Literature DB >> 21581978

N-Cyclo-heptyl-idene-N'-(2,4-dinitro-phenyl)hydrazine.

Reza Kia, Hoong-Kun Fun, Hadi Kargar.   

Abstract

The title compound, C(13)H(16)N(4)O(4), is a new hydrazone. An intra-molecular N-H⋯O hydrogen bond generates a six-membered ring, producing an S(6) ring motif. The nitro groups in the ortho and para positions are almost coplanar with the benzene ring to which they are bound, making dihedral angles of 0.60 (11) and 3.18 (11)°, respectively. Pairs of inter-molecular C-H⋯O hydrogen bonds link neighbouring mol-ecules into inversion dimers with R(2) (2)(10) motifs. The crystal structure is further stabilized by inter-molecular π-π inter-actions, with a benzene centroid-to-centroid distance of 3.6601 (4) Å.

Entities:  

Year:  2009        PMID: 21581978      PMCID: PMC2968402          DOI: 10.1107/S1600536809002657

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For details of hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For related literature on the applications of hydrazone, see, for example: Niknam et al., (2005 ▶); Guillaumont & Nakamura (2000 ▶); Raj & Kurup (2006 ▶); Okabe et al. (1993 ▶).

Experimental

Crystal data

C13H16N4O4 M = 292.30 Monoclinic, a = 6.9721 (1) Å b = 23.7359 (5) Å c = 8.2274 (2) Å β = 102.351 (1)° V = 1330.03 (5) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 100.0 (1) K 0.51 × 0.45 × 0.08 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.946, T max = 0.991 26146 measured reflections 5824 independent reflections 4916 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.113 S = 1.04 5824 reflections 194 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.43 e Å−3 Δρmin = −0.30 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2003 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809002657/kj2114sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809002657/kj2114Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H16N4O4F(000) = 616
Mr = 292.30Dx = 1.460 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 9967 reflections
a = 6.9721 (1) Åθ = 2.7–40.2°
b = 23.7359 (5) ŵ = 0.11 mm1
c = 8.2274 (2) ÅT = 100 K
β = 102.351 (1)°Plate, yellow
V = 1330.03 (5) Å30.51 × 0.45 × 0.08 mm
Z = 4
Bruker SMART APEXII CCD area-detector diffractometer5824 independent reflections
Radiation source: fine-focus sealed tube4916 reflections with I > 2σ(I)
graphiteRint = 0.026
φ and ω scansθmax = 35.0°, θmin = 1.7°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −11→11
Tmin = 0.946, Tmax = 0.991k = −38→38
26146 measured reflectionsl = −12→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.113H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0637P)2 + 0.2167P] where P = (Fo2 + 2Fc2)/3
5824 reflections(Δ/σ)max < 0.001
194 parametersΔρmax = 0.43 e Å3
0 restraintsΔρmin = −0.30 e Å3
