Literature DB >> 21581965

6-[3-(2,4-Dimethyl-anilino)-2-hydroxy-prop-oxy]-1,8-dihydr-oxy-3-methyl-9,10-dihydro-anthracene-9,10-dione.

Xing-Po Wang, Wenfang Xu.   

Abstract

In the title compound, C(26)H(25)NO(6), the anthraquinone ring system forms a dihedral angle of 15.5 (1)° with the benzene ring of the dimethyl-aniline group. Intra-molecular O-H⋯O hydrogen bonding is observed between the carbonyl and two hydroxyl groups. The mol-ecules are linked into a ribbon-like structure along the [100] direction by O-H⋯N and C-H⋯O hydrogen bonds. The crystal used was twinned via a 180° rotation about [100]. The ratio of the two twin components is 0.947 (1):0.053 (1).

Entities:  

Year:  2009        PMID: 21581965      PMCID: PMC2968285          DOI: 10.1107/S1600536809002347

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological properties of emodin and its derivatives, see: Srinivas et al. (2003 ▶); Teich et al., 2004 ▶; Wang & Xu (2005 ▶). For a related structure, see: Wang et al. (2006 ▶).

Experimental

Crystal data

C26H25NO6 M = 447.47 Monoclinic, a = 5.0668 (3) Å b = 29.7496 (17) Å c = 14.2201 (8) Å β = 90.530 (4)° V = 2143.4 (2) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 295 (2) K 0.32 × 0.14 × 0.04 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker,2005 ▶) T min = 0.969, T max = 0.996 17905 measured reflections 4939 independent reflections 2028 reflections with I > 2σ(I) R int = 0.072

