262 independent reflections 1965 reflections with I > 2σ(I) R int = 0.034

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.130 S = 1.03 3262 reflections 281 parameters H-atom parameters constrained Δρmax = 0.17 e Å−3 Δρmin = −0.21 e Å−3 Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT (Bruker, 1998 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809001391/hk2612sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809001391/hk2612Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H23N3O3F(000) = 728
Mr = 341.40Dx = 1.220 Mg m3
Monoclinic, P21/cMelting point = 547–549 K
Hall symbol: -P 2ybcMo Kα radiation, λ = 0.71073 Å
a = 11.6798 (10) ÅCell parameters from 2142 reflections
b = 14.8279 (16) Åθ = 2.4–25.3°
c = 11.8422 (12) ŵ = 0.08 mm1
β = 115.022 (2)°T = 298 K
V = 1858.4 (3) Å3Block, colorless
Z = 40.40 × 0.38 × 0.23 mm
Bruker SMART CCD area-detector diffractometer3262 independent reflections
Radiation source: fine-focus sealed tube1965 reflections with I > 2σ(I)
graphiteRint = 0.034
φ and ω scansθmax = 25.0°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Bruker, 1998)h = −13→13
Tmin = 0.967, Tmax = 0.981k = −17→9
9104 measured reflectionsl = −14→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.041Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.130H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0557P)2 + 0.3901P] where P = (Fo2 + 2Fc2)/3
3262 reflections(Δ/σ)max = 0.001
281 parametersΔρmax = 0.17 e Å3
0 restraintsΔρmin = −0.21 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
O10.51033 (15)0.18524 (10)0.24325 (14)0.0478 (4)
O20.58111 (16)0.48802 (10)0.17050 (14)0.0519 (5)
H20.56500.51920.10840.078*
O30.36199 (16)0.38438 (11)0.37082 (15)0.0565 (5)
N10.45054 (17)0.24273 (12)0.04951 (16)0.0415 (5)
H10.42230.19070.01810.050*
N20.47888 (17)0.39142 (12)0.00944 (16)0.0407 (5)
N30.36553 (17)0.50839 (13)0.26475 (16)0.0436 (5)
H30.41050.54960.25200.052*
C10.5061 (2)0.25152 (15)0.1789 (2)0.0366 (5)
C20.5537 (2)0.33982 (14)0.22258 (19)0.0348 (5)
C30.5389 (2)0.40604 (15)0.13651 (19)0.0369 (5)
C40.4392 (2)0.31040 (16)−0.0272 (2)0.0430 (6)
H40.40040.2992−0.11250.052*
C50.4234 (2)0.44262 (15)0.3448 (2)0.0414 (6)
C60.5653 (2)0.44127 (15)0.4011 (2)0.0433 (6)
H6A0.59770.44290.49120.052*
H6B0.59570.49450.37460.052*
C70.6153 (2)0.35575 (14)0.36151 (19)0.0385 (5)
H70.59050.30470.39880.046*
C80.7589 (2)0.35570 (16)0.4198 (2)0.0493 (6)
C90.822 (3)0.3612 (18)0.342 (3)0.059 (4)0.51 (3)
H90.77590.36260.25590.071*0.51 (3)
C9'0.838 (3)0.382 (2)0.370 (3)0.069 (5)0.49 (3)
H9'0.80430.40400.28840.082*0.49 (3)
C100.952 (3)0.3646 (19)0.392 (3)0.074 (4)0.51 (3)
H100.99180.36980.33830.089*0.51 (3)
C10'0.970 (3)0.377 (2)0.437 (2)0.083 (6)0.49 (3)
H10'1.02220.39230.39910.100*0.49 (3)
