Literature DB >> 21582153

Methyl 7-meth-oxy-9-oxo-9H-xanthene-2-carboxyl-ate.

Paweł Niedziałkowski1, Tadeusz Ossowski, Artur Sikorski.   

Abstract

The crystal structure of the title compound, C(16)H(12)O(5), is stabilized by C-H⋯O hydrogen bonds and C=O⋯π inter-actions; π-π inter-actions are also present. With respective average deviations from planarity of 0.003 (2) and 0.002 (1) Å, the xanthone and ester fragments are oriented at an angle of 2.8 (2)° with respect to each other. The mean planes of the xanthone skeleton lie either parallel to each other or are inclined at an angle of 85.5 (2)° in the crystal structure.

Entities:  

Year:  2009        PMID: 21582153      PMCID: PMC2968451          DOI: 10.1107/S1600536809003602

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background and uses of xanthones, see: Chen et al. (1993 ▶); Denisova-Dyatlova & Glyzin (1982 ▶); Fukai et al. (2005 ▶); Gopalakrishnan et al. (1997 ▶); Ignatushchenko et al. (2000 ▶); Ito et al. (2003 ▶); Librowski et al. (2005 ▶); Pfister et al. (1972 ▶, 1980 ▶). For related structures, see: Evans et al. (2004 ▶); Shi et al. (2004 ▶); Macias et al. (2001 ▶). For synthesis, see: Geertsema et al. (2006 ▶). For background to the various types of inter­molecular inter­actions, see: Bianchi et al. (2004 ▶); Steiner (1999 ▶) Santos-Contreras et al. (2007 ▶); Hunter & Sanders (1990 ▶). For analysis of inter­molecular inter­actions, see: Spek (2003 ▶).

Experimental

Crystal data

C16H12O5 M = 284.26 Monoclinic, a = 4.7709 (4) Å b = 10.5375 (8) Å c = 26.7854 (19) Å β = 93.266 (7)° V = 1344.40 (18) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 295 (2) K 0.20 × 0.04 × 0.04 mm

Data collection

Oxford Diffraction Ruby CCD diffractometer Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2008 ▶) T min = 0.994, T max = 0.997 23842 measured reflections 2366 independent reflections 1051 reflections with I > 2σ(I) R int = 0.086

