Literature DB >> 21581989

3-(2,6-Dioxopiperidin-3-yl)-3-aza-bicyclo-[3.2.0]heptane-2,4-dione.

Yousef M Hijji, Ellis Benjamin, Earl Benjamin, Ray J Butcher, Jerry P Jasinski.   

Abstract

The title mol-ecule, C(11)H(12)N(2)O(4), consists of a 3-aza-bicyclo-[3.2.0]heptane group containing a nearly planar cyclo-butane ring (r.m.s. deviation of fitted atoms is 0.0609 Å), fused to a pyrrolidine ring, bonded to a 2,6-dioxopiperidine ring at the 3-position. The angle between the mean planes of the cyclo-butane and fused pyrrolidine ring is 67.6 (6)°. The dihedral angles between the mean planes of the pyrrolidine and cyclo-butane rings and the dioxopiperidine ring are 73.9 (2) and 62.4 (4)°, respectively. The pyrrolidine and dioxopiperidine rings are twisted about the 3-yl group [torsion angles = -55.0 (1) and 115.0 (1)°] in a nearly perpendicular manner. Crystal packing is influenced by extensive inter-molecular C-H⋯O and N-H⋯O inter-actions between all four carbonyl O atoms and H atoms from the cyclo-butane and dioxopiperidine rings, as well as between the N atom and an H atom from the cyclo-butane ring. In addition, weak π-ring interactions also occur between H atoms from the cyclobutane ring and the five-membered pyrrolidine ring. As a result, mol-ecules are linked into infinite chains diagonally along the [101] plane of the unit cell in an alternate inverted pattern.

Entities:  

Year:  2009        PMID: 21581989      PMCID: PMC2968123          DOI: 10.1107/S1600536809002839

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Muller & Man (2008 ▶); Yamamoto et al. (2008 ▶); Zeldis (2008 ▶). For related literature, see: Carson et al. (2004 ▶); Werbel et al. (1968 ▶); Cremer & Pople (1975 ▶); Schmidt & Polik (2007 ▶).

Experimental

Crystal data

C11H12N2O4 M = 236.23 Monoclinic, a = 10.7332 (7) Å b = 9.9358 (5) Å c = 11.0753 (7) Å β = 116.201 (8)° V = 1059.75 (13) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 200 (2) K 0.57 × 0.34 × 0.19 mm

