Literature DB >> 21582139

3-Benzyl-5-butyl-1,3,5-thia-diazinane-2-thione.

Mohammad Arfan, M Nawaz Tahir, Muhammad Ishaq Ali Shah, Mohammad S Iqbal.   

Abstract

In the title compound, C(14)H(20)N(2)S(2), the 1,3,5-thia-diazinane-2-thione ring adopts an envelope conformation. The S=C bond length is 1.6776 (15) Å, whereas the S-C bond lengths are 1.7470 (15) and 1.8479 (17) Å. The intramolecular C-H⋯S hydrogen bond between the thione and the benzyl units along with the C-H⋯π interaction between the butyl group and the centroid of the benzene ring may be effective in stabilizing the molecule.

Entities:  

Year:  2009        PMID: 21582139      PMCID: PMC2968617          DOI: 10.1107/S1600536809003882

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of the 1,3,5-thia­diazinane-2-thione nucleus, see: Aboul-fadi et al. (2002 ▶); Ertan et al. (1991 ▶, 1996 ▶). For its biological activity, see: Coro et al. (2005 ▶). For a related structure, see: Perez et al. (2001 ▶). For bond-length data, see: Allen (2002 ▶);

Experimental

Crystal data

C14H20N2S2 M = 280.44 Triclinic, a = 7.6559 (2) Å b = 9.9586 (3) Å c = 11.1531 (4) Å α = 66.917 (2)° β = 70.649 (1)° γ = 76.076 (2)° V = 732.03 (4) Å3 Z = 2 Mo Kα radiation μ = 0.35 mm−1 T = 296 (2) K 0.26 × 0.20 × 0.18 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.922, T max = 0.942 15790 measured reflections 3759 independent reflections 2990 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.100 S = 1.03 3759 reflections 163 parameters H-atom parameters constrained Δρmax = 0.22 e Å−3 Δρmin = −0.20 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: APEX2; data reduction: SAINT (Bruker, 2007 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2003 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON (Spek, 2003 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809003882/at2719sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809003882/at2719Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H20N2S2Z = 2
Mr = 280.44F(000) = 300
Triclinic, P1Dx = 1.272 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.6559 (2) ÅCell parameters from 2990 reflections
b = 9.9586 (3) Åθ = 2.1–28.7°
c = 11.1531 (4) ŵ = 0.35 mm1
α = 66.917 (2)°T = 296 K
β = 70.649 (1)°Prismatic, colourless
γ = 76.076 (2)°0.26 × 0.20 × 0.18 mm
V = 732.03 (4) Å3
Bruker Kappa APEXII CCD diffractometer3759 independent reflections
Radiation source: fine-focus sealed tube2990 reflections with I > 2σ(I)
graphiteRint = 0.025
Detector resolution: 7.40 pixels mm-1θmax = 28.7°, θmin = 2.1°
ω scansh = −10→10
Absorption correction: multi-scan (SADABS; Bruker, 2005)k = −12→13
Tmin = 0.922, Tmax = 0.942l = −15→14
15790 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.035Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.100H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0507P)2 + 0.1133P] where P = (Fo2 + 2Fc2)/3
3759 reflections(Δ/σ)max < 0.001
163 parametersΔρmax = 0.22 e Å3
0 restraintsΔρmin = −0.20 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.37143 (5)0.10537 (5)0.24801 (4)0.0559 (1)
S20.72763 (5)0.05293 (4)0.29926 (4)0.0542 (1)
N10.44875 (14)0.24375 (12)0.38422 (10)0.0392 (3)
