Literature DB >> 21582089

Poly[[[diaqua-cobalt(II)]-bis-[μ(2)-1,1'-(butane-1,4-di-yl)diimidazole-κN:N]] dinitrate].

Yu Su, Chuan He, Zhi-Zhong Sun, Guang-Feng Hou, Jin-Sheng Gao.   

Abstract

In the title compound, {[Co(C(10)H(14)N(4))(2)(H(2)O)(2)](NO(3))(2)}(n), the Co(II) ion lies on an inversion center and is six-coordinated in an octa-hedral environment by four N atoms from four different 1,1'-butane-1,4-diyldiimidazole ligands and two O atoms from the two water mol-ecules. The Co(II) atoms are bridged by ligands, generating a two-dimensional (4,4)-network. Adjacent fishnet planes are linked to the nitrate anions via O-H⋯O hydrogen bonds, forming a three-dimensional supra-molecular structure.

Entities:  

Year:  2009        PMID: 21582089      PMCID: PMC2968530          DOI: 10.1107/S1600536809005881

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of 1,1′-butane-1,4-diyldiimidazole, see: Ma et al. (2003 ▶); Yu et al. (2008 ▶) For a related Co complex, see: Dong & Zhang (2006 ▶).

Experimental

Crystal data

[Co(C10H14N4)2(H2O)2](NO3)2 M = 599.49 Triclinic, a = 8.574 (7) Å b = 8.692 (6) Å c = 9.666 (5) Å α = 104.71 (2)° β = 97.14 (3)° γ = 98.89 (3)° V = 678.2 (8) Å3 Z = 1 Mo Kα radiation μ = 0.70 mm−1 T = 291 K 0.45 × 0.28 × 0.26 mm

Data collection

Rigaku R-AXIS RAPID diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.745, T max = 0.842 6717 measured reflections 3073 independent reflections 2888 reflections with I > 2σ(I) R int = 0.015

