| Literature DB >> 21582153 |
Paweł Niedziałkowski1, Tadeusz Ossowski, Artur Sikorski.
Abstract
The crystal structure of the title compound, C(16)H(12)O(5), is stabilized by C-H⋯O hydrogen bonds and C=O⋯π inter-actions; π-π inter-actions are also present. With respective average deviations from planarity of 0.003 (2) and 0.002 (1) Å, the xanthone and ester fragments are oriented at an angle of 2.8 (2)° with respect to each other. The mean planes of the xanthone skeleton lie either parallel to each other or are inclined at an angle of 85.5 (2)° in the crystal structure.Entities:
Year: 2009 PMID: 21582153 PMCID: PMC2968451 DOI: 10.1107/S1600536809003602
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C16H12O5 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 2126 reflections |
| θ = 3.0–25.0° | |
| µ = 0.11 mm−1 | |
| β = 93.266 (7)° | Needle, white |
| 0.2 × 0.04 × 0.04 mm | |
| Oxford Diffraction Ruby CCD diffractometer | 2366 independent reflections |
| Radiation source: Enhance (Mo) X-ray Source | 1051 reflections with |
| graphite | |
| Detector resolution: 10.4002 pixels mm-1 | θmax = 25.0°, θmin = 3.0° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 23842 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 2366 reflections | (Δ/σ)max = 0.001 |
| 193 parameters | Δρmax = 0.13 e Å−3 |
| 0 restraints | Δρmin = −0.13 e Å−3 |
| Experimental. CrysAlis RED, Version 1.171.32.15 (Oxford Diffraction Ltd., 2008) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm. |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | 0.4869 (4) | 0.3741 (2) | 0.37390 (8) | 0.0507 (6) | |
| H1 | 0.4950 | 0.4005 | 0.3409 | 0.061* | |
| C2 | 0.6568 (4) | 0.4321 (2) | 0.41017 (8) | 0.0531 (6) | |
| C3 | 0.6434 (5) | 0.3912 (2) | 0.45962 (9) | 0.0678 (7) | |
| H3 | 0.7584 | 0.4289 | 0.4846 | 0.081* | |
| C4 | 0.4634 (5) | 0.2964 (3) | 0.47187 (9) | 0.0735 (7) | |
| H4 | 0.4548 | 0.2703 | 0.5049 | 0.088* | |
| C5 | −0.2272 (5) | −0.0083 (2) | 0.43087 (9) | 0.0742 (7) | |
| H5 | −0.2221 | −0.0287 | 0.4647 | 0.089* | |
| C6 | −0.4064 (5) | −0.0705 (2) | 0.39752 (9) | 0.0723 (7) | |
| H6 | −0.5229 | −0.1337 | 0.4089 | 0.087* | |
| C7 | −0.4169 (4) | −0.0408 (2) | 0.34712 (9) | 0.0570 (6) | |
| C8 | −0.2448 (4) | 0.0520 (2) | 0.33022 (8) | 0.0506 (6) | |
| H8 | −0.2514 | 0.0723 | 0.2964 | 0.061* | |
| C9 | 0.1240 (4) | 0.2157 (2) | 0.34601 (8) | 0.0485 (5) | |
| O10 | 0.1221 (3) | 0.14529 (15) | 0.44927 (5) | 0.0685 (5) | |
| C11 | 0.3026 (4) | 0.2770 (2) | 0.38514 (7) | 0.0469 (5) | |
| C12 | 0.2945 (4) | 0.2399 (2) | 0.43445 (8) | 0.0567 (6) | |