C111.025 (4)0.361 (2)0.517 (3)0.072 (6)0.51 (3)
C11'1.023 (4)0.350 (3)0.561 (3)0.080 (8)0.49 (3)
C120.964 (2)0.3535 (19)0.596 (2)0.082 (5)0.51 (3)
H121.01120.35060.68180.098*0.51 (3)
C12'0.943 (3)0.3240 (16)0.611 (2)0.084 (5)0.49 (3)
H12'0.97640.30370.69250.101*0.49 (3)
C130.833 (4)0.351 (2)0.545 (4)0.070 (6)0.51 (3)
H130.79420.34530.59910.084*0.51 (3)
C13'0.813 (4)0.327 (2)0.544 (4)0.070 (5)0.49 (3)
H13'0.76110.30880.58210.084*0.49 (3)
C141.1676 (18)0.3628 (15)0.573 (2)0.110 (5)0.51 (3)
H14A1.19950.30230.58240.164*0.51 (3)
H14B1.19910.39140.65340.164*0.51 (3)
H14C1.19480.39600.51940.164*0.51 (3)
C14'1.1691 (19)0.3465 (18)0.635 (2)0.121 (7)0.49 (3)
H14D1.19050.33410.72090.181*0.49 (3)
H14E1.20450.40350.62770.181*0.49 (3)
H14F1.20240.29980.60110.181*0.49 (3)
C150.2281 (2)0.51310 (17)0.1977 (2)0.0539 (7)
H150.18810.50340.25460.065*
C160.1793 (3)0.4455 (2)0.0910 (3)0.0839 (10)
H16A0.23340.39270.11080.101*
H16B0.09410.42640.07430.101*
C170.1810 (3)0.4946 (3)−0.0198 (3)0.1004 (12)
H17A0.24840.4714−0.03900.121*
H17B0.10140.4860−0.09210.121*
C180.2015 (3)0.5919 (3)0.0119 (3)0.0961 (12)
H18A0.13920.6282−0.05340.115*
H18B0.28510.61030.02210.115*
C190.1885 (3)0.60299 (19)0.1318 (3)0.0689 (8)
H19A0.10180.61690.11580.083*
H19B0.24280.65100.18160.083*
U11U22U33U12U13U23
N10.0550 (12)0.0301 (10)0.0396 (11)−0.0049 (9)0.0201 (9)−0.0058 (9)
N20.0532 (12)0.0373 (11)0.0322 (10)−0.0031 (9)0.0187 (9)−0.0019 (8)
N30.0434 (12)0.0401 (11)0.0451 (11)0.0029 (9)0.0167 (9)0.0092 (9)
O10.0608 (11)0.0341 (9)0.0479 (10)0.0002 (8)0.0222 (8)0.0041 (7)
O20.0760 (12)0.0353 (9)0.0387 (9)−0.0096 (8)0.0189 (8)0.0005 (7)
O30.0634 (12)0.0471 (10)0.0624 (11)0.0063 (9)0.0300 (9)0.0180 (9)
C10.0384 (13)0.0360 (13)0.0370 (13)0.0040 (10)0.0176 (10)−0.0014 (10)
C20.0396 (13)0.0326 (12)0.0320 (12)0.0015 (10)0.0150 (10)−0.0005 (10)
C30.0435 (13)0.0342 (13)0.0324 (13)−0.0015 (10)0.0155 (11)−0.0039 (10)
C40.0534 (15)0.0426 (15)0.0342 (13)−0.0021 (12)0.0196 (11)−0.0062 (11)
C50.0538 (15)0.0362 (13)0.0349 (13)0.0062 (12)0.0195 (11)−0.0003 (11)
C60.0509 (15)0.0420 (14)0.0310 (12)0.0038 (11)0.0114 (11)−0.0028 (10)
C70.0445 (14)0.0340 (12)0.0323 (12)0.0025 (10)0.0116 (10)0.0012 (10)
C80.0484 (15)0.0392 (14)0.0495 (16)0.0021 (12)0.0102 (13)−0.0047 (12)
C90.041 (8)0.064 (9)0.064 (9)−0.007 (6)0.014 (7)−0.012 (6)
C9'0.049 (7)0.076 (14)0.062 (11)−0.009 (9)0.007 (8)0.001 (7)
C100.047 (9)0.092 (9)0.070 (13)−0.004 (6)0.013 (10)−0.010 (8)
C10'0.047 (10)0.108 (12)0.074 (19)−0.011 (7)0.006 (12)−0.012 (11)
C110.050 (8)0.084 (9)0.067 (18)−0.003 (6)0.009 (12)0.005 (13)
C11'0.054 (10)0.090 (13)0.071 (18)0.006 (10)0.003 (12)−0.003 (12)
C120.054 (10)0.097 (14)0.068 (9)−0.011 (10)0.000 (7)−0.004 (8)
C12'0.058 (10)0.081 (11)0.078 (7)−0.006 (7)−0.007 (6)0.014 (7)