Experimental. The low-temperature data was collected with the Oxford Cryosystem Cobra low-temperature attachment.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.71910 (9)−0.13041 (2)0.17783 (8)0.02285 (12)
O20.81378 (8)−0.04726 (2)0.11828 (8)0.02030 (12)
O30.01157 (8)−0.08982 (3)0.49098 (7)0.02059 (12)
O40.17434 (9)−0.16037 (2)0.41905 (8)0.02340 (13)
N10.62623 (9)0.04321 (3)0.18111 (8)0.01434 (11)
N20.58494 (9)0.10007 (2)0.19219 (8)0.01495 (11)
N30.70085 (9)−0.07900 (3)0.17430 (8)0.01533 (11)
N40.14350 (9)−0.10960 (3)0.42854 (8)0.01614 (12)
C10.34898 (10)0.02454 (3)0.30373 (9)0.01400 (12)
H1A0.32280.06380.30540.017*
C20.23044 (10)−0.01240 (3)0.36477 (9)0.01428 (12)
H2A0.12310.00120.40770.017*
C30.26847 (10)−0.07040 (3)0.36355 (8)0.01365 (12)
C40.42249 (10)−0.09135 (3)0.30138 (8)0.01385 (12)
H4A0.4470−0.13070.30170.017*
C50.54189 (9)−0.05386 (3)0.23798 (8)0.01284 (11)
C60.51047 (9)0.00541 (3)0.23793 (8)0.01249 (11)
C70.71332 (10)0.13537 (3)0.16026 (9)0.01369 (12)
C80.90306 (10)0.11873 (3)0.11327 (9)0.01459 (12)
H8A0.87340.1078−0.00560.018*
H8B0.95490.08490.17840.018*
C91.06529 (10)0.16349 (3)0.13962 (9)0.01612 (13)
H9A1.07780.17960.25240.019*
H9B1.19110.14470.13620.019*
C101.03488 (12)0.21200 (3)0.01374 (11)0.02085 (15)
H10A1.16290.23070.01870.025*
H10B0.99200.1959−0.09930.025*
C110.88606 (11)0.25661 (3)0.03869 (10)0.01808 (13)
H11A0.93360.27470.14830.022*
H11B0.88010.2860−0.04750.022*
C120.67896 (11)0.23445 (3)0.03073 (10)0.01820 (14)
H12A0.63590.2131−0.07410.022*
H12B0.58900.26690.02760.022*
C130.66109 (11)0.19625 (3)0.17764 (10)0.01816 (13)
H13A0.74710.21150.27970.022*
H13B0.52420.19820.19300.022*
H1N10.727 (2)0.0296 (6)0.1432 (17)0.036 (3)*
U11U22U33U12U13U23
O10.0256 (3)0.0139 (2)0.0313 (3)0.0047 (2)0.0112 (2)−0.0015 (2)
O20.0173 (2)0.0201 (2)0.0264 (3)−0.00068 (19)0.0112 (2)−0.0007 (2)
O30.0189 (2)0.0239 (3)0.0216 (3)−0.0013 (2)0.0100 (2)0.0012 (2)
O40.0262 (3)0.0139 (2)0.0317 (3)−0.0030 (2)0.0096 (2)0.0025 (2)
N10.0135 (2)0.0119 (2)0.0186 (3)−0.00005 (18)0.00577 (19)0.00008 (19)
N20.0142 (2)0.0117 (2)0.0198 (3)0.00064 (18)0.0055 (2)0.0012 (2)
N30.0145 (2)0.0153 (3)0.0166 (3)0.00157 (19)0.00412 (19)−0.0017 (2)
N40.0161 (3)0.0163 (3)0.0162 (3)−0.0022 (2)0.0037 (2)0.0015 (2)
C10.0132 (3)0.0127 (3)0.0166 (3)0.0010 (2)0.0045 (2)0.0005 (2)
C20.0133 (3)0.0144 (3)0.0158 (3)0.0007 (2)0.0045 (2)0.0008 (2)
C30.0139 (3)0.0132 (3)0.0141 (3)−0.0011 (2)0.0036 (2)0.0009 (2)
C40.0145 (3)0.0128 (3)0.0140 (3)−0.0004 (2)0.0025 (2)−0.0003 (2)
C50.0122 (3)0.0128 (3)0.0138 (3)0.0008 (2)0.0036 (2)−0.0014 (2)
C60.0119 (3)0.0127 (3)0.0127 (3)−0.00011 (19)0.00235 (19)0.0000 (2)
C70.0131 (3)0.0125 (3)0.0160 (3)0.0006 (2)0.0043 (2)0.0009 (2)
C80.0133 (3)0.0130 (3)0.0184 (3)0.0002 (2)0.0054 (2)−0.0004 (2)
C90.0125 (3)0.0149 (3)0.0210 (3)−0.0004 (2)0.0037 (2)0.0026 (2)
C100.0200 (3)0.0173 (3)0.0284 (4)0.0029 (2)0.0121 (3)0.0069 (3)
C110.0199 (3)0.0137 (3)0.0218 (3)0.0009 (2)0.0071 (2)0.0032 (2)
C120.0170 (3)0.0142 (3)0.0233 (3)0.0029 (2)0.0040 (2)0.0029 (2)