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.092 S = 0.81 2366 reflections 193 parameters H-atom parameters constrained Δρmax = 0.13 e Å−3 Δρmin = −0.14 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2008 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2008 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPII (Johnson, 1976 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2003 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809003602/xu2476sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809003602/xu2476Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H12O5F(000) = 592.0
Mr = 284.26Dx = 1.404 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2126 reflections
a = 4.7709 (4) Åθ = 3.0–25.0°
b = 10.5375 (8) ŵ = 0.11 mm1
c = 26.7854 (19) ÅT = 295 K
β = 93.266 (7)°Needle, white
V = 1344.40 (18) Å30.2 × 0.04 × 0.04 mm
Z = 4
Oxford Diffraction Ruby CCD diffractometer2366 independent reflections
Radiation source: Enhance (Mo) X-ray Source1051 reflections with I > 2σ(I)
graphiteRint = 0.086
Detector resolution: 10.4002 pixels mm-1θmax = 25.0°, θmin = 3.0°
ω scansh = −5→5
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2008)k = −12→12
Tmin = 0.994, Tmax = 0.997l = −31→31
23842 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.092H-atom parameters constrained
S = 0.81w = 1/[σ2(Fo2) + (0.0471P)2] where P = (Fo2 + 2Fc2)/3
2366 reflections(Δ/σ)max = 0.001
193 parametersΔρmax = 0.13 e Å3
0 restraintsΔρmin = −0.13 e Å3
Experimental. CrysAlis RED, Version 1.171.32.15 (Oxford Diffraction Ltd., 2008) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.4869 (4)0.3741 (2)0.37390 (8)0.0507 (6)
H10.49500.40050.34090.061*
C20.6568 (4)0.4321 (2)0.41017 (8)0.0531 (6)
C30.6434 (5)0.3912 (2)0.45962 (9)0.0678 (7)
H30.75840.42890.48460.081*
C40.4634 (5)0.2964 (3)0.47187 (9)0.0735 (7)
H40.45480.27030.50490.088*
C5−0.2272 (5)−0.0083 (2)0.43087 (9)0.0742 (7)
H5−0.2221−0.02870.46470.089*
C6−0.4064 (5)−0.0705 (2)0.39752 (9)0.0723 (7)
H6−0.5229−0.13370.40890.087*
C7−0.4169 (4)−0.0408 (2)0.34712 (9)0.0570 (6)
C8−0.2448 (4)0.0520 (2)0.33022 (8)0.0506 (6)
H8−0.25140.07230.29640.061*
C90.1240 (4)0.2157 (2)0.34601 (8)0.0485 (5)
O100.1221 (3)0.14529 (15)0.44927 (5)0.0685 (5)
C110.3026 (4)0.2770 (2)0.38514 (7)0.0469 (5)
C120.2945 (4)0.2399 (2)0.43445 (8)0.0567 (6)
C13−0.0592 (4)0.1163 (2)0.36375 (7)0.0459 (5)
C14−0.0538 (4)0.0853 (2)0.41369 (8)0.0567 (6)
C150.8493 (5)0.5368 (2)0.39863 (10)0.0616 (6)
O160.9949 (4)0.59309 (17)0.42912 (7)0.0897 (6)
O170.8478 (3)0.56064 (15)0.34987 (6)0.0748 (5)
C181.0307 (5)0.6610 (2)0.33454 (10)0.0877 (8)
H18A0.99310.67830.29960.132*
H18B1.22280.63520.34030.132*
H18C0.99780.73620.35360.132*
O19−0.6050 (3)−0.10926 (15)0.31785 (6)0.0734 (5)
C20−0.6235 (5)−0.0814 (3)0.26581 (9)0.0837 (8)
H20A−0.7623−0.13510.24930.126*
H20B−0.4446−0.09620.25220.126*
H20C−0.67600.00580.26090.126*
O210.1291 (3)0.24526 (14)0.30176 (5)0.0657 (5)
U11U22U33U12U13U23
C10.0541 (13)0.0547 (16)0.0427 (13)0.0009 (12)−0.0024 (11)−0.0013 (11)
C20.0517 (13)0.0553 (16)0.0518 (15)−0.0049 (11)−0.0025 (11)−0.0058 (12)
C30.0741 (15)0.0794 (19)0.0481 (16)−0.0117 (14)−0.0139 (11)−0.0116 (14)
C40.0851 (17)0.087 (2)0.0471 (14)−0.0246 (16)−0.0071 (13)0.0017 (14)
C50.0855 (16)0.084 (2)0.0519 (15)−0.0292 (15)−0.0047 (13)0.0166 (14)
C60.0777 (16)0.0703 (19)0.0681 (19)−0.0229 (14)−0.0016 (14)0.0133 (15)
C70.0565 (13)0.0599 (16)0.0535 (15)−0.0049 (13)−0.0053 (11)0.0004 (13)
C80.0532 (12)0.0517 (15)0.0464 (13)−0.0031 (11)−0.0022 (11)−0.0001 (11)
C90.0491 (13)0.0508 (15)0.0449 (14)0.0006 (11)−0.0036 (11)0.0031 (12)
O100.0800 (10)0.0808 (13)0.0429 (9)−0.0254 (9)−0.0104 (8)0.0102 (8)
C110.0475 (12)0.0498 (15)0.0427 (13)−0.0023 (11)−0.0027 (10)0.0012 (11)