Data collection

Oxford Diffraction Gemini diffractometer Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2007 ▶) T min = 0.866, T max = 0.975 10798 measured reflections 3496 independent reflections 2193 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.108 S = 0.99 3496 reflections 154 parameters H-atom parameters constrained Δρmax = 0.28 e Å−3 Δρmin = −0.25 e Å−3 Data collection: CrysAlisPro (Oxford Diffraction, 2007 ▶); cell refinement: CrysAlisPro; data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809002839/cs2103sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809002839/cs2103Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H12N2O4F(000) = 496
Mr = 236.23Dx = 1.481 Mg m3
Monoclinic, P21/aMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2yabCell parameters from 4629 reflections
a = 10.7332 (7) Åθ = 4.9–32.6°
b = 9.9358 (5) ŵ = 0.11 mm1
c = 11.0753 (7) ÅT = 200 K
β = 116.201 (8)°Prism, colorless
V = 1059.75 (13) Å30.57 × 0.34 × 0.19 mm
Z = 4
Oxford Diffraction Gemini diffractometer3496 independent reflections
Radiation source: fine-focus sealed tube2193 reflections with I > 2σ(I)
graphiteRint = 0.025
Detector resolution: 10.5081 pixels mm-1θmax = 32.5°, θmin = 4.9°
φ and ω scansh = −14→16
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2007)k = −14→13
Tmin = 0.866, Tmax = 0.975l = −15→15
10798 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.108H-atom parameters constrained
S = 0.99w = 1/[σ2(Fo2) + (0.0607P)2] where P = (Fo2 + 2Fc2)/3
3496 reflections(Δ/σ)max < 0.001
154 parametersΔρmax = 0.28 e Å3
0 restraintsΔρmin = −0.25 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
O10.32277 (8)0.13630 (8)0.42230 (7)0.0271 (2)
O20.04309 (9)0.50429 (9)0.26752 (8)0.0372 (2)
O30.02024 (7)0.12103 (8)0.39189 (7)0.02458 (19)
O40.16813 (8)0.16581 (9)0.83857 (8)0.0350 (2)
N10.18201 (8)0.32243 (9)0.37104 (8)0.0196 (2)
N20.10433 (9)0.14479 (9)0.61681 (8)0.0222 (2)
H2B0.06830.06600.61950.027*
C10.25634 (10)0.22276 (11)0.34235 (10)0.0211 (2)
C20.23146 (11)0.24120 (12)0.19918 (11)0.0258 (3)
H2A0.31540.23150.18270.031*
C30.09860 (12)0.16602 (13)0.09668 (11)0.0340 (3)
H3A0.11540.10760.03300.041*
H3B0.04870.11640.13960.041*
C40.03228 (13)0.30239 (14)0.03642 (11)0.0357 (3)
H4A−0.05940.31720.03550.043*
H4B0.02810.3205−0.05320.043*
C50.15349 (12)0.37539 (12)0.15340 (11)0.0278 (3)
H5A0.20190.44640.12590.033*
C60.11702 (11)0.41346 (11)0.26561 (10)0.0240 (2)
C70.15765 (10)0.31947 (11)0.49000 (10)0.0190 (2)
H7A0.09050.39310.48050.023*
C80.08854 (9)0.18701 (11)0.49330 (10)0.0188 (2)
C90.17118 (10)0.21274 (12)0.73885 (10)0.0234 (2)
C100.24295 (11)0.34041 (11)0.73556 (10)0.0249 (2)
H10A0.32600.35200.82280.030*
H10B0.17990.41720.72390.030*
C110.28713 (10)0.34228 (11)0.62276 (10)0.0220 (2)
H11A0.35610.27040.63690.026*
H11B0.33000.43000.62090.026*
U11U22U33U12U13U23
O10.0272 (4)0.0236 (4)0.0302 (4)0.0056 (3)0.0125 (3)0.0028 (3)
O20.0488 (5)0.0302 (5)0.0331 (4)0.0158 (4)0.0185 (4)0.0085 (4)
O30.0235 (4)0.0233 (4)0.0256 (4)−0.0044 (3)0.0096 (3)−0.0028 (3)
O40.0448 (5)0.0383 (5)0.0276 (4)−0.0018 (4)0.0211 (4)0.0041 (4)
N10.0226 (4)0.0176 (5)0.0209 (4)0.0009 (3)0.0117 (3)0.0022 (4)
N20.0252 (4)0.0186 (5)0.0252 (4)−0.0048 (3)0.0134 (4)0.0012 (4)
C10.0196 (5)0.0198 (5)0.0263 (5)−0.0028 (4)0.0124 (4)−0.0009 (4)
C20.0295 (6)0.0251 (6)0.0279 (5)−0.0016 (4)0.0174 (5)−0.0016 (5)
C30.0441 (7)0.0330 (7)0.0254 (6)−0.0064 (5)0.0158 (5)−0.0041 (5)
C40.0385 (7)0.0436 (8)0.0218 (5)0.0015 (6)0.0103 (5)0.0005 (5)