N20.76229 (15)0.27317 (13)0.37678 (11)0.0446 (3)
C10.25768 (16)0.48352 (15)0.31596 (13)0.0404 (4)
C20.20907 (19)0.59310 (17)0.37238 (15)0.0501 (5)
C30.2155 (3)0.73893 (19)0.2912 (2)0.0663 (6)
C40.2704 (3)0.7760 (2)0.1528 (2)0.0733 (7)
C50.3168 (3)0.6681 (2)0.09567 (17)0.0680 (6)
C60.3104 (2)0.52245 (18)0.17638 (15)0.0525 (5)
C70.25828 (17)0.32402 (15)0.40427 (14)0.0447 (4)
C80.50163 (17)0.14720 (14)0.32035 (13)0.0408 (3)
C90.8377 (2)0.12518 (17)0.38223 (16)0.0541 (5)
C100.56811 (17)0.27834 (16)0.44744 (13)0.0431 (4)
C110.80744 (19)0.38248 (16)0.24024 (13)0.0449 (4)
C120.7732 (2)0.53983 (16)0.23571 (14)0.0488 (4)
C130.8309 (2)0.64508 (17)0.09273 (15)0.0560 (5)
C140.8034 (3)0.8041 (2)0.0821 (2)0.0821 (7)
H20.171730.568290.465890.0601*
H30.182750.811930.329930.0796*
H40.276030.874100.097820.0878*
H50.352700.693500.002100.0817*
H60.341430.450000.137120.0630*
H7A0.208280.317020.498310.0537*
H7B0.178440.278960.383140.0537*
H9A0.821250.062140.476070.0649*
H9B0.970690.121610.338910.0649*
H10A0.522720.375970.453080.0516*
H10B0.554800.209120.538980.0516*
H11A0.733750.373220.188580.0538*
H11B0.937880.360040.196400.0538*
H12A0.842920.549590.289690.0586*
H12B0.641620.565200.274720.0586*
H13A0.961610.617170.053630.0672*
H13B0.759500.635400.039770.0672*
H14A0.842860.86437−0.011090.1232*
H14B0.876060.815410.132280.1232*
H14C0.673800.833700.118280.1232*
U11U22U33U12U13U23
S10.0586 (2)0.0591 (2)0.0578 (2)−0.0195 (2)−0.0143 (2)−0.0221 (2)
S20.0483 (2)0.0444 (2)0.0635 (3)0.0008 (1)−0.0102 (2)−0.0197 (2)
N10.0350 (5)0.0416 (6)0.0381 (6)−0.0065 (4)−0.0072 (4)−0.0118 (5)
N20.0389 (5)0.0526 (7)0.0390 (6)−0.0087 (5)−0.0112 (4)−0.0100 (5)
C10.0315 (5)0.0469 (7)0.0422 (7)−0.0041 (5)−0.0099 (5)−0.0150 (6)
C20.0469 (7)0.0558 (9)0.0505 (8)−0.0020 (6)−0.0139 (6)−0.0230 (7)
C30.0691 (10)0.0496 (9)0.0874 (13)0.0017 (7)−0.0303 (9)−0.0284 (9)
C40.0758 (11)0.0464 (9)0.0843 (14)−0.0061 (8)−0.0335 (10)0.0005 (9)
C50.0694 (10)0.0707 (11)0.0470 (9)−0.0072 (8)−0.0176 (8)−0.0018 (8)
C60.0538 (8)0.0582 (9)0.0446 (8)−0.0032 (6)−0.0131 (6)−0.0189 (7)
C70.0341 (6)0.0493 (8)0.0443 (7)−0.0075 (5)−0.0021 (5)−0.0148 (6)
C80.0415 (6)0.0372 (6)0.0365 (6)−0.0109 (5)−0.0062 (5)−0.0052 (5)
C90.0422 (7)0.0555 (9)0.0545 (8)−0.0025 (6)−0.0164 (6)−0.0076 (7)
C100.0434 (6)0.0513 (8)0.0331 (6)−0.0106 (5)−0.0087 (5)−0.0115 (6)
C110.0448 (6)0.0506 (8)0.0380 (7)−0.0121 (5)−0.0067 (5)−0.0139 (6)
C120.0507 (7)0.0533 (8)0.0435 (8)−0.0120 (6)−0.0096 (6)−0.0169 (6)
C130.0636 (9)0.0532 (9)0.0485 (8)−0.0137 (7)−0.0140 (7)−0.0116 (7)
C140.0893 (13)0.0532 (10)0.0946 (15)−0.0123 (9)−0.0219 (11)−0.0158 (10)
S1—C81.6776 (15)C3—H30.9300
S2—C81.7470 (15)C4—H40.9300
S2—C91.8479 (17)C5—H50.9300
N1—C71.4760 (19)C6—H60.9300
N1—C81.3246 (18)C7—H7A0.9700
N1—C101.4899 (18)C7—H7B0.9700
N2—C91.433 (2)C9—H9A0.9700
N2—C101.4326 (19)C9—H9B0.9700
N2—C111.4683 (18)C10—H10A0.9700
C1—C21.383 (2)C10—H10B0.9700
C1—C61.387 (2)C11—H11A0.9700
C1—C71.505 (2)C11—H11B0.9700
C2—C31.380 (3)C12—H12A0.9700
C3—C41.376 (3)C12—H12B0.9700
C4—C51.375 (3)C13—H13A0.9700
C5—C61.378 (3)C13—H13B0.9700
C11—C121.509 (2)C14—H14A0.9600
C12—C131.511 (2)C14—H14B0.9600
C13—C141.508 (3)C14—H14C0.9600
C2—H20.9300