Refinement

R[F 2 > 2σ(F 2)] = 0.031 wR(F 2) = 0.096 S = 1.16 3073 reflections 178 parameters H-atom parameters constrained Δρmax = 0.35 e Å−3 Δρmin = −0.22 e Å−3 Data collection: RAPID-AUTO (Rigaku, 1998 ▶); cell refinement: RAPID-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2002 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809005881/ng2547sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809005881/ng2547Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Co(C10H14N4)2(H2O)2](NO3)2Z = 1
Mr = 599.49F(000) = 313
Triclinic, P1Dx = 1.468 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.574 (7) ÅCell parameters from 6295 reflections
b = 8.692 (6) Åθ = 3.0–27.5°
c = 9.666 (5) ŵ = 0.70 mm1
α = 104.71 (2)°T = 291 K
β = 97.14 (3)°Block, brown
γ = 98.89 (3)°0.45 × 0.28 × 0.26 mm
V = 678.2 (8) Å3
Rigaku R-AXIS RAPID diffractometer3073 independent reflections
Radiation source: fine-focus sealed tube2888 reflections with I > 2σ(I)
graphiteRint = 0.015
ω scansθmax = 27.5°, θmin = 3.0°
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)h = −11→11
Tmin = 0.745, Tmax = 0.842k = −11→11
6717 measured reflectionsl = −12→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.031Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.096H-atom parameters constrained
S = 1.16w = 1/[σ2(Fo2) + (0.0539P)2 + 0.1966P] where P = (Fo2 + 2Fc2)/3
3073 reflections(Δ/σ)max < 0.001
178 parametersΔρmax = 0.35 e Å3
0 restraintsΔρmin = −0.22 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.1755 (2)0.2246 (2)0.53022 (19)0.0325 (4)
H10.21060.28220.62720.039*
C20.0680 (2)0.1572 (2)0.30656 (19)0.0336 (4)
H20.01310.16050.21840.040*
C30.1346 (2)0.0324 (2)0.3277 (2)0.0372 (4)
H30.1343−0.06420.25860.045*
C40.2858 (2)−0.0192 (3)0.5505 (2)0.0424 (5)
H40.2518−0.13330.49890.051*
H50.2548−0.00330.64550.051*
C50.4672 (2)0.0257 (2)0.5695 (2)0.0386 (4)
H60.49970.14230.60920.046*
H70.5142−0.02410.63930.046*
C60.2528 (2)0.6569 (2)0.77832 (18)0.0304 (3)
H80.17360.66500.83590.036*
C70.3724 (2)0.6120 (2)0.59375 (19)0.0315 (3)
H90.39040.58250.49850.038*
C80.4887 (2)0.6696 (2)0.7135 (2)0.0352 (4)
H100.59890.68660.71590.042*
C90.4832 (3)0.7684 (3)0.9839 (2)0.0437 (5)
H110.56430.70911.00920.052*
H120.40180.75841.04410.052*
C100.5592 (2)0.9465 (3)1.0135 (2)0.0449 (5)
H130.61300.98681.11370.054*
H140.63980.95500.95230.054*
Co10.00000.50000.50000.02274 (11)
N10.09324 (17)0.27910 (17)0.43482 (15)0.0296 (3)
N20.20264 (17)0.07610 (18)0.47097 (17)0.0318 (3)
N30.22398 (16)0.60381 (16)0.63499 (15)0.0273 (3)
N40.41025 (18)0.69767 (19)0.83026 (16)0.0329 (3)
N50.8937 (2)0.6642 (2)0.02300 (18)0.0456 (4)
O10.08701 (16)0.57801 (16)0.32103 (13)0.0362 (3)
H150.12990.51430.26190.054*
H160.02150.61770.27340.054*
O20.8432 (2)0.6759 (3)0.13902 (17)0.0653 (5)
O31.0374 (3)0.7011 (3)0.0241 (2)0.0777 (6)
O40.7986 (3)0.6117 (3)−0.09384 (18)0.0784 (7)
U11U22U33U12U13U23
C10.0368 (9)0.0342 (9)0.0280 (8)0.0154 (7)0.0043 (6)0.0069 (6)
C20.0329 (9)0.0340 (9)0.0296 (8)0.0099 (7)−0.0003 (6)0.0018 (7)
C30.0351 (9)0.0295 (8)0.0410 (10)0.0095 (7)0.0044 (7)−0.0016 (7)
C40.0378 (10)0.0439 (10)0.0616 (12)0.0199 (8)0.0163 (9)0.0325 (9)
C50.0347 (9)0.0401 (10)0.0481 (11)0.0173 (8)0.0071 (8)0.0188 (8)
C60.0275 (8)0.0326 (8)0.0281 (8)0.0071 (6)0.0016 (6)0.0040 (6)
C70.0294 (8)0.0352 (9)0.0289 (8)0.0104 (7)0.0043 (6)0.0050 (6)
C80.0252 (8)0.0408 (9)0.0361 (9)0.0074 (7)0.0022 (7)0.0052 (7)
C90.0417 (10)0.0535 (12)0.0264 (9)0.0104 (9)−0.0092 (7)0.0006 (8)