C130.054 (12)0.078 (15)0.057 (6)−0.006 (9)0.003 (7)−0.004 (10)
C13'0.054 (12)0.078 (15)0.058 (6)−0.006 (9)0.003 (7)−0.003 (10)
C140.056 (5)0.126 (9)0.106 (13)0.000 (5)−0.005 (9)0.007 (10)
C14'0.054 (5)0.150 (14)0.112 (13)0.000 (7)−0.010 (10)−0.010 (12)
C150.0443 (15)0.0508 (16)0.0633 (17)0.0038 (12)0.0195 (13)0.0137 (13)
C160.0547 (19)0.068 (2)0.097 (3)−0.0028 (16)0.0014 (17)−0.0018 (19)
C170.084 (3)0.133 (4)0.082 (3)0.023 (2)0.033 (2)−0.003 (2)
C180.077 (2)0.119 (3)0.078 (2)−0.004 (2)0.0194 (19)0.036 (2)
C190.0533 (17)0.0587 (18)0.083 (2)0.0101 (14)0.0174 (15)0.0209 (16)
O1—C11.232 (2)C12—C131.39 (5)
O2—C31.310 (2)C12—H120.9300
O2—H20.8200C13—H130.9300
O3—C51.242 (3)C14—H14A0.9600
N1—C41.322 (3)C14—H14B0.9600
N1—C11.395 (3)C14—H14C0.9600
N1—H10.8600C9'—C10'1.41 (5)
N2—C41.295 (3)C9'—H9'0.9300
N2—C31.382 (3)C10'—C11'1.38 (3)
N3—C51.328 (3)C10'—H10'0.9300
N3—C151.460 (3)C11'—C12'1.35 (4)
N3—H30.8600C11'—C14'1.56 (4)
C1—C21.431 (3)C12'—C13'1.38 (6)
C2—C31.373 (3)C12'—H12'0.9300
C2—C71.510 (3)C13'—H13'0.9300
C4—H40.9300C14'—H14D0.9600
C5—C61.503 (3)C14'—H14E0.9600
C6—C71.549 (3)C14'—H14F0.9600
C6—H6A0.9700C15—C191.515 (3)
C6—H6B0.9700C15—C161.523 (4)
C7—C81.520 (3)C15—H150.9800
C7—H70.9800C16—C171.509 (5)
C8—C9'1.35 (4)C16—H16A0.9700
C8—C131.37 (4)C16—H16B0.9700
C8—C13'1.40 (4)C17—C181.485 (5)
C8—C91.41 (3)C17—H17A0.9700
C9—C101.38 (5)C17—H17B0.9700
C9—H90.9300C18—C191.500 (4)
C10—C111.37 (3)C18—H18A0.9700
C10—H100.9300C18—H18B0.9700
C11—C121.39 (4)C19—H19A0.9700
C11—C141.51 (4)C19—H19B0.9700
C3—O2—H2109.5C11—C14—H14A109.5
C4—N1—C1123.31 (19)C11—C14—H14B109.5
C4—N1—H1118.3H14A—C14—H14B109.5
C1—N1—H1118.3C11—C14—H14C109.5
C4—N2—C3117.10 (19)H14A—C14—H14C109.5
C5—N3—C15122.2 (2)H14B—C14—H14C109.5
C5—N3—H3118.9C8—C9'—C10'121 (3)
C15—N3—H3118.9C8—C9'—H9'119.3
O1—C1—N1118.9 (2)C10'—C9'—H9'119.3
O1—C1—C2126.8 (2)C11'—C10'—C9'121 (3)
N1—C1—C2114.31 (19)C11'—C10'—H10'119.7
C3—C2—C1118.59 (19)C9'—C10'—H10'119.7
C3—C2—C7123.34 (18)C12'—C11'—C10'118 (3)
C1—C2—C7118.06 (18)C12'—C11'—C14'123 (2)
O2—C3—C2121.54 (19)C10'—C11'—C14'120 (2)
O2—C3—N2115.58 (18)C11'—C12'—C13'123 (3)
C2—C3—N2122.88 (19)C11'—C12'—H12'118.7
N2—C4—N1123.8 (2)C13'—C12'—H12'118.7
N2—C4—H4118.1C12'—C13'—C8120 (3)
N1—C4—H4118.1C12'—C13'—H13'119.9
O3—C5—N3121.0 (2)C8—C13'—H13'119.9
O3—C5—C6121.7 (2)C11'—C14'—H14D109.5
N3—C5—C6117.3 (2)C11'—C14'—H14E109.5
C5—C6—C7111.29 (18)H14D—C14'—H14E109.5
C5—C6—H6A109.4C11'—C14'—H14F109.5
C7—C6—H6A109.4H14D—C14'—H14F109.5
C5—C6—H6B109.4H14E—C14'—H14F109.5
C7—C6—H6B109.4N3—C15—C19110.4 (2)
H6A—C6—H6B108.0N3—C15—C16111.1 (2)
C2—C7—C8114.88 (19)C19—C15—C16103.1 (2)
C2—C7—C6112.99 (17)N3—C15—H15110.7
C8—C7—C6110.36 (18)C19—C15—H15110.7
C2—C7—H7105.9C16—C15—H15110.7
