| Literature DB >> 21581989 |
Yousef M Hijji, Ellis Benjamin, Earl Benjamin, Ray J Butcher, Jerry P Jasinski.
Abstract
The title mol-ecule, C(11)H(12)N(2)O(4), consists of a 3-aza-bicyclo-[3.2.0]heptane group containing a nearly planar cyclo-butane ring (r.m.s. deviation of fitted atoms is 0.0609 Å), fused to a pyrrolidine ring, bonded to a 2,6-dioxopiperidine ring at the 3-position. The angle between the mean planes of the cyclo-butane and fused pyrrolidine ring is 67.6 (6)°. The dihedral angles between the mean planes of the pyrrolidine and cyclo-butane rings and the dioxopiperidine ring are 73.9 (2) and 62.4 (4)°, respectively. The pyrrolidine and dioxopiperidine rings are twisted about the 3-yl group [torsion angles = -55.0 (1) and 115.0 (1)°] in a nearly perpendicular manner. Crystal packing is influenced by extensive inter-molecular C-H⋯O and N-H⋯O inter-actions between all four carbonyl O atoms and H atoms from the cyclo-butane and dioxopiperidine rings, as well as between the N atom and an H atom from the cyclo-butane ring. In addition, weak π-ring interactions also occur between H atoms from the cyclobutane ring and the five-membered pyrrolidine ring. As a result, mol-ecules are linked into infinite chains diagonally along the [101] plane of the unit cell in an alternate inverted pattern.Entities:
Year: 2009 PMID: 21581989 PMCID: PMC2968123 DOI: 10.1107/S1600536809002839
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C11H12N2O4 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yab | Cell parameters from 4629 reflections |
| θ = 4.9–32.6° | |
| µ = 0.11 mm−1 | |
| β = 116.201 (8)° | Prism, colorless |
| 0.57 × 0.34 × 0.19 mm | |
| Oxford Diffraction Gemini diffractometer | 3496 independent reflections |
| Radiation source: fine-focus sealed tube | 2193 reflections with |
| graphite | |
| Detector resolution: 10.5081 pixels mm-1 | θmax = 32.5°, θmin = 4.9° |
| φ and ω scans | |
| Absorption correction: multi-scan ( | |
| 10798 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 3496 reflections | (Δ/σ)max < 0.001 |
| 154 parameters | Δρmax = 0.28 e Å−3 |
| 0 restraints | Δρmin = −0.25 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| O1 | 0.32277 (8) | 0.13630 (8) | 0.42230 (7) | 0.0271 (2) | |
| O2 | 0.04309 (9) | 0.50429 (9) | 0.26752 (8) | 0.0372 (2) | |