Refinement

R[F 2 > 2σ(F 2)] = 0.072 wR(F 2) = 0.232 S = 0.99 4939 reflections 305 parameters 1 restraint H-atom parameters constrained Δρmax = 0.65 e Å−3 Δρmin = −0.28 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809002347/ci2754sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809002347/ci2754Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C26H25NO6F(000) = 944
Mr = 447.47Dx = 1.387 Mg m3
Monoclinic, P21/cMelting point = 469–470 K
Hall symbol: -P 2ybcMo Kα radiation, λ = 0.71073 Å
a = 5.0668 (3) ÅCell parameters from 1559 reflections
b = 29.7496 (17) Åθ = 2.5–19.5°
c = 14.2201 (8) ŵ = 0.10 mm1
β = 90.530 (4)°T = 295 K
V = 2143.4 (2) Å3Plate, yellow
Z = 40.32 × 0.14 × 0.04 mm
Bruker APEXII CCD area-detector diffractometer4939 independent reflections
Radiation source: fine-focus sealed tube2028 reflections with I > 2σ(I)
graphiteRint = 0.072
φ and ω scansθmax = 27.6°, θmin = 0.7°
Absorption correction: multi-scan (SADABS; Bruker,2005)h = −5→6
Tmin = 0.969, Tmax = 0.996k = −38→30
17905 measured reflectionsl = −13→18
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.072Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.232H-atom parameters constrained
S = 0.99w = 1/[σ2(Fo2) + (0.11P)2] where P = (Fo2 + 2Fc2)/3
4939 reflections(Δ/σ)max = 0.001
305 parametersΔρmax = 0.65 e Å3
1 restraintΔρmin = −0.28 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C1−1.0367 (9)1.13766 (15)0.5591 (3)0.0676 (13)
H2D−1.14271.16380.54690.101*
H1B−0.91291.14400.60880.101*
H1C−1.14841.11320.57740.101*
C2−0.8902 (8)1.12513 (13)0.4719 (3)0.0524 (10)
C3−0.9564 (8)1.14342 (13)0.3858 (3)0.0600 (11)
H3−1.09141.16450.38240.072*
C4−0.8269 (8)1.13118 (13)0.3037 (3)0.0535 (11)
C5−0.6234 (7)1.09890 (12)0.3064 (2)0.0454 (9)
C6−0.5564 (7)1.08053 (12)0.3954 (2)0.0431 (9)
C7−0.6889 (7)1.09336 (13)0.4748 (3)0.0507 (10)
H7−0.64261.08040.53220.061*
C8−0.4926 (7)1.08413 (12)0.2218 (3)0.0453 (10)
C9−0.2884 (7)1.05060 (12)0.2275 (2)0.0431 (9)
C10−0.2116 (7)1.03164 (12)0.3150 (2)0.0409 (9)
C11−0.3414 (7)1.04653 (13)0.4030 (3)0.0461 (10)
C12−0.1578 (8)1.03526 (13)0.1470 (2)0.0497 (10)
C130.0369 (8)1.00294 (13)0.1525 (3)0.0516 (10)
H130.12150.99330.09830.062*
C140.1057 (7)0.98486 (12)0.2389 (3)0.0457 (9)
C15−0.0191 (7)0.99984 (12)0.3210 (2)0.0448 (9)
H150.02980.98810.37920.054*
C160.4139 (8)0.93266 (13)0.1716 (3)0.0549 (11)
H16A0.51210.95520.13700.066*
H16B0.28150.91980.13000.066*
C170.5967 (8)0.89666 (13)0.2081 (3)0.0526 (10)
H170.72910.91110.24870.063*
C180.7400 (8)0.87514 (14)0.1259 (3)0.0536 (11)
H18A0.61290.86240.08200.064*
H18B0.84210.89770.09300.064*
C191.0724 (7)0.81541 (12)0.1014 (3)0.0465 (10)
C201.1235 (8)0.82906 (14)0.0102 (3)0.0530 (10)
H201.03730.8541−0.01450.064*
C211.3044 (8)0.80537 (15)−0.0453 (3)0.0572 (11)
H211.33580.8149−0.10640.069*
C221.4366 (8)0.76818 (15)−0.0109 (3)0.0561 (11)