C120.0584 (13)0.0629 (17)0.0476 (14)−0.0139 (13)−0.0063 (11)0.0007 (12)
C130.0470 (12)0.0466 (14)0.0436 (14)0.0005 (11)−0.0022 (10)0.0020 (11)
C140.0617 (14)0.0596 (17)0.0473 (15)−0.0124 (12)−0.0087 (11)0.0037 (12)
C150.0620 (15)0.0620 (18)0.0598 (17)−0.0037 (13)−0.0044 (12)−0.0063 (15)
O160.1020 (13)0.0906 (14)0.0742 (12)−0.0367 (11)−0.0143 (10)−0.0106 (11)
O170.0865 (11)0.0729 (13)0.0641 (12)−0.0294 (10)−0.0039 (9)0.0052 (9)
C180.0935 (18)0.078 (2)0.092 (2)−0.0274 (16)0.0074 (15)0.0129 (16)
O190.0772 (10)0.0744 (12)0.0671 (12)−0.0265 (9)−0.0081 (8)−0.0049 (9)
C200.0931 (18)0.102 (2)0.0549 (17)−0.0282 (16)−0.0058 (13)−0.0135 (15)
O210.0744 (10)0.0781 (12)0.0432 (9)−0.0200 (8)−0.0084 (7)0.0105 (8)
C1—C21.373 (3)C9—O211.227 (2)
C1—C111.394 (3)C9—C131.461 (3)
C1—H10.9300C9—C111.462 (3)
C2—C31.398 (3)O10—C121.366 (2)
C2—C151.480 (3)O10—C141.386 (2)
C3—C41.369 (3)C11—C121.380 (3)
C3—H30.9300C13—C141.376 (3)
C4—C121.384 (3)C15—O161.199 (2)
C4—H40.9300C15—O171.330 (3)
C5—C61.368 (3)O17—C181.446 (3)
C5—C141.383 (3)C18—H18A0.9600
C5—H50.9300C18—H18B0.9600
C6—C71.384 (3)C18—H18C0.9600
C6—H60.9300O19—C201.422 (3)
C7—O191.364 (2)C20—H20A0.9600
C7—C81.370 (3)C20—H20B0.9600
C8—C131.400 (3)C20—H20C0.9600
C8—H80.9300
C2—C1—C11121.9 (2)C12—C11—C9120.9 (2)
C2—C1—H1119.1C1—C11—C9121.22 (19)
C11—C1—H1119.1O10—C12—C11122.33 (19)
C1—C2—C3118.4 (2)O10—C12—C4116.0 (2)
C1—C2—C15122.2 (2)C11—C12—C4121.6 (2)
C3—C2—C15119.4 (2)C14—C13—C8119.0 (2)
C4—C3—C2121.0 (2)C14—C13—C9120.5 (2)
C4—C3—H3119.5C8—C13—C9120.44 (19)
C2—C3—H3119.5C13—C14—C5121.0 (2)
C3—C4—C12119.2 (2)C13—C14—O10122.5 (2)
C3—C4—H4120.4C5—C14—O10116.5 (2)
C12—C4—H4120.4O16—C15—O17123.1 (2)
C6—C5—C14119.2 (2)O16—C15—C2124.7 (2)
C6—C5—H5120.4O17—C15—C2112.2 (2)
C14—C5—H5120.4C15—O17—C18116.59 (19)
C5—C6—C7121.0 (2)O17—C18—H18A109.5
C5—C6—H6119.5O17—C18—H18B109.5
C7—C6—H6119.5H18A—C18—H18B109.5
O19—C7—C8125.1 (2)O17—C18—H18C109.5
O19—C7—C6115.3 (2)H18A—C18—H18C109.5
C8—C7—C6119.6 (2)H18B—C18—H18C109.5
C7—C8—C13120.2 (2)C7—O19—C20117.16 (17)
C7—C8—H8119.9O19—C20—H20A109.5
C13—C8—H8119.9O19—C20—H20B109.5
O21—C9—C13122.78 (19)H20A—C20—H20B109.5
O21—C9—C11122.5 (2)O19—C20—H20C109.5
C13—C9—C11114.73 (19)H20A—C20—H20C109.5
C12—O10—C14118.97 (16)H20B—C20—H20C109.5
C12—C11—C1117.8 (2)
C11—C1—C2—C30.3 (3)C3—C4—C12—C11−0.1 (4)
C11—C1—C2—C15−178.91 (19)C7—C8—C13—C14−0.3 (3)
C1—C2—C3—C4−0.6 (3)C7—C8—C13—C9−179.76 (19)
C15—C2—C3—C4178.6 (2)O21—C9—C13—C14178.94 (19)
C2—C3—C4—C120.6 (4)C11—C9—C13—C14−0.7 (3)
C14—C5—C6—C7−0.2 (4)O21—C9—C13—C8−1.6 (3)
C5—C6—C7—O19−179.7 (2)C11—C9—C13—C8178.67 (18)
C5—C6—C7—C80.2 (4)C8—C13—C14—C50.3 (3)
O19—C7—C8—C13−179.99 (19)C9—C13—C14—C5179.7 (2)
C6—C7—C8—C130.1 (3)C8—C13—C14—O10−179.42 (18)
C2—C1—C11—C120.1 (3)C9—C13—C14—O100.0 (3)
C2—C1—C11—C9−179.66 (19)C6—C5—C14—C13−0.1 (4)
O21—C9—C11—C12−179.0 (2)C6—C5—C14—O10179.7 (2)
C13—C9—C11—C120.7 (3)C12—O10—C14—C130.8 (3)
O21—C9—C11—C10.8 (3)C12—O10—C14—C5−178.9 (2)
C13—C9—C11—C1−179.53 (17)C1—C2—C15—O16177.5 (2)
C14—O10—C12—C11−0.8 (3)C3—C2—C15—O16−1.7 (4)
C14—O10—C12—C4179.6 (2)C1—C2—C15—O17−3.8 (3)
C1—C11—C12—O10−179.70 (17)C3—C2—C15—O17177.05 (19)
C9—C11—C12—O100.1 (3)O16—C15—O17—C18−0.8 (3)
C1—C11—C12—C4−0.2 (3)C2—C15—O17—C18−179.59 (18)
C9—C11—C12—C4179.6 (2)C8—C7—O19—C20−0.2 (3)
C3—C4—C12—O10179.4 (2)C6—C7—O19—C20179.7 (2)
D—H···AD—HH···AD···AD—H···A
C3—H3···O16i0.932.543.362 (3)147
C20—H20A···O21ii0.962.503.454 (3)173
CgICgJCg···CgDihedral angleInterplanar distanceOffset
ACiii3.549 (1)0.83.420 (1)1.068 (1)
BAiii3.583 (1)0.13.454 (1)0.953 (1)
BCiii3.772 (1)0.83.455 (1)1.525 (1)
XIJI···JX···JX-I···J
C15O16CgBiii3.564 (2)3.689 (2)86.4 (1)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C3—H3⋯O16i0.932.543.362 (3)147
C20—H20A⋯O21ii0.962.503.454 (3)173