| O3 | 0.02024 (7) | 0.12103 (8) | 0.39189 (7) | 0.02458 (19) | |
| O4 | 0.16813 (8) | 0.16581 (9) | 0.83857 (8) | 0.0350 (2) | |
| N1 | 0.18201 (8) | 0.32243 (9) | 0.37104 (8) | 0.0196 (2) | |
| N2 | 0.10433 (9) | 0.14479 (9) | 0.61681 (8) | 0.0222 (2) | |
| H2B | 0.0683 | 0.0660 | 0.6195 | 0.027* | |
| C1 | 0.25634 (10) | 0.22276 (11) | 0.34235 (10) | 0.0211 (2) | |
| C2 | 0.23146 (11) | 0.24120 (12) | 0.19918 (11) | 0.0258 (3) | |
| H2A | 0.3154 | 0.2315 | 0.1827 | 0.031* | |
| C3 | 0.09860 (12) | 0.16602 (13) | 0.09668 (11) | 0.0340 (3) | |
| H3A | 0.1154 | 0.1076 | 0.0330 | 0.041* | |
| H3B | 0.0487 | 0.1164 | 0.1396 | 0.041* | |
| C4 | 0.03228 (13) | 0.30239 (14) | 0.03642 (11) | 0.0357 (3) | |
| H4A | −0.0594 | 0.3172 | 0.0355 | 0.043* | |
| H4B | 0.0281 | 0.3205 | −0.0532 | 0.043* | |
| C5 | 0.15349 (12) | 0.37539 (12) | 0.15340 (11) | 0.0278 (3) | |
| H5A | 0.2019 | 0.4464 | 0.1259 | 0.033* | |
| C6 | 0.11702 (11) | 0.41346 (11) | 0.26561 (10) | 0.0240 (2) | |
| C7 | 0.15765 (10) | 0.31947 (11) | 0.49000 (10) | 0.0190 (2) | |
| H7A | 0.0905 | 0.3931 | 0.4805 | 0.023* | |
| C8 | 0.08854 (9) | 0.18701 (11) | 0.49330 (10) | 0.0188 (2) | |
| C9 | 0.17118 (10) | 0.21274 (12) | 0.73885 (10) | 0.0234 (2) | |
| C10 | 0.24295 (11) | 0.34041 (11) | 0.73556 (10) | 0.0249 (2) | |
| H10A | 0.3260 | 0.3520 | 0.8228 | 0.030* | |
| H10B | 0.1799 | 0.4172 | 0.7239 | 0.030* | |
| C11 | 0.28713 (10) | 0.34228 (11) | 0.62276 (10) | 0.0220 (2) | |
| H11A | 0.3561 | 0.2704 | 0.6369 | 0.026* | |
| H11B | 0.3300 | 0.4300 | 0.6209 | 0.026* |
| O1 | 0.0272 (4) | 0.0236 (4) | 0.0302 (4) | 0.0056 (3) | 0.0125 (3) | 0.0028 (3) |
| O2 | 0.0488 (5) | 0.0302 (5) | 0.0331 (4) | 0.0158 (4) | 0.0185 (4) | 0.0085 (4) |
| O3 | 0.0235 (4) | 0.0233 (4) | 0.0256 (4) | −0.0044 (3) | 0.0096 (3) | −0.0028 (3) |
| O4 | 0.0448 (5) | 0.0383 (5) | 0.0276 (4) | −0.0018 (4) | 0.0211 (4) | 0.0041 (4) |
| N1 | 0.0226 (4) | 0.0176 (5) | 0.0209 (4) | 0.0009 (3) | 0.0117 (3) | 0.0022 (4) |
| N2 | 0.0252 (4) | 0.0186 (5) | 0.0252 (4) | −0.0048 (3) | 0.0134 (4) | 0.0012 (4) |
| C1 | 0.0196 (5) | 0.0198 (5) | 0.0263 (5) | −0.0028 (4) | 0.0124 (4) | −0.0009 (4) |
| C2 | 0.0295 (6) | 0.0251 (6) | 0.0279 (5) | −0.0016 (4) | 0.0174 (5) | −0.0016 (5) |
| C3 | 0.0441 (7) | 0.0330 (7) | 0.0254 (6) | −0.0064 (5) | 0.0158 (5) | −0.0041 (5) |
