Literature DB >> 21582027

1-(2-Fluoro-benz-yl)-1-(2-fluoro-benz-yl-oxy)urea.

Xi Mai, Hong-Ying Xia, Yu-Sheng Cao, Xiao-San Lu, Xiao-Niu Fang.   

Abstract

In the title hydroxy-urea derivative, C(15)H(14)F(2)N(2)O(2), the dihedral angle between the two benzene rings is 48.64 (19)°. The urea group forms dihedral angles of 48.1 (2) and 79.2 (2)° with the two benzene rings. In the crystal, inversion dimers linked by pairs of N-H⋯O hydrogen bonds occur, and further N-H⋯O links lead to chains of molecules.

Entities:  

Year:  2009        PMID: 21582027      PMCID: PMC2968304          DOI: 10.1107/S1600536809000622

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For geneal background, see: Krakoff et al. (1968 ▶); Young et al. (1967 ▶) and Yu et al. (1974 ▶). For related structures, see: Howard et al. (1967 ▶); Thiessen et al. (1978 ▶); Armagan et al. (1976 ▶); Berman & Kim (1967 ▶); Larsen et al. (1966 ▶); Nielsen et al. (1993 ▶).

Experimental

Crystal data

C15H14F2N2O2 M = 292.28 Monoclinic, a = 5.196 (5) Å b = 30.11 (3) Å c = 9.059 (8) Å β = 102.110 (16)° V = 1386 (2) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 296 (2) K 0.34 × 0.13 × 0.07 mm

Data collection

Bruker APEXII area-detector diffractometer Absorption correction: none 8214 measured reflections 2416 independent reflections 1042 reflections with I > 2σ(I) R int = 0.051

Refinement

R[F 2 > 2σ(F 2)] = 0.080 wR(F 2) = 0.260 S = 1.02 2416 reflections 166 parameters H-atom parameters constrained Δρmax = 0.39 e Å−3 Δρmin = −0.37 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: publCIF (Westrip, 2009 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809000622/xu2472sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809000622/xu2472Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H14F2N2O2F(000) = 608
Mr = 292.28Dx = 1.401 Mg m3
Monoclinic, P21/cMelting point: 414.0 K
Hall symbol: -P 2ybcMo Kα radiation, λ = 0.71073 Å
a = 5.196 (5) ÅCell parameters from 1260 reflections
b = 30.11 (3) Åθ = 2.4–19.3°
c = 9.059 (8) ŵ = 0.11 mm1
β = 102.110 (16)°T = 296 K
V = 1386 (2) Å3Needle, colourless
Z = 40.34 × 0.13 × 0.07 mm
Bruker APEXII area-detector diffractometer1042 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.051
graphiteθmax = 25.0°, θmin = 2.4°
φ and ω scansh = −6→6
8214 measured reflectionsk = −35→35
2416 independent reflectionsl = −10→10
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.080Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.260H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.14P)2] where P = (Fo2 + 2Fc2)/3
2416 reflections(Δ/σ)max < 0.001
166 parametersΔρmax = 0.39 e Å3
0 restraintsΔρmin = −0.37 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C100.2248 (6)0.40316 (12)0.5643 (3)0.0675 (13)
C11−0.0040 (7)0.38153 (11)0.4930 (4)0.0829 (15)
C12−0.1631 (6)0.40007 (16)0.3653 (4)0.106 (2)
H12−0.31620.38560.31750.127*
C13−0.0935 (9)0.44024 (17)0.3089 (4)0.118 (2)
H13−0.20000.45260.22350.141*
C140.1352 (10)0.46187 (12)0.3803 (5)0.119 (2)
H140.18180.48870.34260.142*
C150.2944 (7)0.44333 (12)0.5080 (5)0.0938 (17)
H150.44740.45780.55570.113*
C30.1504 (7)0.31233 (9)0.9537 (4)0.0677 (13)
C40.3952 (7)0.29896 (13)1.0354 (4)0.0867 (16)
C50.4847 (6)0.25614 (15)1.0185 (5)0.108 (2)
H50.64840.24721.07320.130*
C60.3294 (9)0.22670 (10)0.9199 (5)0.1050 (19)
H60.38930.19800.90860.126*
C70.0846 (9)0.24007 (11)0.8383 (5)0.113 (2)
H7−0.01920.22040.77230.135*
C8−0.0049 (6)0.28289 (12)0.8552 (4)0.0964 (18)
H8−0.16860.29180.80050.116*
C10.3969 (8)0.43961 (14)0.9001 (5)0.0581 (11)
C20.0492 (10)0.35829 (16)0.9702 (6)0.0767 (14)
H2A−0.13220.35640.98120.092*
H2B0.15120.37161.06150.092*
C90.3958 (9)0.38360 (15)0.7028 (5)0.0675 (13)
H9A0.38500.35150.69530.081*
H9B0.57690.39190.70500.081*
F10.5413 (8)0.32477 (14)1.1264 (5)0.1447 (16)
F2−0.0789 (8)0.34425 (11)0.5430 (4)0.1243 (13)
N10.3293 (6)0.39708 (11)0.8446 (4)0.0594 (10)
N20.2206 (7)0.46056 (11)0.9610 (4)0.0693 (11)
H2C0.25630.48631.00150.083*
H2D0.07040.44850.96010.083*
O10.0624 (5)0.38636 (9)0.8448 (3)0.0635 (9)
O20.6157 (6)0.45452 (10)0.8966 (4)0.0719 (10)
U11U22U33U12U13U23
C100.062 (3)0.080 (3)0.062 (3)0.000 (3)0.018 (2)−0.019 (2)
C110.080 (4)0.097 (4)0.071 (4)−0.010 (3)0.014 (3)−0.025 (3)
C120.095 (4)0.139 (6)0.080 (4)−0.020 (4)0.008 (4)−0.029 (4)
C130.132 (6)0.145 (6)0.070 (4)0.005 (5)0.006 (4)0.003 (4)
C140.141 (6)0.123 (5)0.084 (5)−0.021 (5)0.006 (4)0.016 (4)
C150.092 (4)0.111 (4)0.080 (4)−0.015 (3)0.020 (3)−0.001 (3)
C30.071 (3)0.072 (3)0.064 (3)−0.015 (3)0.021 (3)0.002 (2)
C40.084 (4)0.091 (4)0.077 (4)−0.011 (3)−0.003 (3)0.006 (3)
C50.106 (5)0.111 (5)0.102 (5)0.010 (4)0.007 (4)0.036 (4)
C60.127 (5)0.083 (4)0.108 (5)0.007 (4)0.031 (4)0.016 (4)
C70.106 (5)0.097 (5)0.121 (5)0.000 (4)−0.009 (4)−0.008 (4)
C80.108 (4)0.067 (4)0.104 (4)−0.001 (3)0.000 (3)−0.011 (3)
C10.050 (3)0.064 (3)0.059 (3)0.004 (2)0.008 (2)−0.006 (2)
C20.075 (3)0.082 (3)0.076 (3)−0.015 (3)0.023 (3)−0.006 (3)
C90.056 (3)0.070 (3)0.080 (3)0.004 (2)0.022 (2)−0.021 (2)
F10.140 (3)0.135 (3)0.133 (3)−0.026 (3)−0.031 (2)−0.013 (2)
F20.134 (3)0.105 (3)0.129 (3)−0.038 (2)0.016 (2)−0.019 (2)
N10.049 (2)0.061 (2)0.069 (2)−0.0016 (16)0.0145 (17)−0.0087 (18)
N20.054 (2)0.063 (2)0.096 (3)−0.0041 (18)0.027 (2)−0.018 (2)
O10.0480 (17)0.0676 (19)0.077 (2)−0.0041 (14)0.0176 (15)−0.0076 (15)
O20.0490 (18)0.074 (2)0.095 (2)−0.0078 (16)0.0216 (16)−0.0186 (16)
C10—C111.3900C5—H50.9300
C10—C151.3900C6—C71.3900
C10—C91.497 (6)C6—H60.9300
C11—F21.301 (4)C7—C81.3900
C11—C121.3900C7—H70.9300
C12—C131.3900C8—H80.9300
C12—H120.9300C1—O21.229 (5)
C13—C141.3900C1—N21.324 (5)
C13—H130.9300C1—N11.394 (5)
C14—C151.3900C2—O11.429 (6)
C14—H140.9300C2—H2A0.9700
C15—H150.9300C2—H2B0.9700
C3—C41.3900C9—N11.457 (6)
C3—C81.3900C9—H9A0.9700
C3—C21.499 (6)C9—H9B0.9700
C4—F11.264 (4)N1—O11.424 (4)
C4—C51.3900N2—H2C0.8600
C5—C61.3900N2—H2D0.8600
C11—C10—C15120.0C5—C6—H6120.0
C11—C10—C9120.3 (3)C6—C7—C8120.0
C15—C10—C9119.7 (3)C6—C7—H7120.0
F2—C11—C12117.9 (3)C8—C7—H7120.0
F2—C11—C10122.1 (3)C7—C8—C3120.0
C12—C11—C10120.0C7—C8—H8120.0
C11—C12—C13120.0C3—C8—H8120.0
C11—C12—H12120.0O2—C1—N2124.2 (4)
C13—C12—H12120.0O2—C1—N1119.4 (4)
C14—C13—C12120.0N2—C1—N1116.4 (4)
C14—C13—H13120.0O1—C2—C3113.0 (4)
C12—C13—H13120.0O1—C2—H2A109.0
C13—C14—C15120.0C3—C2—H2A109.0
C13—C14—H14120.0O1—C2—H2B109.0
C15—C14—H14120.0C3—C2—H2B109.0
C14—C15—C10120.0H2A—C2—H2B107.8
C14—C15—H15120.0N1—C9—C10114.9 (3)
C10—C15—H15120.0N1—C9—H9A108.6
C4—C3—C8120.0C10—C9—H9A108.6
C4—C3—C2121.0 (3)N1—C9—H9B108.6
C8—C3—C2119.0 (3)C10—C9—H9B108.6
F1—C4—C5118.2 (4)H9A—C9—H9B107.5
F1—C4—C3121.8 (4)C1—N1—O1112.3 (3)
C5—C4—C3120.0C1—N1—C9119.0 (4)
C4—C5—C6120.0O1—N1—C9110.4 (3)
C4—C5—H5120.0C1—N2—H2C120.0
C6—C5—H5120.0C1—N2—H2D120.0
C7—C6—C5120.0H2C—N2—H2D120.0
C7—C6—H6120.0N1—O1—C2110.1 (3)
D—H···AD—HH···AD···AD—H···A
N2—H2C···O2i0.862.052.910 (5)174
N2—H2D···O2ii0.862.323.079 (5)148
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2C⋯O2i0.862.052.910 (5)174
N2—H2D⋯O2ii0.862.323.079 (5)148

Symmetry codes: (i) ; (ii) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Antimitotic effects of hydroxyurea and its derivatives: structure-activity relationships.

Authors:  R J Yu; E J Van Scott
Journal:  J Invest Dermatol       Date:  1974-09       Impact factor: 8.551

3.  Inhibition of ribonucleoside diphosphate reductase by hydroxyurea.

Authors:  I H Krakoff; N C Brown; P Reichard
Journal:  Cancer Res       Date:  1968-08       Impact factor: 12.701

4.  Inhibition of DNA synthesis by hydroxyurea: structure-activity relationships.

Authors:  C W Young; G Schochetman; S Hodas; M E Balis
Journal:  Cancer Res       Date:  1967-03       Impact factor: 12.701

5.  A second determination of the structure of hydroxyurea.

Authors:  H Berman; S H Kim
Journal:  Acta Crystallogr       Date:  1967-07-10
  5 in total
  1 in total

1.  1-(3-Chloro-benz-yloxy)urea.

Authors:  Xi Mai; Hong-Ying Xia; Yu-Sheng Cao; Wei Tong; Guo-Gang Tu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-11-04
  1 in total

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