C231.6400 (9)0.74387 (17)−0.0682 (3)0.0833 (15)
H23A1.78960.7367−0.02900.125*
H23B1.69510.7627−0.11920.125*
H23C1.56500.7166−0.09290.125*
C241.3773 (8)0.75469 (13)0.0789 (3)0.0596 (12)
H241.46170.72930.10250.072*
C251.1997 (8)0.77663 (13)0.1365 (3)0.0521 (10)
C261.1395 (11)0.76031 (16)0.2335 (3)0.0799 (15)
H26A1.17200.78400.27790.120*
H26B1.25030.73510.24830.120*
H26C0.95770.75140.23640.120*
N10.9123 (7)0.84036 (11)0.1610 (2)0.0588 (9)
H1E0.91650.83490.22040.071*
O1−0.9091 (7)1.15045 (11)0.2223 (2)0.0767 (9)
H1D−0.83541.13830.17790.115*
O2−0.5598 (6)1.10083 (9)0.14266 (17)0.0608 (8)
O3−0.2174 (6)1.05188 (11)0.06045 (18)0.0716 (9)
H3A−0.33651.07040.06480.107*
O4−0.2717 (6)1.03226 (10)0.47874 (18)0.0662 (9)
O50.2908 (5)0.95260 (9)0.25280 (17)0.0572 (8)
O60.4665 (6)0.86440 (11)0.2613 (2)0.0766 (9)
H60.32210.85900.23720.115*
U11U22U33U12U13U23
C10.072 (3)0.069 (3)0.062 (3)0.006 (2)0.010 (2)−0.009 (2)
C20.053 (3)0.053 (3)0.051 (3)0.000 (2)0.003 (2)−0.006 (2)
C30.065 (3)0.050 (3)0.066 (3)0.016 (2)0.008 (2)−0.004 (2)
C40.063 (3)0.045 (2)0.052 (3)0.005 (2)−0.001 (2)0.0046 (19)
C50.047 (2)0.043 (2)0.047 (2)0.0015 (19)−0.0015 (18)0.0008 (18)
C60.046 (2)0.046 (2)0.038 (2)−0.0011 (18)−0.0002 (17)−0.0030 (17)
C70.055 (2)0.056 (3)0.040 (2)0.000 (2)0.0018 (19)0.0014 (18)
C80.051 (2)0.041 (2)0.045 (2)−0.0038 (19)0.0000 (18)0.0027 (18)
C90.051 (2)0.038 (2)0.040 (2)−0.0008 (18)0.0012 (18)0.0020 (17)
C100.043 (2)0.039 (2)0.041 (2)−0.0025 (18)0.0010 (17)0.0015 (17)
C110.044 (2)0.052 (2)0.042 (2)0.0003 (19)−0.0010 (18)0.0057 (19)
C120.061 (3)0.050 (2)0.038 (2)0.002 (2)0.0015 (19)0.0049 (18)
C130.060 (3)0.055 (3)0.040 (2)0.004 (2)0.0061 (19)−0.0042 (19)
C140.049 (2)0.042 (2)0.046 (2)0.002 (2)−0.0009 (18)0.0017 (18)
C150.050 (2)0.047 (2)0.037 (2)0.0029 (19)−0.0004 (17)0.0010 (17)
C160.053 (2)0.056 (3)0.055 (3)0.005 (2)0.006 (2)−0.006 (2)
C170.053 (2)0.048 (2)0.057 (2)0.004 (2)0.011 (2)−0.0007 (19)
C180.050 (2)0.057 (3)0.053 (3)0.005 (2)0.001 (2)−0.0040 (19)
C190.049 (2)0.046 (2)0.045 (2)−0.0026 (19)0.0024 (18)−0.0039 (18)
C200.055 (2)0.055 (3)0.049 (2)0.001 (2)0.004 (2)0.0003 (19)
C210.063 (3)0.066 (3)0.042 (2)−0.005 (2)0.011 (2)−0.006 (2)
C220.050 (2)0.058 (3)0.060 (3)−0.002 (2)0.008 (2)−0.009 (2)
C230.071 (3)0.081 (4)0.099 (4)0.008 (3)0.020 (3)−0.015 (3)
C240.064 (3)0.040 (2)0.074 (3)0.005 (2)0.000 (2)−0.003 (2)
C250.062 (3)0.042 (2)0.052 (2)−0.002 (2)0.000 (2)0.0045 (19)
C260.118 (4)0.062 (3)0.059 (3)0.002 (3)0.005 (3)0.014 (2)
N10.073 (2)0.064 (2)0.0389 (18)0.015 (2)0.0049 (17)−0.0037 (16)
O10.094 (2)0.077 (2)0.0592 (19)0.0371 (19)−0.0034 (18)0.0122 (17)
O20.080 (2)0.0632 (19)0.0397 (16)0.0175 (16)−0.0012 (14)0.0092 (13)
O30.096 (3)0.081 (2)0.0376 (16)0.0287 (18)0.0062 (15)0.0095 (14)
O40.078 (2)0.082 (2)0.0380 (16)0.0233 (16)0.0002 (14)0.0067 (15)
O50.0615 (18)0.0604 (18)0.0498 (16)0.0191 (15)0.0021 (14)−0.0034 (13)