C100.0347 (10)0.0518 (12)0.0331 (10)0.0069 (8)−0.0095 (7)−0.0068 (8)
Co10.02260 (16)0.02296 (16)0.02042 (16)0.00763 (11)−0.00069 (10)0.00224 (11)
N10.0317 (7)0.0279 (7)0.0289 (7)0.0123 (6)0.0024 (5)0.0046 (5)
N20.0292 (7)0.0300 (7)0.0415 (8)0.0124 (6)0.0095 (6)0.0137 (6)
N30.0256 (7)0.0269 (7)0.0267 (7)0.0074 (5)−0.0003 (5)0.0034 (5)
N40.0286 (7)0.0367 (8)0.0273 (7)0.0071 (6)−0.0034 (5)0.0017 (6)
N50.0577 (11)0.0593 (11)0.0302 (8)0.0315 (9)0.0132 (7)0.0166 (7)
O10.0396 (7)0.0424 (7)0.0261 (6)0.0096 (5)0.0033 (5)0.0091 (5)
O20.0727 (12)0.0991 (15)0.0351 (8)0.0308 (11)0.0235 (8)0.0233 (9)
O30.0612 (12)0.1029 (17)0.0649 (12)0.0139 (11)0.0261 (10)0.0096 (11)
O40.0786 (13)0.1321 (19)0.0324 (8)0.0623 (13)0.0048 (8)0.0143 (10)
C1—N11.318 (2)C8—N41.373 (2)
C1—N21.341 (2)C8—H100.9300
C1—H10.9300C9—N41.470 (2)
C2—C31.350 (3)C9—C101.523 (3)
C2—N11.379 (2)C9—H110.9700
C2—H20.9300C9—H120.9700
C3—N21.366 (3)C10—C10ii1.521 (4)
C3—H30.9300C10—H130.9700
C4—N21.469 (2)C10—H140.9700
C4—C51.519 (3)Co1—N32.109 (2)
C4—H40.9700Co1—N3iii2.109 (2)
C4—H50.9700Co1—N1iii2.1697 (18)
C5—C5i1.510 (4)Co1—N12.1697 (18)
C5—H60.9700Co1—O1iii2.1838 (16)
C5—H70.9700Co1—O12.1838 (16)
C6—N31.322 (2)N5—O31.222 (3)
C6—N41.339 (2)N5—O21.238 (2)
C6—H80.9300N5—O41.243 (3)
C7—C81.360 (3)O1—H150.8501
C7—N31.377 (2)O1—H160.8500
C7—H90.9300
N1—C1—N2112.01 (16)C9—C10—H13108.7
N1—C1—H1124.0C10ii—C10—H14108.7
N2—C1—H1124.0C9—C10—H14108.7
C3—C2—N1110.00 (16)H13—C10—H14107.6
C3—C2—H2125.0N3—Co1—N3iii180.0
N1—C2—H2125.0N3—Co1—N1iii93.01 (7)
C2—C3—N2106.29 (15)N3iii—Co1—N1iii86.99 (7)
C2—C3—H3126.9N3—Co1—N186.99 (7)
N2—C3—H3126.9N3iii—Co1—N193.01 (7)
N2—C4—C5113.21 (16)N1iii—Co1—N1180.0
N2—C4—H4108.9N3—Co1—O1iii89.33 (7)
C5—C4—H4108.9N3iii—Co1—O1iii90.67 (7)
N2—C4—H5108.9N1iii—Co1—O1iii89.79 (6)
C5—C4—H5108.9N1—Co1—O1iii90.21 (6)
H4—C4—H5107.8N3—Co1—O190.67 (7)
C5i—C5—C4113.9 (2)N3iii—Co1—O189.33 (7)
C5i—C5—H6108.8N1iii—Co1—O190.21 (6)
C4—C5—H6108.8N1—Co1—O189.79 (6)
C5i—C5—H7108.8O1iii—Co1—O1180.0
C4—C5—H7108.8C1—N1—C2104.72 (15)
H6—C5—H7107.7C1—N1—Co1121.60 (12)
N3—C6—N4111.57 (16)C2—N1—Co1133.01 (12)
N3—C6—H8124.2C1—N2—C3106.97 (15)
N4—C6—H8124.2C1—N2—C4124.90 (17)
C8—C7—N3109.66 (16)C3—N2—C4128.10 (16)
C8—C7—H9125.2C6—N3—C7105.41 (14)
N3—C7—H9125.2C6—N3—Co1127.19 (12)
C7—C8—N4105.97 (16)C7—N3—Co1126.95 (12)
C7—C8—H10127.0C6—N4—C8107.39 (15)
N4—C8—H10127.0C6—N4—C9125.56 (17)
N4—C9—C10110.98 (17)C8—N4—C9126.96 (16)
N4—C9—H11109.4O3—N5—O2119.7 (2)
C10—C9—H11109.4O3—N5—O4120.4 (2)
N4—C9—H12109.4O2—N5—O4119.8 (2)
C10—C9—H12109.4Co1—O1—H15119.0
H11—C9—H12108.0Co1—O1—H16115.0
C10ii—C10—C9114.1 (2)H15—O1—H16109.0
C10ii—C10—H13108.7
D—H···AD—HH···AD···AD—H···A
O1—H15···O4iv0.851.942.775 (3)167
O1—H16···O2v0.852.092.930 (3)171
Co1—N32.109 (2)
Co1—N12.1697 (18)
Co1—O12.1838 (16)
N3—Co1—N186.99 (7)
N3—Co1—O190.67 (7)
N1—Co1—O189.79 (6)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H15⋯O4i0.851.942.775 (3)167
O1—H16⋯O2ii0.852.092.930 (3)171

Symmetry codes: (i) ; (ii) .

  3 in total

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Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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Authors:  Ying-Hui Yu; Ai-E Shi; Yu Su; Guang-Feng Hou; Jin-Sheng Gao
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3.  A porous supramolecular architecture from a copper(II) coordination polymer with a 3D four-connected 8(6) net.

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  3 in total

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