S1···H63.1400H9A···S1iii2.9300
S1···H7B2.6000H9B···S1vi2.8800
S1···H9Bi2.8800H9B···H11B2.2900
S1···H5ii3.1600H10A···C12.7100
S1···H9Aiii2.9300H10A···C22.9400
S1···H10Biii3.1600H10A···C122.7500
S2···H11A2.9400H10A···H7A2.4600
N1···H11A2.6800H10A···H12B2.2400
C6···C83.593 (2)H10B···H9A2.2800
C8···C113.374 (2)H10B···S1iii3.1600
C8···C63.593 (2)H11A···S22.9400
C11···C83.374 (2)H11A···N12.6800
C1···H12B3.0800H11A···C82.8300
C1···H10A2.7100H11A···H13B2.5000
C2···H10A2.9400H11B···H9B2.2900
C4···H14Bi3.0200H11B···H13A2.4400
C5···H13Ai3.0900H11B···H13Avii2.5700
C8···H11A2.8300H12A···H14B2.5600
C10···H12B2.8200H12A···H2v2.4800
C12···H10A2.7500H12B···C13.0800
C14···H4iv3.0800H12B···C102.8200
H2···H7A2.3400H12B···H10A2.2400
H2···H12Av2.4800H12B···H14C2.5700
H4···C14iv3.0800H13A···C5vi3.0900
H4···H14Aiv2.4500H13A···H11B2.4400
H5···S1ii3.1600H13A···H11Bvii2.5700
H6···S13.1400H13B···H11A2.5000
H7A···H22.3400H14A···H4iv2.4500
H7A···H10A2.4600H14B···C4vi3.0200
H7B···S12.6000H14B···H12A2.5600
H9A···H10B2.2800H14C···H12B2.5700
C8—S2—C9103.11 (7)N1—C7—H7B109.00
C7—N1—C8122.01 (12)C1—C7—H7A109.00
C7—N1—C10113.20 (11)C1—C7—H7B109.00
C8—N1—C10124.74 (12)H7A—C7—H7B108.00
C9—N2—C10109.50 (12)S2—C9—H9A109.00
C9—N2—C11113.75 (12)S2—C9—H9B109.00
C10—N2—C11115.24 (12)N2—C9—H9A109.00
C2—C1—C6119.00 (14)N2—C9—H9B109.00
C2—C1—C7120.70 (12)H9A—C9—H9B108.00
C6—C1—C7120.29 (14)N1—C10—H10A109.00
C1—C2—C3120.62 (15)N1—C10—H10B109.00
C2—C3—C4119.82 (18)N2—C10—H10A109.00
C3—C4—C5120.03 (18)N2—C10—H10B109.00
C4—C5—C6120.31 (16)H10A—C10—H10B108.00
C1—C6—C5120.21 (16)N2—C11—H11A109.00
N1—C7—C1111.22 (11)N2—C11—H11B109.00
S1—C8—S2112.92 (8)C12—C11—H11A109.00
S1—C8—N1126.10 (11)C12—C11—H11B109.00
S2—C8—N1120.94 (11)H11A—C11—H11B108.00
S2—C9—N2113.13 (11)C11—C12—H12A109.00
N1—C10—N2114.50 (11)C11—C12—H12B109.00
N2—C11—C12114.63 (12)C13—C12—H12A109.00
C11—C12—C13111.58 (12)C13—C12—H12B109.00
C12—C13—C14113.99 (14)H12A—C12—H12B108.00
C1—C2—H2120.00C12—C13—H13A109.00
C3—C2—H2120.00C12—C13—H13B109.00
C2—C3—H3120.00C14—C13—H13A109.00
C4—C3—H3120.00C14—C13—H13B109.00
C3—C4—H4120.00H13A—C13—H13B108.00
C5—C4—H4120.00C13—C14—H14A109.00
C4—C5—H5120.00C13—C14—H14B109.00
C6—C5—H5120.00C13—C14—H14C109.00
C1—C6—H6120.00H14A—C14—H14B109.00
C5—C6—H6120.00H14A—C14—H14C109.00
N1—C7—H7A109.00H14B—C14—H14C109.00
C9—S2—C8—S1178.01 (8)C9—N2—C11—C12−165.23 (13)
C9—S2—C8—N1−0.05 (12)C10—N2—C11—C1267.14 (17)
C8—S2—C9—N2−29.53 (12)C6—C1—C2—C3−1.0 (2)
C8—N1—C7—C1−108.21 (14)C7—C1—C2—C3177.50 (17)
C10—N1—C7—C174.18 (14)C2—C1—C6—C51.0 (2)
C7—N1—C8—S12.68 (19)C7—C1—C6—C5−177.45 (17)
C7—N1—C8—S2−179.54 (10)C2—C1—C7—N1−114.76 (15)
C10—N1—C8—S1−180.00 (10)C6—C1—C7—N163.68 (17)
C10—N1—C8—S2−2.21 (18)C1—C2—C3—C40.1 (3)
C7—N1—C10—N2−147.79 (12)C2—C3—C4—C50.7 (4)
C8—N1—C10—N234.68 (18)C3—C4—C5—C6−0.6 (4)
C10—N2—C9—S262.06 (13)C4—C5—C6—C1−0.2 (3)
C11—N2—C9—S2−68.49 (15)N2—C11—C12—C13177.42 (13)
C9—N2—C10—N1−65.65 (15)C11—C12—C13—C14−178.86 (16)
C11—N2—C10—N164.09 (17)
D—H···AD—HH···AD···AD—H···A
C7—H7B···S10.972.603.0978 (16)112
C12—H12B···CgA0.972.963.7937 (19)145
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C7—H7B⋯S10.972.603.0978 (16)112
C12—H12B⋯CgA0.972.963.7937 (19)145