C130.0191 (3)0.0128 (3)0.0256 (3)0.0016 (2)0.0115 (3)0.0003 (2)
O1—N31.2265 (8)C7—C131.5044 (10)
O2—N31.2471 (8)C7—C81.5080 (10)
O3—N41.2380 (9)C8—C91.5330 (10)
O4—N41.2296 (8)C8—H8A0.9900
N1—C61.3551 (9)C8—H8B0.9900
N1—N21.3871 (8)C9—C101.5328 (10)
N1—H1N10.887 (14)C9—H9A0.9900
N2—C71.2934 (9)C9—H9B0.9900
N3—C51.4517 (9)C10—C111.5269 (11)
N4—C31.4525 (9)C10—H10A0.9900
C1—C21.3717 (10)C10—H10B0.9900
C1—C61.4241 (10)C11—C121.5249 (11)
C1—H1A0.9500C11—H11A0.9900
C2—C31.4026 (10)C11—H11B0.9900
C2—H2A0.9500C12—C131.5373 (11)
C3—C41.3772 (10)C12—H12A0.9900
C4—C51.3938 (10)C12—H12B0.9900
C4—H4A0.9500C13—H13A0.9900
C5—C61.4237 (9)C13—H13B0.9900
C6—N1—N2118.31 (6)C7—C8—H8B108.2
C6—N1—H1N1117.1 (9)C9—C8—H8B108.2
N2—N1—H1N1124.6 (9)H8A—C8—H8B107.4
C7—N2—N1117.04 (6)C10—C9—C8115.71 (6)
O1—N3—O2122.64 (6)C10—C9—H9A108.4
O1—N3—C5118.93 (6)C8—C9—H9A108.4
O2—N3—C5118.43 (6)C10—C9—H9B108.4
O4—N4—O3123.61 (7)C8—C9—H9B108.4
O4—N4—C3118.53 (6)H9A—C9—H9B107.4
O3—N4—C3117.86 (6)C11—C10—C9115.46 (6)
C2—C1—C6121.51 (6)C11—C10—H10A108.4
C2—C1—H1A119.2C9—C10—H10A108.4
C6—C1—H1A119.2C11—C10—H10B108.4
C1—C2—C3119.69 (6)C9—C10—H10B108.4
C1—C2—H2A120.2H10A—C10—H10B107.5
C3—C2—H2A120.2C12—C11—C10114.80 (6)
C4—C3—C2121.37 (6)C12—C11—H11A108.6
C4—C3—N4118.83 (6)C10—C11—H11A108.6
C2—C3—N4119.79 (6)C12—C11—H11B108.6
C3—C4—C5118.95 (6)C10—C11—H11B108.6
C3—C4—H4A120.5H11A—C11—H11B107.5
C5—C4—H4A120.5C11—C12—C13113.89 (6)
C4—C5—C6121.79 (6)C11—C12—H12A108.8
C4—C5—N3115.84 (6)C13—C12—H12A108.8
C6—C5—N3122.37 (6)C11—C12—H12B108.8
N1—C6—C5123.46 (6)C13—C12—H12B108.8
N1—C6—C1119.84 (6)H12A—C12—H12B107.7
C5—C6—C1116.69 (6)C7—C13—C12115.46 (6)
N2—C7—C13114.26 (6)C7—C13—H13A108.4
N2—C7—C8124.44 (6)C12—C13—H13A108.4
C13—C7—C8121.29 (6)C7—C13—H13B108.4
C7—C8—C9116.32 (6)C12—C13—H13B108.4
C7—C8—H8A108.2H13A—C13—H13B107.5
C9—C8—H8A108.2
C6—N1—N2—C7170.12 (6)C4—C5—C6—N1178.35 (6)
C6—C1—C2—C30.28 (10)N3—C5—C6—N1−0.87 (10)
C1—C2—C3—C4−0.32 (10)C4—C5—C6—C1−0.89 (9)
C1—C2—C3—N4179.83 (6)N3—C5—C6—C1179.89 (6)
O4—N4—C3—C4−3.17 (10)C2—C1—C6—N1−178.97 (6)
O3—N4—C3—C4176.68 (6)C2—C1—C6—C50.30 (10)
O4—N4—C3—C2176.69 (7)N1—N2—C7—C13−178.94 (6)
O3—N4—C3—C2−3.46 (10)N1—N2—C7—C8−0.34 (10)
C2—C3—C4—C5−0.26 (10)N2—C7—C8—C9−159.23 (7)
N4—C3—C4—C5179.60 (6)C13—C7—C8—C919.27 (10)
C3—C4—C5—C60.88 (10)C7—C8—C9—C10−74.34 (8)
C3—C4—C5—N3−179.85 (6)C8—C9—C10—C1176.57 (9)
O1—N3—C5—C40.89 (9)C9—C10—C11—C12−59.37 (9)
O2—N3—C5—C4−179.00 (6)C10—C11—C12—C1368.70 (9)
O1—N3—C5—C6−179.84 (6)N2—C7—C13—C12−131.11 (7)
O2—N3—C5—C60.26 (10)C8—C7—C13—C1250.25 (9)
N2—N1—C6—C5−177.98 (6)C11—C12—C13—C7−84.10 (8)
N2—N1—C6—C11.24 (10)
D—H···AD—HH···AD···AD—H···A
N1—H1N1···O20.888 (14)1.947 (14)2.6225 (9)131.7 (12)
C2—H2A···O3i0.952.523.3165 (10)142
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N1⋯O20.888 (14)1.947 (14)2.6225 (9)131.7 (12)
C2—H2A⋯O3i0.952.523.3165 (10)142

Symmetry code: (i) .

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