Literature DB >> 21582082

catena-Poly[[(pyridine-κN)copper(II)]-μ(3)-pyridine-2,6-dicarboxylato-κO:O,N,O:O].

Manoj Trivedi, Daya Shankar Pandey, Nigam P Rath.   

Abstract

In the title compound, [Cu(C(7)H(3)NO(4))(C(5)H(5)N)](n), the Cu(II) atom is in a slightly distorted octa-hedral coordination environment. Each Cu(II) atom is bound to two N atoms and one O atom of the pyridine-dicarboxyl-ate (PDA) ligand in a tridentate manner, one N atom of the pyridine mol-ecule and two bridging carboxyl-ate O atoms of adjacent PDA ligands, leading to a linear one-dimensional chain running along the c axis. These chains are further assembled via weak C-H⋯O and π-π inter-actions into a three-dimensional supra-molecular network structure. The centroid-centroid distance between the π-π inter-acting pyridine rings is 3.9104 (13) Å. The two N atoms are trans to each other with respect to Cu.

Entities:  

Year:  2009        PMID: 21582082      PMCID: PMC2968654          DOI: 10.1107/S1600536809005212

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background information on coordination polymers, see: Kitagawa et al. (2004 ▶); Kirillov et al. (2008 ▶); Hoskins & Robson (1990 ▶); Eddaoudi et al. (2001 ▶). For related polymeric structures of PDA complexes, see, for example: Zhao et al. (2003 ▶); Choi et al. (2003 ▶); Ghosh et al. (2004 ▶); Xie et al. (2004 ▶). For related structures of Cu complexes, see: Uçar et al. (2007 ▶); Manna et al. (2007 ▶); Gao et al. (2006 ▶).

Experimental

Crystal data

[Cu(C7H3NO4)(C5H5N)] M = 307.74 Monoclinic, a = 7.8042 (9) Å b = 13.6152 (17) Å c = 10.0667 (12) Å β = 91.687 (4)° V = 1069.2 (2) Å3 Z = 4 Mo Kα radiation μ = 2.06 mm−1 T = 100 K 0.21 × 0.13 × 0.08 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (; Bruker, 2007 ▶) T min = 0.671, T max = 0.848 3530 measured reflections 981 independent reflections 859 reflections with I > 2σ(I) R int = 0.036