| C4 | 0.0385 (7) | 0.0436 (8) | 0.0218 (5) | 0.0015 (6) | 0.0103 (5) | 0.0005 (5) |
| C5 | 0.0347 (6) | 0.0256 (6) | 0.0255 (5) | −0.0027 (5) | 0.0155 (5) | 0.0034 (5) |
| C6 | 0.0265 (5) | 0.0203 (6) | 0.0238 (5) | −0.0007 (4) | 0.0098 (4) | 0.0032 (4) |
| C7 | 0.0203 (5) | 0.0170 (5) | 0.0217 (5) | 0.0004 (4) | 0.0110 (4) | 0.0008 (4) |
| C8 | 0.0156 (4) | 0.0195 (5) | 0.0224 (5) | 0.0016 (4) | 0.0093 (4) | 0.0013 (4) |
| C9 | 0.0226 (5) | 0.0247 (6) | 0.0248 (5) | 0.0025 (4) | 0.0122 (4) | 0.0012 (5) |
| C10 | 0.0294 (5) | 0.0217 (6) | 0.0225 (5) | −0.0019 (4) | 0.0105 (4) | −0.0023 (4) |
| C11 | 0.0215 (5) | 0.0193 (5) | 0.0248 (5) | −0.0030 (4) | 0.0099 (4) | −0.0014 (4) |
| O1—C1 | 1.2136 (13) | C3—H3B | 0.9900 |
| O2—C6 | 1.2080 (13) | C4—C5 | 1.5520 (16) |
| O3—C8 | 1.2253 (12) | C4—H4A | 0.9900 |
| O4—C9 | 1.2125 (13) | C4—H4B | 0.9900 |
| N1—C1 | 1.3936 (14) | C5—C6 | 1.5069 (16) |
| N1—C6 | 1.3959 (13) | C5—H5A | 1.0000 |
| N1—C7 | 1.4523 (13) | C7—C8 | 1.5191 (15) |
| N2—C8 | 1.3679 (13) | C7—C11 | 1.5298 (13) |
| N2—C9 | 1.3933 (13) | C7—H7A | 1.0000 |
| N2—H2B | 0.8800 | C9—C10 | 1.4929 (16) |
| C1—C2 | 1.4984 (15) | C10—C11 | 1.5195 (15) |
| C2—C5 | 1.5364 (17) | C10—H10A | 0.9900 |
| C2—C3 | 1.5654 (15) | C10—H10B | 0.9900 |
| C2—H2A | 1.0000 | C11—H11A | 0.9900 |
| C3—C4 | 1.5390 (18) | C11—H11B | 0.9900 |
| C3—H3A | 0.9900 | ||
| C1—N1—C6 | 113.25 (9) | C6—C5—H5A | 115.6 |
| C1—N1—C7 | 122.88 (8) | C2—C5—H5A | 115.6 |
| C6—N1—C7 | 123.25 (9) | C4—C5—H5A | 115.6 |
| C8—N2—C9 | 127.22 (9) | O2—C6—N1 | 123.98 (10) |
| C8—N2—H2B | 116.4 | O2—C6—C5 | 127.86 (10) |
| C9—N2—H2B | 116.4 | N1—C6—C5 | 108.14 (9) |
| O1—C1—N1 | 123.21 (9) | N1—C7—C8 | 108.95 (8) |
| O1—C1—C2 | 129.16 (10) | N1—C7—C11 | 114.71 (8) |
| N1—C1—C2 | 107.57 (9) | C8—C7—C11 | 110.57 (8) |
| C1—C2—C5 | 105.78 (9) | N1—C7—H7A | 107.4 |
| C1—C2—C3 | 112.87 (9) | C8—C7—H7A | 107.4 |
| C5—C2—C3 | 89.18 (8) | C11—C7—H7A | 107.4 |
| C1—C2—H2A | 115.3 | O3—C8—N2 | 120.82 (10) |
| C5—C2—H2A | 115.3 | O3—C8—C7 | 122.84 (9) |
| C3—C2—H2A | 115.3 | N2—C8—C7 | 116.33 (9) |
| C4—C3—C2 | 89.61 (9) | O4—C9—N2 | 119.20 (10) |
| C4—C3—H3A | 113.7 | O4—C9—C10 | 124.80 (10) |
| C2—C3—H3A | 113.7 | N2—C9—C10 | 116.00 (9) |
| C4—C3—H3B | 113.7 | C9—C10—C11 | 112.47 (9) |
| C2—C3—H3B | 113.7 | C9—C10—H10A | 109.1 |
| H3A—C3—H3B | 111.0 | C11—C10—H10A | 109.1 |