C8—C7—H7105.9C17—C16—C15105.4 (3)
C6—C7—H7105.9C17—C16—H16A110.7
C9'—C8—C13104.8 (18)C15—C16—H16A110.7
C9'—C8—C13'118 (2)C17—C16—H16B110.7
C13—C8—C9116 (2)C15—C16—H16B110.7
C13'—C8—C9125 (2)H16A—C16—H16B108.8
C9'—C8—C7129.0 (14)C18—C17—C16108.0 (3)
C13—C8—C7124.3 (17)C18—C17—H17A110.1
C13'—C8—C7113.3 (17)C16—C17—H17A110.1
C9—C8—C7119.2 (12)C18—C17—H17B110.1
C10—C9—C8121 (2)C16—C17—H17B110.1
C10—C9—H9119.6H17A—C17—H17B108.4
C8—C9—H9119.6C17—C18—C19106.0 (3)
C11—C10—C9122 (3)C17—C18—H18A110.5
C11—C10—H10119.0C19—C18—H18A110.5
C9—C10—H10119.0C17—C18—H18B110.5
C10—C11—C12118 (3)C19—C18—H18B110.5
C10—C11—C14123 (3)H18A—C18—H18B108.7
C12—C11—C14119 (2)C18—C19—C15105.1 (3)
C13—C12—C11120 (3)C18—C19—H19A110.7
C13—C12—H12120.1C15—C19—H19A110.7
C11—C12—H12120.1C18—C19—H19B110.7
C8—C13—C12123 (3)C15—C19—H19B110.7
C8—C13—H13118.5H19A—C19—H19B108.8
C12—C13—H13118.5
C4—N1—C1—O1178.5 (2)C7—C8—C9—C10177.6 (19)
C4—N1—C1—C2−1.8 (3)C8—C9—C10—C112(4)
O1—C1—C2—C3−179.2 (2)C9—C10—C11—C120(5)
N1—C1—C2—C31.2 (3)C9—C10—C11—C14179 (3)
O1—C1—C2—C7−0.4 (3)C10—C11—C12—C130(5)
N1—C1—C2—C7179.93 (18)C14—C11—C12—C13−180 (3)
C1—C2—C3—O2−179.52 (19)C9'—C8—C13—C12−13 (3)
C7—C2—C3—O21.8 (3)C13'—C8—C13—C12126 (14)
C1—C2—C3—N20.7 (3)C9—C8—C13—C122(4)
C7—C2—C3—N2−178.0 (2)C7—C8—C13—C12−178 (2)
C4—N2—C3—O2178.1 (2)C11—C12—C13—C8−1(5)
C4—N2—C3—C2−2.1 (3)C13—C8—C9'—C10'16 (3)
C3—N2—C4—N11.5 (3)C13'—C8—C9'—C10'3(3)
C1—N1—C4—N20.5 (3)C9—C8—C9'—C10'−118 (10)
C15—N3—C5—O3−3.8 (3)C7—C8—C9'—C10'−179.8 (17)
C15—N3—C5—C6175.70 (19)C8—C9'—C10'—C11'−4(5)
O3—C5—C6—C763.5 (3)C9'—C10'—C11'—C12'4(5)
N3—C5—C6—C7−115.9 (2)C9'—C10'—C11'—C14'−179 (2)
C3—C2—C7—C8−80.4 (3)C10'—C11'—C12'—C13'−2(5)
C1—C2—C7—C8100.9 (2)C14'—C11'—C12'—C13'−179 (3)
C3—C2—C7—C647.4 (3)C11'—C12'—C13'—C81(5)
C1—C2—C7—C6−131.3 (2)C9'—C8—C13'—C12'−1(4)
C5—C6—C7—C250.0 (2)C13—C8—C13'—C12'−47 (10)
C5—C6—C7—C8−179.86 (19)C9—C8—C13'—C12'18 (4)
C2—C7—C8—C9'31.9 (16)C7—C8—C13'—C12'−179 (2)
C6—C7—C8—C9'−97.3 (16)C5—N3—C15—C19169.8 (2)
C2—C7—C8—C13−166.3 (17)C5—N3—C15—C16−76.5 (3)
C6—C7—C8—C1364.5 (18)N3—C15—C16—C17−89.0 (3)
C2—C7—C8—C13'−150.5 (16)C19—C15—C16—C1729.2 (3)
C6—C7—C8—C13'80.4 (16)C15—C16—C17—C18−12.2 (4)
C2—C7—C8—C913.8 (13)C16—C17—C18—C19−10.0 (4)
C6—C7—C8—C9−115.4 (13)C17—C18—C19—C1528.6 (3)
C9'—C8—C9—C1050 (8)N3—C15—C19—C1883.0 (3)
C13—C8—C9—C10−2(3)C16—C15—C19—C18−35.7 (3)
C13'—C8—C9—C10−20 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1···O3i0.861.932.692 (3)147
O2—H2···N2ii0.821.832.639 (3)167
N3—H3···O1iii0.862.203.017 (3)158
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O3i0.861.932.692 (3)147
O2—H2⋯N2ii0.821.832.639 (3)167
N3—H3⋯O1iii0.862.203.017 (3)158

Symmetry codes: (i) ; (ii) ; (iii) .

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