Refinement

R[F 2 > 2σ(F 2)] = 0.029 wR(F 2) = 0.074 S = 1.10 981 reflections 89 parameters H-atom parameters not refined Δρmax = 0.41 e Å−3 Δρmin = −0.60 e Å−3 Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809005212/is2384sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809005212/is2384Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu(C7H3NO4)(C5H5N)]F(000) = 620
Mr = 307.74Dx = 1.912 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 1607 reflections
a = 7.8042 (9) Åθ = 3.0–25.3°
b = 13.6152 (17) ŵ = 2.06 mm1
c = 10.0667 (12) ÅT = 100 K
β = 91.687 (4)°Needle, blue
V = 1069.2 (2) Å30.21 × 0.13 × 0.08 mm
Z = 4
Bruker APEXII CCD area-detector diffractometer981 independent reflections
Radiation source: fine-focus sealed tube859 reflections with I > 2σ(I)
graphiteRint = 0.036
φ and ω scansθmax = 25.3°, θmin = 3.0°
Absorption correction: multi-scan (SADABS; Bruker, 2007)h = −9→8
Tmin = 0.671, Tmax = 0.848k = −16→16
3530 measured reflectionsl = −12→11
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.029Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.074H-atom parameters not refined
S = 1.10w = 1/[σ2(Fo2) + (0.0347P)2 + 1.5139P] where P = (Fo2 + 2Fc2)/3
981 reflections(Δ/σ)max < 0.001
89 parametersΔρmax = 0.41 e Å3
0 restraintsΔρmin = −0.60 e Å3
Experimental. All H atoms were added in their calculated positions and were treated using appropriate riding models.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cu10.50000.06463 (3)0.25000.01055 (18)
O10.3461 (2)0.04164 (13)0.08928 (18)0.0119 (4)
O20.2652 (2)−0.07906 (13)−0.05100 (19)0.0137 (4)
N10.50000.2074 (2)0.25000.0099 (7)
N20.5000−0.0746 (2)0.25000.0096 (7)
C10.3334 (3)−0.04888 (19)0.0526 (3)0.0111 (6)
C20.4161 (3)−0.1210 (2)0.1514 (3)0.0100 (6)
C30.4135 (3)−0.2221 (2)0.1484 (3)0.0120 (6)
H30.3542−0.25640.07890.014*
C40.5000−0.2728 (3)0.25000.0130 (8)
H40.5000−0.34260.25000.016*
C50.5748 (3)0.2583 (2)0.3507 (3)0.0124 (6)
H50.62860.22300.42180.015*
C60.5765 (4)0.3594 (2)0.3549 (3)0.0154 (6)
H60.62900.39310.42810.018*
C70.50000.4112 (3)0.25000.0159 (9)
H70.50000.48100.25000.019*
U11U22U33U12U13U23
Cu10.0144 (3)0.0059 (3)0.0109 (3)0.000−0.00649 (18)0.000
O10.0151 (10)0.0074 (10)0.0129 (10)−0.0014 (8)−0.0066 (8)0.0000 (8)
O20.0173 (10)0.0117 (11)0.0118 (10)−0.0026 (8)−0.0068 (8)−0.0017 (8)
N10.0095 (16)0.0095 (17)0.0108 (17)0.000−0.0009 (13)0.000
N20.0085 (16)0.0102 (17)0.0100 (16)0.000−0.0009 (13)0.000
C10.0114 (14)0.0106 (14)0.0114 (15)−0.0017 (11)−0.0007 (11)0.0004 (11)
C20.0080 (13)0.0125 (15)0.0095 (14)−0.0020 (11)−0.0011 (11)−0.0023 (11)
C30.0122 (14)0.0131 (15)0.0108 (14)−0.0006 (11)−0.0019 (11)−0.0018 (11)
C40.014 (2)0.009 (2)0.016 (2)0.0000.0001 (16)0.000
C50.0124 (14)0.0138 (15)0.0110 (15)0.0001 (11)−0.0012 (11)0.0007 (11)
C60.0163 (15)0.0136 (15)0.0163 (16)−0.0035 (12)0.0025 (12)−0.0042 (12)
C70.016 (2)0.009 (2)0.023 (2)0.0000.0055 (17)0.000
Cu1—N21.896 (3)C2—C31.378 (4)
Cu1—N11.944 (3)C3—C41.392 (3)
Cu1—O12.0110 (18)C3—H30.9500
Cu1—O1i2.0110 (18)C4—C3i1.392 (3)
O1—C11.290 (3)C4—H40.9500
O2—C11.228 (3)C5—C61.378 (4)
N1—C5i1.347 (3)C5—H50.9500
N1—C51.347 (3)C6—C71.390 (3)
N2—C21.332 (3)C6—H60.9500
N2—C2i1.332 (3)C7—C6i1.390 (3)
C1—C21.527 (4)C7—H70.9500
N2—Cu1—N1180.0N2—C2—C1111.7 (2)
N2—Cu1—O181.05 (5)C3—C2—C1128.5 (2)
N1—Cu1—O198.95 (5)C2—C3—C4118.2 (3)
N2—Cu1—O1i81.05 (5)C2—C3—H3120.9
N1—Cu1—O1i98.95 (5)C4—C3—H3120.9
O1—Cu1—O1i162.10 (10)C3—C4—C3i120.6 (4)
C1—O1—Cu1114.71 (16)C3—C4—H4119.7
C5i—N1—C5118.1 (3)C3i—C4—H4119.7
C5i—N1—Cu1120.97 (16)N1—C5—C6122.8 (3)
C5—N1—Cu1120.96 (16)N1—C5—H5118.6
C2—N2—C2i123.4 (3)C6—C5—H5118.6
C2—N2—Cu1118.28 (16)C5—C6—C7118.7 (3)
C2i—N2—Cu1118.28 (16)C5—C6—H6120.7
O2—C1—O1126.2 (2)C7—C6—H6120.7
O2—C1—C2120.2 (2)C6i—C7—C6119.0 (4)
O1—C1—C2113.6 (2)C6i—C7—H7120.5
N2—C2—C3119.8 (3)C6—C7—H7120.5
N2—Cu1—O1—C1−6.98 (18)Cu1—N2—C2—C3−179.96 (18)
N1—Cu1—O1—C1173.02 (18)C2i—N2—C2—C1−179.7 (2)
O1i—Cu1—O1—C1−6.98 (18)Cu1—N2—C2—C10.3 (2)
O1—Cu1—N1—C5i−6.84 (14)O2—C1—C2—N2172.9 (2)
O1i—Cu1—N1—C5i173.16 (14)O1—C1—C2—N2−6.2 (3)
O1—Cu1—N1—C5173.16 (14)O2—C1—C2—C3−6.8 (4)
O1i—Cu1—N1—C5−6.84 (14)O1—C1—C2—C3174.1 (3)
O1—Cu1—N2—C23.29 (14)N2—C2—C3—C4−0.1 (4)
O1i—Cu1—N2—C2−176.71 (14)C1—C2—C3—C4179.6 (2)
O1—Cu1—N2—C2i−176.71 (14)C2—C3—C4—C3i0.03 (18)
O1i—Cu1—N2—C2i3.29 (14)C5i—N1—C5—C60.47 (19)
Cu1—O1—C1—O2−170.2 (2)Cu1—N1—C5—C6−179.53 (19)
Cu1—O1—C1—C28.8 (3)N1—C5—C6—C7−0.9 (4)
C2i—N2—C2—C30.04 (18)C5—C6—C7—C6i0.44 (18)
D—H···AD—HH···AD···AD—H···A
C3—H3···O2ii0.952.443.187 (3)135
C5—H5···O1i0.952.483.070 (3)120
C6—H6···O1iii0.952.483.394 (3)162
Table 1

Selected bond lengths (Å)

Cu1—N21.896 (3)
Cu1—N11.944 (3)
Cu1—O12.0110 (18)
Cu1—O1i2.0110 (18)

Symmetry code: (i) .

Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C3—H3⋯O2ii0.952.443.187 (3)135
C5—H5⋯O1i0.952.483.070 (3)120
C6—H6⋯O1iii0.952.483.394 (3)162

Symmetry codes: (i) ; (ii) ; (iii) .

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