CgA is the centroid of the C1–C6 ring.

  6 in total

1.  The Cambridge Structural Database: a quarter of a million crystal structures and rising.

Authors:  Frank H Allen
Journal:  Acta Crystallogr B       Date:  2002-05-29

2.  New 2H-tetrahydro-1, 3, 5-thiadiazine-2-thiones incorporating glycine and glycinamide as potential antifungal agents.

Authors:  Tarek Aboul-Fadl; Mostafa A Hussein; Abdel-Nasser El-Shorbagi; Abdel-Raouf Khallil
Journal:  Arch Pharm (Weinheim)       Date:  2002-11       Impact factor: 3.751

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  Synthesis and antiprotozoan evaluation of new alkyl-linked bis(2-thioxo-[1,3,5]thiadiazinan-3-yl) carboxylic acids.

Authors:  Julieta Coro; Rolando Pérez; Hortensia Rodríguez; Margarita Suárez; Celeste Vega; Miriam Rolón; David Montero; Juan José Nogal; Alicia Gómez-Barrio
Journal:  Bioorg Med Chem       Date:  2005-05-16       Impact factor: 3.641

5.  Synthesis and antimicrobial activities of some new tetrahydro-2H-1,3,5-thiadiazine-2-thione derivatives of ampicillin.

Authors:  M Ertan; A B Tayhan; N Yulug
Journal:  Arch Pharm (Weinheim)       Date:  1990-09       Impact factor: 3.751

6.  Synthesis and antifungal activities of some new tetrahydro-2H-1,3,5-thiadiazine-2-thiones.

Authors:  M Ertan; H G Ayyildiz; N Yulug
Journal:  Arzneimittelforschung       Date:  1991-11
  6 in total
  1 in total

1.  2-[6-Thioxo-5-(2,4,6-trimethyl-phen-yl)-1,3,5-thia-diazinan-3-yl]acetic acid.

Authors:  Mohammad Arfan; M Nawaz Tahir; Muhammad Ishaq Ali Shah; Rassol Khan; Mohammad S Iqbal
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-03-28
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.