Symmetry codes: (i) ; (ii) .

Table 2

π–π interactions (Å,°)

CgICgJCgCgDihedral angleInterplanar distanceOffset
ACiii3.549 (1)0.83.420 (1)1.068 (1)
BAiii3.583 (1)0.13.454 (1)0.953 (1)
BCiii3.772 (1)0.83.455 (1)1.525 (1)

Symmetry code: (iii) . CgA, CgB and CgC are the centroids of the C9/O10/C11–C14, C1–C4/C12/C11 and C5–C8/C13/C14 rings, respectively. The dihedral angle is that between the planes of the rings CgI and CgJ. The interplanar distance is the perpendicular distance of CgI from ring J. The offset is the perpendicular distance of ring I from ring J.

Table 3

C—O⋯π interactions (Å,°)

XIJIJXJXIJ
C15O16CgBiii3.564 (2)3.689 (2)86.4 (1)

Symmetry code: (iii) . CgB is the centroid of the C1–C4/C12/C11 ring.

  12 in total

1.  Chemical constituents of Garcinia fusca: structure elucidation of eight new xanthones and their cancer chemopreventive activity.

Authors:  Chihiro Ito; Masataka Itoigawa; Tomoko Takakura; Nijisiri Ruangrungsi; Fumio Enjo; Harukuni Tokuda; Hoyoku Nishino; Hiroshi Furukawa
Journal:  J Nat Prod       Date:  2003-02       Impact factor: 4.050

2.  Evaluation of the antifungal activity of natural xanthones from Garcinia mangostana and their synthetic derivatives.

Authors:  G Gopalakrishnan; B Banumathi; G Suresh
Journal:  J Nat Prod       Date:  1997-05       Impact factor: 4.050

3.  Antimicrobial activity of isoprenoid-substituted xanthones from Cudrania cochinchinensis against vancomycin-resistant enterococci.

Authors:  T Fukai; Y Oku; A J Hou; M Yonekawa; S Terada
Journal:  Phytomedicine       Date:  2005-06       Impact factor: 5.340

4.  Xanthone-2-carboxylic acids, a new series of antiallergic substances.

Authors:  J R Pfister; R W Ferraresi; I T Harrison; W H Rooks; A P Roszkowski; A Van Horn; J H Fried
Journal:  J Med Chem       Date:  1972-10       Impact factor: 7.446

5.  Synthesis and aldose reductase inhibitory activity of 7-sulfamoylxanthone-2-carboxylic acids.

Authors:  J R Pfister; W E Wymann; J M Mahoney; L D Waterbury
Journal:  J Med Chem       Date:  1980-11       Impact factor: 7.446

6.  Phytotoxic naphthopyranone derivatives from the coprophilous fungus Guanomyces polythrix.

Authors:  M Macías; A Gamboa; M Ulloa; R A Toscano; R Mata
Journal:  Phytochemistry       Date:  2001-11       Impact factor: 4.072

7.  Xanthones as antimalarial agents: stage specificity.

Authors:  M V Ignatushchenko; R W Winter; M Riscoe
Journal:  Am J Trop Med Hyg       Date:  2000-01       Impact factor: 2.345

8.  Experimental electron density study of the supramolecular aggregation between 4,4'-dipyridyl-N,N'-dioxide and 1,4-diiodotetrafluorobenzene at 90 K.

Authors:  Riccardo Bianchi; Alessandra Forni; Tullio Pilati
Journal:  Acta Crystallogr B       Date:  2004-09-15

9.  Carbonyl-carbonyl, carbonyl-pi and carbonyl-halogen dipolar interactions as the directing motifs of the supramolecular structure of ethyl 6-chloro-2-oxo-2H-chromene-3-carboxylate and ethyl 6-bromo-2-oxo-2H-chromene-3-carboxylate.

Authors:  Rocio J Santos-Contreras; Francisco J Martínez-Martínez; Efrén V García-Báez; Itzia I Padilla-Martínez; Ana L Peraza; Herbert Höpfl
Journal:  Acta Crystallogr C       Date:  2007-03-17       Impact factor: 1.172

10.  Xanthonolol: a calcium channel and beta-adrenoceptor blocker with vasodilating properties.

Authors:  I J Chen; S J Liou; S S Liou; C N Lin
Journal:  Gen Pharmacol       Date:  1993-11
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