| C3—C4—C5 | 89.58 (8) | C9—C10—H10B | 109.1 |
| C3—C4—H4A | 113.7 | C11—C10—H10B | 109.1 |
| C5—C4—H4A | 113.7 | H10A—C10—H10B | 107.8 |
| C3—C4—H4B | 113.7 | C10—C11—C7 | 107.91 (9) |
| C5—C4—H4B | 113.7 | C10—C11—H11A | 110.1 |
| H4A—C4—H4B | 111.0 | C7—C11—H11A | 110.1 |
| C6—C5—C2 | 104.34 (9) | C10—C11—H11B | 110.1 |
| C6—C5—C4 | 112.24 (10) | C7—C11—H11B | 110.1 |
| C2—C5—C4 | 90.21 (9) | H11A—C11—H11B | 108.4 |
| C6—N1—C1—O1 | 178.13 (10) | C2—C5—C6—O2 | −171.68 (11) |
| C7—N1—C1—O1 | −10.65 (15) | C4—C5—C6—O2 | −75.45 (15) |
| C6—N1—C1—C2 | −4.49 (11) | C2—C5—C6—N1 | 7.10 (11) |
| C7—N1—C1—C2 | 166.72 (9) | C4—C5—C6—N1 | 103.32 (11) |
| O1—C1—C2—C5 | −174.12 (11) | C1—N1—C7—C8 | −55.34 (12) |
| N1—C1—C2—C5 | 8.72 (11) | C6—N1—C7—C8 | 115.01 (10) |
| O1—C1—C2—C3 | 89.96 (14) | C1—N1—C7—C11 | 69.19 (12) |
| N1—C1—C2—C3 | −87.20 (11) | C6—N1—C7—C11 | −120.47 (10) |
| C1—C2—C3—C4 | 115.83 (10) | C9—N2—C8—O3 | −175.72 (9) |
| C5—C2—C3—C4 | 9.02 (9) | C9—N2—C8—C7 | 3.25 (15) |
| C2—C3—C4—C5 | −8.93 (9) | N1—C7—C8—O3 | −24.63 (13) |
| C1—C2—C5—C6 | −9.47 (11) | C11—C7—C8—O3 | −151.56 (9) |
| C3—C2—C5—C6 | 104.11 (9) | N1—C7—C8—N2 | 156.42 (9) |
| C1—C2—C5—C4 | −122.52 (9) | C11—C7—C8—N2 | 29.49 (12) |
| C3—C2—C5—C4 | −8.94 (9) | C8—N2—C9—O4 | 174.97 (10) |
| C3—C4—C5—C6 | −96.51 (11) | C8—N2—C9—C10 | −5.28 (15) |
| C3—C4—C5—C2 | 9.10 (9) | O4—C9—C10—C11 | 153.52 (11) |
| C1—N1—C6—O2 | 177.01 (10) | N2—C9—C10—C11 | −26.21 (13) |
| C7—N1—C6—O2 | 5.83 (16) | C9—C10—C11—C7 | 56.95 (12) |
| C1—N1—C6—C5 | −1.83 (11) | N1—C7—C11—C10 | 178.27 (9) |
| C7—N1—C6—C5 | −173.01 (9) | C8—C7—C11—C10 | −58.05 (11) |
| H··· | ||||
| N2—H2B···O3i | 0.88 | 2.06 | 2.9426 (12) | 175 |
| C5—H5A···O4ii | 1.00 | 2.52 | 3.4424 (15) | 153 |
| C10—H10B···O2iii | 0.99 | 2.56 | 3.4228 (14) | 146 |
| C11—H11B···O3ii | 0.99 | 2.53 | 3.5026 (13) | 167 |
| C11—H11B···O1ii | 0.99 | 2.53 | 3.1072 (14) | 117 |
| C3—H3A···O4iv | 0.99 | 2.52 | 3.2577 (15) | 131 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N2—H2 | 0.88 | 2.06 | 2.9426 (12) | 175 |
| C5—H5 | 1.00 | 2.52 | 3.4424 (15) | 153 |
| C10—H10 | 0.99 | 2.56 | 3.4228 (14) | 146 |
| C11—H11 | 0.99 | 2.53 | 3.5026 (13) | 167 |
| C11—H11 | 0.99 | 2.53 | 3.1072 (14) | 117 |
| C3—H3 | 0.99 | 2.52 | 3.2577 (15) | 131 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .