| Literature DB >> 21581978 |
Reza Kia, Hoong-Kun Fun, Hadi Kargar.
Abstract
The title compound, C(13)H(16)N(4)O(4), is a new hydrazone. An intra-molecular N-H⋯O hydrogen bond generates a six-membered ring, producing an S(6) ring motif. The nitro groups in the ortho and para positions are almost coplanar with the benzene ring to which they are bound, making dihedral angles of 0.60 (11) and 3.18 (11)°, respectively. Pairs of inter-molecular C-H⋯O hydrogen bonds link neighbouring mol-ecules into inversion dimers with R(2) (2)(10) motifs. The crystal structure is further stabilized by inter-molecular π-π inter-actions, with a benzene centroid-to-centroid distance of 3.6601 (4) Å.Entities:
Year: 2009 PMID: 21581978 PMCID: PMC2968402 DOI: 10.1107/S1600536809002657
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C13H16N4O4 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yn | Cell parameters from 9967 reflections |
| θ = 2.7–40.2° | |
| µ = 0.11 mm−1 | |
| β = 102.351 (1)° | Plate, yellow |
| 0.51 × 0.45 × 0.08 mm | |
| Bruker SMART APEXII CCD area-detector diffractometer | 5824 independent reflections |
| Radiation source: fine-focus sealed tube | 4916 reflections with |
| graphite | |
| φ and ω scans | θmax = 35.0°, θmin = 1.7° |
| Absorption correction: multi-scan ( | |
| 26146 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 5824 reflections | (Δ/σ)max < 0.001 |
| 194 parameters | Δρmax = 0.43 e Å−3 |
| 0 restraints | Δρmin = −0.30 e Å−3 |
| Experimental. The low-temperature data was collected with the Oxford Cryosystem Cobra low-temperature attachment. |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 0.71910 (9) | −0.13041 (2) | 0.17783 (8) | 0.02285 (12) | |
| O2 | 0.81378 (8) | −0.04726 (2) | 0.11828 (8) | 0.02030 (12) | |
| O3 | 0.01157 (8) | −0.08982 (3) | 0.49098 (7) | 0.02059 (12) | |
| O4 | 0.17434 (9) | −0.16037 (2) | 0.41905 (8) | 0.02340 (13) | |
| N1 | 0.62623 (9) | 0.04321 (3) | 0.18111 (8) | 0.01434 (11) | |
| N2 | 0.58494 (9) | 0.10007 (2) | 0.19219 (8) | 0.01495 (11) | |
| N3 | 0.70085 (9) | −0.07900 (3) | 0.17430 (8) | 0.01533 (11) | |
| N4 | 0.14350 (9) | −0.10960 (3) | 0.42854 (8) | 0.01614 (12) | |
| C1 | 0.34898 (10) | 0.02454 (3) | 0.30373 (9) | 0.01400 (12) | |
| H1A | 0.3228 | 0.0638 | 0.3054 | 0.017* | |
| C2 | 0.23044 (10) | −0.01240 (3) | 0.36477 (9) | 0.01428 (12) | |
| H2A | 0.1231 | 0.0012 | 0.4077 | 0.017* | |
| C3 | 0.26847 (10) | −0.07040 (3) | 0.36355 (8) | 0.01365 (12) | |
| C4 | 0.42249 (10) | −0.09135 (3) | 0.30138 (8) | 0.01385 (12) | |
| H4A | 0.4470 | −0.1307 | 0.3017 | 0.017* | |
| C5 | 0.54189 (9) | −0.05386 (3) | 0.23798 (8) | 0.01284 (11) | |
| C6 | 0.51047 (9) | 0.00541 (3) | 0.23793 (8) | 0.01249 (11) | |
| C7 | 0.71332 (10) | 0.13537 (3) | 0.16026 (9) | 0.01369 (12) | |
| C8 | 0.90306 (10) | 0.11873 (3) | 0.11327 (9) | 0.01459 (12) | |
| H8A | 0.8734 | 0.1078 | −0.0056 | 0.018* | |
| H8B | 0.9549 | 0.0849 | 0.1784 | 0.018* | |
| C9 | 1.06529 (10) | 0.16349 (3) | 0.13962 (9) | 0.01612 (13) | |
| H9A | 1.0778 | 0.1796 | 0.2524 | 0.019* | |
| H9B | 1.1911 | 0.1447 | 0.1362 | 0.019* | |
| C10 | 1.03488 (12) | 0.21200 (3) | 0.01374 (11) | 0.02085 (15) | |
| H10A | 1.1629 | 0.2307 | 0.0187 | 0.025* | |
| H10B | 0.9920 | 0.1959 | −0.0993 | 0.025* | |
| C11 | 0.88606 (11) | 0.25661 (3) | 0.03869 (10) | 0.01808 (13) | |
| H11A | 0.9336 | 0.2747 | 0.1483 | 0.022* | |
| H11B | 0.8801 | 0.2860 | −0.0475 | 0.022* | |
| C12 | 0.67896 (11) | 0.23445 (3) | 0.03073 (10) | 0.01820 (14) | |
| H12A | 0.6359 | 0.2131 | −0.0741 | 0.022* | |
| H12B | 0.5890 | 0.2669 | 0.0276 | 0.022* | |
| C13 | 0.66109 (11) | 0.19625 (3) | 0.17764 (10) | 0.01816 (13) | |
| H13A | 0.7471 | 0.2115 | 0.2797 | 0.022* | |
| H13B | 0.5242 | 0.1982 | 0.1930 | 0.022* | |
| H1N1 | 0.727 (2) | 0.0296 (6) | 0.1432 (17) | 0.036 (3)* |
| O1 | 0.0256 (3) | 0.0139 (2) | 0.0313 (3) | 0.0047 (2) | 0.0112 (2) | −0.0015 (2) |
| O2 | 0.0173 (2) | 0.0201 (2) | 0.0264 (3) | −0.00068 (19) | 0.0112 (2) | −0.0007 (2) |
| O3 | 0.0189 (2) | 0.0239 (3) | 0.0216 (3) | −0.0013 (2) | 0.0100 (2) | 0.0012 (2) |
| O4 | 0.0262 (3) | 0.0139 (2) | 0.0317 (3) | −0.0030 (2) | 0.0096 (2) | 0.0025 (2) |
| N1 | 0.0135 (2) | 0.0119 (2) | 0.0186 (3) | −0.00005 (18) | 0.00577 (19) | 0.00008 (19) |
| N2 | 0.0142 (2) | 0.0117 (2) | 0.0198 (3) | 0.00064 (18) | 0.0055 (2) | 0.0012 (2) |
| N3 | 0.0145 (2) | 0.0153 (3) | 0.0166 (3) | 0.00157 (19) | 0.00412 (19) | −0.0017 (2) |
| N4 | 0.0161 (3) | 0.0163 (3) | 0.0162 (3) | −0.0022 (2) | 0.0037 (2) | 0.0015 (2) |
| C1 | 0.0132 (3) | 0.0127 (3) | 0.0166 (3) | 0.0010 (2) | 0.0045 (2) | 0.0005 (2) |
| C2 | 0.0133 (3) | 0.0144 (3) | 0.0158 (3) | 0.0007 (2) | 0.0045 (2) | 0.0008 (2) |
| C3 | 0.0139 (3) | 0.0132 (3) | 0.0141 (3) | −0.0011 (2) | 0.0036 (2) | 0.0009 (2) |
| C4 | 0.0145 (3) | 0.0128 (3) | 0.0140 (3) | −0.0004 (2) | 0.0025 (2) | −0.0003 (2) |
| C5 | 0.0122 (3) | 0.0128 (3) | 0.0138 (3) | 0.0008 (2) | 0.0036 (2) | −0.0014 (2) |
| C6 | 0.0119 (3) | 0.0127 (3) | 0.0127 (3) | −0.00011 (19) | 0.00235 (19) | 0.0000 (2) |
| C7 | 0.0131 (3) | 0.0125 (3) | 0.0160 (3) | 0.0006 (2) | 0.0043 (2) | 0.0009 (2) |
| C8 | 0.0133 (3) | 0.0130 (3) | 0.0184 (3) | 0.0002 (2) | 0.0054 (2) | −0.0004 (2) |
| C9 | 0.0125 (3) | 0.0149 (3) | 0.0210 (3) | −0.0004 (2) | 0.0037 (2) | 0.0026 (2) |
| C10 | 0.0200 (3) | 0.0173 (3) | 0.0284 (4) | 0.0029 (2) | 0.0121 (3) | 0.0069 (3) |
| C11 | 0.0199 (3) | 0.0137 (3) | 0.0218 (3) | 0.0009 (2) | 0.0071 (2) | 0.0032 (2) |
| C12 | 0.0170 (3) | 0.0142 (3) | 0.0233 (3) | 0.0029 (2) | 0.0040 (2) | 0.0029 (2) |
| C13 | 0.0191 (3) | 0.0128 (3) | 0.0256 (3) | 0.0016 (2) | 0.0115 (3) | 0.0003 (2) |
| O1—N3 | 1.2265 (8) | C7—C13 | 1.5044 (10) |
| O2—N3 | 1.2471 (8) | C7—C8 | 1.5080 (10) |
| O3—N4 | 1.2380 (9) | C8—C9 | 1.5330 (10) |
| O4—N4 | 1.2296 (8) | C8—H8A | 0.9900 |
| N1—C6 | 1.3551 (9) | C8—H8B | 0.9900 |
| N1—N2 | 1.3871 (8) | C9—C10 | 1.5328 (10) |
| N1—H1N1 | 0.887 (14) | C9—H9A | 0.9900 |
| N2—C7 | 1.2934 (9) | C9—H9B | 0.9900 |
| N3—C5 | 1.4517 (9) | C10—C11 | 1.5269 (11) |
| N4—C3 | 1.4525 (9) | C10—H10A | 0.9900 |
| C1—C2 | 1.3717 (10) | C10—H10B | 0.9900 |
| C1—C6 | 1.4241 (10) | C11—C12 | 1.5249 (11) |
| C1—H1A | 0.9500 | C11—H11A | 0.9900 |
| C2—C3 | 1.4026 (10) | C11—H11B | 0.9900 |
| C2—H2A | 0.9500 | C12—C13 | 1.5373 (11) |
| C3—C4 | 1.3772 (10) | C12—H12A | 0.9900 |
| C4—C5 | 1.3938 (10) | C12—H12B | 0.9900 |
| C4—H4A | 0.9500 | C13—H13A | 0.9900 |
| C5—C6 | 1.4237 (9) | C13—H13B | 0.9900 |
| C6—N1—N2 | 118.31 (6) | C7—C8—H8B | 108.2 |
| C6—N1—H1N1 | 117.1 (9) | C9—C8—H8B | 108.2 |
| N2—N1—H1N1 | 124.6 (9) | H8A—C8—H8B | 107.4 |
| C7—N2—N1 | 117.04 (6) | C10—C9—C8 | 115.71 (6) |
| O1—N3—O2 | 122.64 (6) | C10—C9—H9A | 108.4 |
| O1—N3—C5 | 118.93 (6) | C8—C9—H9A | 108.4 |
| O2—N3—C5 | 118.43 (6) | C10—C9—H9B | 108.4 |
| O4—N4—O3 | 123.61 (7) | C8—C9—H9B | 108.4 |
| O4—N4—C3 | 118.53 (6) | H9A—C9—H9B | 107.4 |
| O3—N4—C3 | 117.86 (6) | C11—C10—C9 | 115.46 (6) |
| C2—C1—C6 | 121.51 (6) | C11—C10—H10A | 108.4 |
| C2—C1—H1A | 119.2 | C9—C10—H10A | 108.4 |
| C6—C1—H1A | 119.2 | C11—C10—H10B | 108.4 |
| C1—C2—C3 | 119.69 (6) | C9—C10—H10B | 108.4 |
| C1—C2—H2A | 120.2 | H10A—C10—H10B | 107.5 |
| C3—C2—H2A | 120.2 | C12—C11—C10 | 114.80 (6) |
| C4—C3—C2 | 121.37 (6) | C12—C11—H11A | 108.6 |
| C4—C3—N4 | 118.83 (6) | C10—C11—H11A | 108.6 |
| C2—C3—N4 | 119.79 (6) | C12—C11—H11B | 108.6 |
| C3—C4—C5 | 118.95 (6) | C10—C11—H11B | 108.6 |
| C3—C4—H4A | 120.5 | H11A—C11—H11B | 107.5 |
| C5—C4—H4A | 120.5 | C11—C12—C13 | 113.89 (6) |
| C4—C5—C6 | 121.79 (6) | C11—C12—H12A | 108.8 |
| C4—C5—N3 | 115.84 (6) | C13—C12—H12A | 108.8 |
| C6—C5—N3 | 122.37 (6) | C11—C12—H12B | 108.8 |
| N1—C6—C5 | 123.46 (6) | C13—C12—H12B | 108.8 |
| N1—C6—C1 | 119.84 (6) | H12A—C12—H12B | 107.7 |
| C5—C6—C1 | 116.69 (6) | C7—C13—C12 | 115.46 (6) |
| N2—C7—C13 | 114.26 (6) | C7—C13—H13A | 108.4 |
| N2—C7—C8 | 124.44 (6) | C12—C13—H13A | 108.4 |
| C13—C7—C8 | 121.29 (6) | C7—C13—H13B | 108.4 |
| C7—C8—C9 | 116.32 (6) | C12—C13—H13B | 108.4 |
| C7—C8—H8A | 108.2 | H13A—C13—H13B | 107.5 |
| C9—C8—H8A | 108.2 | ||
| C6—N1—N2—C7 | 170.12 (6) | C4—C5—C6—N1 | 178.35 (6) |
| C6—C1—C2—C3 | 0.28 (10) | N3—C5—C6—N1 | −0.87 (10) |
| C1—C2—C3—C4 | −0.32 (10) | C4—C5—C6—C1 | −0.89 (9) |
| C1—C2—C3—N4 | 179.83 (6) | N3—C5—C6—C1 | 179.89 (6) |
| O4—N4—C3—C4 | −3.17 (10) | C2—C1—C6—N1 | −178.97 (6) |
| O3—N4—C3—C4 | 176.68 (6) | C2—C1—C6—C5 | 0.30 (10) |
| O4—N4—C3—C2 | 176.69 (7) | N1—N2—C7—C13 | −178.94 (6) |
| O3—N4—C3—C2 | −3.46 (10) | N1—N2—C7—C8 | −0.34 (10) |
| C2—C3—C4—C5 | −0.26 (10) | N2—C7—C8—C9 | −159.23 (7) |
| N4—C3—C4—C5 | 179.60 (6) | C13—C7—C8—C9 | 19.27 (10) |
| C3—C4—C5—C6 | 0.88 (10) | C7—C8—C9—C10 | −74.34 (8) |
| C3—C4—C5—N3 | −179.85 (6) | C8—C9—C10—C11 | 76.57 (9) |
| O1—N3—C5—C4 | 0.89 (9) | C9—C10—C11—C12 | −59.37 (9) |
| O2—N3—C5—C4 | −179.00 (6) | C10—C11—C12—C13 | 68.70 (9) |
| O1—N3—C5—C6 | −179.84 (6) | N2—C7—C13—C12 | −131.11 (7) |
| O2—N3—C5—C6 | 0.26 (10) | C8—C7—C13—C12 | 50.25 (9) |
| N2—N1—C6—C5 | −177.98 (6) | C11—C12—C13—C7 | −84.10 (8) |
| N2—N1—C6—C1 | 1.24 (10) |
| H··· | ||||
| N1—H1N1···O2 | 0.888 (14) | 1.947 (14) | 2.6225 (9) | 131.7 (12) |
| C2—H2A···O3i | 0.95 | 2.52 | 3.3165 (10) | 142 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1N1⋯O2 | 0.888 (14) | 1.947 (14) | 2.6225 (9) | 131.7 (12) |
| C2—H2 | 0.95 | 2.52 | 3.3165 (10) | 142 |
Symmetry code: (i) .