C50.0347 (6)0.0256 (6)0.0255 (5)−0.0027 (5)0.0155 (5)0.0034 (5)
C60.0265 (5)0.0203 (6)0.0238 (5)−0.0007 (4)0.0098 (4)0.0032 (4)
C70.0203 (5)0.0170 (5)0.0217 (5)0.0004 (4)0.0110 (4)0.0008 (4)
C80.0156 (4)0.0195 (5)0.0224 (5)0.0016 (4)0.0093 (4)0.0013 (4)
C90.0226 (5)0.0247 (6)0.0248 (5)0.0025 (4)0.0122 (4)0.0012 (5)
C100.0294 (5)0.0217 (6)0.0225 (5)−0.0019 (4)0.0105 (4)−0.0023 (4)
C110.0215 (5)0.0193 (5)0.0248 (5)−0.0030 (4)0.0099 (4)−0.0014 (4)
O1—C11.2136 (13)C3—H3B0.9900
O2—C61.2080 (13)C4—C51.5520 (16)
O3—C81.2253 (12)C4—H4A0.9900
O4—C91.2125 (13)C4—H4B0.9900
N1—C11.3936 (14)C5—C61.5069 (16)
N1—C61.3959 (13)C5—H5A1.0000
N1—C71.4523 (13)C7—C81.5191 (15)
N2—C81.3679 (13)C7—C111.5298 (13)
N2—C91.3933 (13)C7—H7A1.0000
N2—H2B0.8800C9—C101.4929 (16)
C1—C21.4984 (15)C10—C111.5195 (15)
C2—C51.5364 (17)C10—H10A0.9900
C2—C31.5654 (15)C10—H10B0.9900
C2—H2A1.0000C11—H11A0.9900
C3—C41.5390 (18)C11—H11B0.9900
C3—H3A0.9900
C1—N1—C6113.25 (9)C6—C5—H5A115.6
C1—N1—C7122.88 (8)C2—C5—H5A115.6
C6—N1—C7123.25 (9)C4—C5—H5A115.6
C8—N2—C9127.22 (9)O2—C6—N1123.98 (10)
C8—N2—H2B116.4O2—C6—C5127.86 (10)
C9—N2—H2B116.4N1—C6—C5108.14 (9)
O1—C1—N1123.21 (9)N1—C7—C8108.95 (8)
O1—C1—C2129.16 (10)N1—C7—C11114.71 (8)
N1—C1—C2107.57 (9)C8—C7—C11110.57 (8)
C1—C2—C5105.78 (9)N1—C7—H7A107.4
C1—C2—C3112.87 (9)C8—C7—H7A107.4
C5—C2—C389.18 (8)C11—C7—H7A107.4
C1—C2—H2A115.3O3—C8—N2120.82 (10)
C5—C2—H2A115.3O3—C8—C7122.84 (9)
C3—C2—H2A115.3N2—C8—C7116.33 (9)
C4—C3—C289.61 (9)O4—C9—N2119.20 (10)
C4—C3—H3A113.7O4—C9—C10124.80 (10)
C2—C3—H3A113.7N2—C9—C10116.00 (9)
C4—C3—H3B113.7C9—C10—C11112.47 (9)
C2—C3—H3B113.7C9—C10—H10A109.1
H3A—C3—H3B111.0C11—C10—H10A109.1
C3—C4—C589.58 (8)C9—C10—H10B109.1
C3—C4—H4A113.7C11—C10—H10B109.1
C5—C4—H4A113.7H10A—C10—H10B107.8
C3—C4—H4B113.7C10—C11—C7107.91 (9)
C5—C4—H4B113.7C10—C11—H11A110.1
H4A—C4—H4B111.0C7—C11—H11A110.1
C6—C5—C2104.34 (9)C10—C11—H11B110.1
C6—C5—C4112.24 (10)C7—C11—H11B110.1
C2—C5—C490.21 (9)H11A—C11—H11B108.4
C6—N1—C1—O1178.13 (10)C2—C5—C6—O2−171.68 (11)
C7—N1—C1—O1−10.65 (15)C4—C5—C6—O2−75.45 (15)
C6—N1—C1—C2−4.49 (11)C2—C5—C6—N17.10 (11)
C7—N1—C1—C2166.72 (9)C4—C5—C6—N1103.32 (11)
O1—C1—C2—C5−174.12 (11)C1—N1—C7—C8−55.34 (12)
N1—C1—C2—C58.72 (11)C6—N1—C7—C8115.01 (10)
O1—C1—C2—C389.96 (14)C1—N1—C7—C1169.19 (12)
N1—C1—C2—C3−87.20 (11)C6—N1—C7—C11−120.47 (10)
C1—C2—C3—C4115.83 (10)C9—N2—C8—O3−175.72 (9)
C5—C2—C3—C49.02 (9)C9—N2—C8—C73.25 (15)
C2—C3—C4—C5−8.93 (9)N1—C7—C8—O3−24.63 (13)
C1—C2—C5—C6−9.47 (11)C11—C7—C8—O3−151.56 (9)
C3—C2—C5—C6104.11 (9)N1—C7—C8—N2156.42 (9)
C1—C2—C5—C4−122.52 (9)C11—C7—C8—N229.49 (12)
C3—C2—C5—C4−8.94 (9)C8—N2—C9—O4174.97 (10)
C3—C4—C5—C6−96.51 (11)C8—N2—C9—C10−5.28 (15)
C3—C4—C5—C29.10 (9)O4—C9—C10—C11153.52 (11)
C1—N1—C6—O2177.01 (10)N2—C9—C10—C11−26.21 (13)
C7—N1—C6—O25.83 (16)C9—C10—C11—C756.95 (12)
C1—N1—C6—C5−1.83 (11)N1—C7—C11—C10178.27 (9)
C7—N1—C6—C5−173.01 (9)C8—C7—C11—C10−58.05 (11)
D—H···AD—HH···AD···AD—H···A
N2—H2B···O3i0.882.062.9426 (12)175
C5—H5A···O4ii1.002.523.4424 (15)153
C10—H10B···O2iii0.992.563.4228 (14)146
C11—H11B···O3ii0.992.533.5026 (13)167
C11—H11B···O1ii0.992.533.1072 (14)117
C3—H3A···O4iv0.992.523.2577 (15)131
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2B⋯O3i0.882.062.9426 (12)175
C5—H5A⋯O4ii1.002.523.4424 (15)153
C10—H10B⋯O2iii0.992.563.4228 (14)146
C11—H11B⋯O3ii0.992.533.5026 (13)167
C11—H11B⋯O1ii0.992.533.1072 (14)117
C3—H3A⋯O4iv0.992.523.2577 (15)131

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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