| C13 | −0.0592 (4) | 0.1163 (2) | 0.36375 (7) | 0.0459 (5) | |
| C14 | −0.0538 (4) | 0.0853 (2) | 0.41369 (8) | 0.0567 (6) | |
| C15 | 0.8493 (5) | 0.5368 (2) | 0.39863 (10) | 0.0616 (6) | |
| O16 | 0.9949 (4) | 0.59309 (17) | 0.42912 (7) | 0.0897 (6) | |
| O17 | 0.8478 (3) | 0.56064 (15) | 0.34987 (6) | 0.0748 (5) | |
| C18 | 1.0307 (5) | 0.6610 (2) | 0.33454 (10) | 0.0877 (8) | |
| H18A | 0.9931 | 0.6783 | 0.2996 | 0.132* | |
| H18B | 1.2228 | 0.6352 | 0.3403 | 0.132* | |
| H18C | 0.9978 | 0.7362 | 0.3536 | 0.132* | |
| O19 | −0.6050 (3) | −0.10926 (15) | 0.31785 (6) | 0.0734 (5) | |
| C20 | −0.6235 (5) | −0.0814 (3) | 0.26581 (9) | 0.0837 (8) | |
| H20A | −0.7623 | −0.1351 | 0.2493 | 0.126* | |
| H20B | −0.4446 | −0.0962 | 0.2522 | 0.126* | |
| H20C | −0.6760 | 0.0058 | 0.2609 | 0.126* | |
| O21 | 0.1291 (3) | 0.24526 (14) | 0.30176 (5) | 0.0657 (5) |
| C1 | 0.0541 (13) | 0.0547 (16) | 0.0427 (13) | 0.0009 (12) | −0.0024 (11) | −0.0013 (11) |
| C2 | 0.0517 (13) | 0.0553 (16) | 0.0518 (15) | −0.0049 (11) | −0.0025 (11) | −0.0058 (12) |
| C3 | 0.0741 (15) | 0.0794 (19) | 0.0481 (16) | −0.0117 (14) | −0.0139 (11) | −0.0116 (14) |
| C4 | 0.0851 (17) | 0.087 (2) | 0.0471 (14) | −0.0246 (16) | −0.0071 (13) | 0.0017 (14) |
| C5 | 0.0855 (16) | 0.084 (2) | 0.0519 (15) | −0.0292 (15) | −0.0047 (13) | 0.0166 (14) |
| C6 | 0.0777 (16) | 0.0703 (19) | 0.0681 (19) | −0.0229 (14) | −0.0016 (14) | 0.0133 (15) |
| C7 | 0.0565 (13) | 0.0599 (16) | 0.0535 (15) | −0.0049 (13) | −0.0053 (11) | 0.0004 (13) |
| C8 | 0.0532 (12) | 0.0517 (15) | 0.0464 (13) | −0.0031 (11) | −0.0022 (11) | −0.0001 (11) |
| C9 | 0.0491 (13) | 0.0508 (15) | 0.0449 (14) | 0.0006 (11) | −0.0036 (11) | 0.0031 (12) |
| O10 | 0.0800 (10) | 0.0808 (13) | 0.0429 (9) | −0.0254 (9) | −0.0104 (8) | 0.0102 (8) |
| C11 | 0.0475 (12) | 0.0498 (15) | 0.0427 (13) | −0.0023 (11) | −0.0027 (10) | 0.0012 (11) |
| C12 | 0.0584 (13) | 0.0629 (17) | 0.0476 (14) | −0.0139 (13) | −0.0063 (11) | 0.0007 (12) |
| C13 | 0.0470 (12) | 0.0466 (14) | 0.0436 (14) | 0.0005 (11) | −0.0022 (10) | 0.0020 (11) |
| C14 | 0.0617 (14) | 0.0596 (17) | 0.0473 (15) | −0.0124 (12) | −0.0087 (11) | 0.0037 (12) |
| C15 | 0.0620 (15) | 0.0620 (18) | 0.0598 (17) | −0.0037 (13) | −0.0044 (12) | −0.0063 (15) |
| O16 | 0.1020 (13) | 0.0906 (14) | 0.0742 (12) | −0.0367 (11) | −0.0143 (10) | −0.0106 (11) |
| O17 | 0.0865 (11) | 0.0729 (13) | 0.0641 (12) | −0.0294 (10) | −0.0039 (9) | 0.0052 (9) |
| C18 | 0.0935 (18) | 0.078 (2) | 0.092 (2) | −0.0274 (16) | 0.0074 (15) | 0.0129 (16) |
| O19 | 0.0772 (10) | 0.0744 (12) | 0.0671 (12) | −0.0265 (9) | −0.0081 (8) | −0.0049 (9) |
| C20 | 0.0931 (18) | 0.102 (2) | 0.0549 (17) | −0.0282 (16) | −0.0058 (13) | −0.0135 (15) |
| O21 | 0.0744 (10) | 0.0781 (12) | 0.0432 (9) | −0.0200 (8) | −0.0084 (7) | 0.0105 (8) |
| C1—C2 | 1.373 (3) | C9—O21 | 1.227 (2) |
| C1—C11 | 1.394 (3) | C9—C13 | 1.461 (3) |
| C1—H1 | 0.9300 | C9—C11 | 1.462 (3) |
| C2—C3 | 1.398 (3) | O10—C12 | 1.366 (2) |
| C2—C15 | 1.480 (3) | O10—C14 | 1.386 (2) |
| C3—C4 | 1.369 (3) | C11—C12 | 1.380 (3) |
| C3—H3 | 0.9300 | C13—C14 | 1.376 (3) |
| C4—C12 | 1.384 (3) | C15—O16 | 1.199 (2) |
| C4—H4 | 0.9300 | C15—O17 | 1.330 (3) |
| C5—C6 | 1.368 (3) | O17—C18 | 1.446 (3) |
| C5—C14 | 1.383 (3) | C18—H18A | 0.9600 |
| C5—H5 | 0.9300 | C18—H18B | 0.9600 |
| C6—C7 | 1.384 (3) | C18—H18C | 0.9600 |
| C6—H6 | 0.9300 | O19—C20 | 1.422 (3) |
| C7—O19 | 1.364 (2) | C20—H20A | 0.9600 |
| C7—C8 | 1.370 (3) | C20—H20B | 0.9600 |
| C8—C13 | 1.400 (3) | C20—H20C | 0.9600 |
| C8—H8 | 0.9300 | ||
| C2—C1—C11 | 121.9 (2) | C12—C11—C9 | 120.9 (2) |
| C2—C1—H1 | 119.1 | C1—C11—C9 | 121.22 (19) |
| C11—C1—H1 | 119.1 | O10—C12—C11 | 122.33 (19) |
| C1—C2—C3 | 118.4 (2) | O10—C12—C4 | 116.0 (2) |
| C1—C2—C15 | 122.2 (2) | C11—C12—C4 | 121.6 (2) |
| C3—C2—C15 | 119.4 (2) | C14—C13—C8 | 119.0 (2) |
| C4—C3—C2 | 121.0 (2) | C14—C13—C9 | 120.5 (2) |
| C4—C3—H3 | 119.5 | C8—C13—C9 | 120.44 (19) |
| C2—C3—H3 | 119.5 | C13—C14—C5 | 121.0 (2) |
| C3—C4—C12 | 119.2 (2) | C13—C14—O10 | 122.5 (2) |
| C3—C4—H4 | 120.4 | C5—C14—O10 | 116.5 (2) |
| C12—C4—H4 | 120.4 | O16—C15—O17 | 123.1 (2) |
| C6—C5—C14 | 119.2 (2) | O16—C15—C2 | 124.7 (2) |
| C6—C5—H5 | 120.4 | O17—C15—C2 | 112.2 (2) |
| C14—C5—H5 | 120.4 | C15—O17—C18 | 116.59 (19) |
| C5—C6—C7 | 121.0 (2) | O17—C18—H18A | 109.5 |
| C5—C6—H6 | 119.5 | O17—C18—H18B | 109.5 |
| C7—C6—H6 | 119.5 | H18A—C18—H18B | 109.5 |
| O19—C7—C8 | 125.1 (2) | O17—C18—H18C | 109.5 |
| O19—C7—C6 | 115.3 (2) | H18A—C18—H18C | 109.5 |
| C8—C7—C6 | 119.6 (2) | H18B—C18—H18C | 109.5 |
| C7—C8—C13 | 120.2 (2) | C7—O19—C20 | 117.16 (17) |
| C7—C8—H8 | 119.9 | O19—C20—H20A | 109.5 |
| C13—C8—H8 | 119.9 | O19—C20—H20B | 109.5 |
| O21—C9—C13 | 122.78 (19) | H20A—C20—H20B | 109.5 |
| O21—C9—C11 | 122.5 (2) | O19—C20—H20C | 109.5 |
| C13—C9—C11 | 114.73 (19) | H20A—C20—H20C | 109.5 |
| C12—O10—C14 | 118.97 (16) | H20B—C20—H20C | 109.5 |
| C12—C11—C1 | 117.8 (2) | ||
| C11—C1—C2—C3 | 0.3 (3) | C3—C4—C12—C11 | −0.1 (4) |
| C11—C1—C2—C15 | −178.91 (19) | C7—C8—C13—C14 | −0.3 (3) |
| C1—C2—C3—C4 | −0.6 (3) | C7—C8—C13—C9 | −179.76 (19) |
| C15—C2—C3—C4 | 178.6 (2) | O21—C9—C13—C14 | 178.94 (19) |
| C2—C3—C4—C12 | 0.6 (4) | C11—C9—C13—C14 | −0.7 (3) |
| C14—C5—C6—C7 | −0.2 (4) | O21—C9—C13—C8 | −1.6 (3) |
| C5—C6—C7—O19 | −179.7 (2) | C11—C9—C13—C8 | 178.67 (18) |
| C5—C6—C7—C8 | 0.2 (4) | C8—C13—C14—C5 | 0.3 (3) |
| O19—C7—C8—C13 | −179.99 (19) | C9—C13—C14—C5 | 179.7 (2) |
| C6—C7—C8—C13 | 0.1 (3) | C8—C13—C14—O10 | −179.42 (18) |
| C2—C1—C11—C12 | 0.1 (3) | C9—C13—C14—O10 | 0.0 (3) |
| C2—C1—C11—C9 | −179.66 (19) | C6—C5—C14—C13 | −0.1 (4) |
| O21—C9—C11—C12 | −179.0 (2) | C6—C5—C14—O10 | 179.7 (2) |
| C13—C9—C11—C12 | 0.7 (3) | C12—O10—C14—C13 | 0.8 (3) |
| O21—C9—C11—C1 | 0.8 (3) | C12—O10—C14—C5 | −178.9 (2) |
| C13—C9—C11—C1 | −179.53 (17) | C1—C2—C15—O16 | 177.5 (2) |
| C14—O10—C12—C11 | −0.8 (3) | C3—C2—C15—O16 | −1.7 (4) |
| C14—O10—C12—C4 | 179.6 (2) | C1—C2—C15—O17 | −3.8 (3) |
| C1—C11—C12—O10 | −179.70 (17) | C3—C2—C15—O17 | 177.05 (19) |
| C9—C11—C12—O10 | 0.1 (3) | O16—C15—O17—C18 | −0.8 (3) |
| C1—C11—C12—C4 | −0.2 (3) | C2—C15—O17—C18 | −179.59 (18) |
| C9—C11—C12—C4 | 179.6 (2) | C8—C7—O19—C20 | −0.2 (3) |
| C3—C4—C12—O10 | 179.4 (2) | C6—C7—O19—C20 | 179.7 (2) |
| H··· | ||||
| C3—H3···O16i | 0.93 | 2.54 | 3.362 (3) | 147 |
| C20—H20A···O21ii | 0.96 | 2.50 | 3.454 (3) | 173 |
| CgI | CgJ | Cg···Cg | Dihedral angle | Interplanar distance | Offset |
| A | Ciii | 3.549 (1) | 0.8 | 3.420 (1) | 1.068 (1) |
| B | Aiii | 3.583 (1) | 0.1 | 3.454 (1) | 0.953 (1) |
| B | Ciii | 3.772 (1) | 0.8 | 3.455 (1) | 1.525 (1) |
| X | I | J | I···J | X···J | X-I···J |
| C15 | O16 | CgBiii | 3.564 (2) | 3.689 (2) | 86.4 (1) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| C3—H3⋯O16i | 0.93 | 2.54 | 3.362 (3) | 147 |
| C20—H20 | 0.96 | 2.50 | 3.454 (3) | 173 |
Symmetry codes: (i) ; (ii) .
π–π interactions (Å,°)
| Dihedral angle | Interplanar distance | Offset | |||
|---|---|---|---|---|---|
| 3.549 (1) | 0.8 | 3.420 (1) | 1.068 (1) | ||
| 3.583 (1) | 0.1 | 3.454 (1) | 0.953 (1) | ||
| 3.772 (1) | 0.8 | 3.455 (1) | 1.525 (1) |
Symmetry code: (iii) . CgA, CgB and CgC are the centroids of the C9/O10/C11–C14, C1–C4/C12/C11 and C5–C8/C13/C14 rings, respectively. The dihedral angle is that between the planes of the rings CgI and CgJ. The interplanar distance is the perpendicular distance of CgI from ring J. The offset is the perpendicular distance of ring I from ring J.
C—O⋯π interactions (Å,°)
| C15 | O16 | 3.564 (2) | 3.689 (2) | 86.4 (1) |
Symmetry code: (iii) . CgB is the centroid of the C1–C4/C12/C11 ring.