O60.080 (2)0.078 (2)0.072 (2)−0.0034 (18)0.0101 (17)0.0016 (17)
C1—C21.498 (5)C16—H16A0.97
C1—H2D0.96C16—H16B0.97
C1—H1B0.96C17—O61.392 (5)
C1—H1C0.96C17—C181.523 (5)
C2—C31.378 (5)C17—H170.98
C2—C71.391 (5)C18—N11.440 (5)
C3—C41.393 (5)C18—H18A0.97
C3—H30.93C18—H18B0.97
C4—O11.353 (4)C19—C201.385 (5)
C4—C51.409 (5)C19—N11.393 (5)
C5—C61.416 (5)C19—C251.411 (5)
C5—C81.448 (5)C20—C211.404 (5)
C6—C71.373 (5)C20—H200.93
C6—C111.490 (5)C21—C221.380 (6)
C7—H70.93C21—H210.93
C8—O21.274 (4)C22—C241.375 (5)
C8—C91.439 (5)C22—C231.505 (6)
C9—C121.403 (5)C23—H23A0.96
C9—C101.417 (5)C23—H23B0.96
C10—C151.361 (5)C23—H23C0.96
C10—C111.487 (5)C24—C251.385 (5)
C11—O41.207 (4)C24—H240.93
C12—O31.358 (4)C25—C261.496 (5)
C12—C131.379 (5)C26—H26A0.96
C13—C141.384 (5)C26—H26B0.96
C13—H130.93C26—H26C0.96
C14—O51.355 (4)N1—H1E0.86
C14—C151.405 (5)O1—H1D0.82
C15—H150.93O3—H3A0.82
C16—O51.445 (4)O6—H60.82
C16—C171.505 (5)
C2—C1—H2D109.5C17—C16—H16B110.4
C2—C1—H1B109.5H16A—C16—H16B108.6
H2D—C1—H1B109.5O6—C17—C16112.6 (3)
C2—C1—H1C109.5O6—C17—C18111.0 (3)
H2D—C1—H1C109.5C16—C17—C18109.3 (3)
H1B—C1—H1C109.5O6—C17—H17107.9
C3—C2—C7117.8 (4)C16—C17—H17107.9
C3—C2—C1121.2 (4)C18—C17—H17107.9
C7—C2—C1120.9 (4)N1—C18—C17109.1 (3)
C2—C3—C4121.9 (4)N1—C18—H18A109.9
C2—C3—H3119.0C17—C18—H18A109.9
C4—C3—H3119.0N1—C18—H18B109.9
O1—C4—C3117.5 (4)C17—C18—H18B109.9
O1—C4—C5122.1 (4)H18A—C18—H18B108.3
C3—C4—C5120.3 (4)C20—C19—N1121.9 (4)
C4—C5—C6117.2 (3)C20—C19—C25118.8 (4)
C4—C5—C8121.6 (3)N1—C19—C25119.2 (3)
C6—C5—C8121.2 (3)C19—C20—C21120.5 (4)
C7—C6—C5120.8 (4)C19—C20—H20119.8
C7—C6—C11119.4 (3)C21—C20—H20119.8
C5—C6—C11119.7 (3)C22—C21—C20121.4 (4)
C6—C7—C2121.9 (4)C22—C21—H21119.3
C6—C7—H7119.1C20—C21—H21119.3
C2—C7—H7119.1C24—C22—C21117.0 (4)
O2—C8—C9120.4 (3)C24—C22—C23121.3 (4)
O2—C8—C5119.7 (3)C21—C22—C23121.8 (4)
C9—C8—C5119.9 (3)C22—C23—H23A109.5
C12—C9—C10117.3 (3)C22—C23—H23B109.5
C12—C9—C8121.6 (3)H23A—C23—H23B109.5
C10—C9—C8121.1 (3)C22—C23—H23C109.5
C15—C10—C9121.5 (3)H23A—C23—H23C109.5
C15—C10—C11118.4 (3)H23B—C23—H23C109.5
C9—C10—C11120.1 (3)C22—C24—C25124.0 (4)
O4—C11—C10121.2 (3)C22—C24—H24118.0
O4—C11—C6120.7 (3)C25—C24—H24118.0
C10—C11—C6118.0 (3)C24—C25—C19118.3 (4)
O3—C12—C13117.2 (3)C24—C25—C26122.0 (4)
O3—C12—C9121.2 (3)C19—C25—C26119.7 (4)
C13—C12—C9121.6 (3)C25—C26—H26A109.5
C12—C13—C14119.7 (3)C25—C26—H26B109.5
C12—C13—H13120.2H26A—C26—H26B109.5
C14—C13—H13120.2C25—C26—H26C109.5
O5—C14—C13125.0 (3)H26A—C26—H26C109.5
O5—C14—C15114.8 (3)H26B—C26—H26C109.5
C13—C14—C15120.2 (3)C19—N1—C18121.8 (3)
C10—C15—C14119.7 (3)C19—N1—H1E119.1
C10—C15—H15120.1C18—N1—H1E119.1
C14—C15—H15120.1C4—O1—H1D109.5
O5—C16—C17106.6 (3)C12—O3—H3A109.5
O5—C16—H16A110.4C14—O5—C16118.5 (3)
C17—C16—H16A110.4C17—O6—H6109.5
O5—C16—H16B110.4
C7—C2—C3—C4−0.5 (6)C10—C9—C12—O3−179.4 (3)
C1—C2—C3—C4−178.2 (4)C8—C9—C12—O30.7 (6)
C2—C3—C4—O1178.9 (4)C10—C9—C12—C130.2 (6)
C2—C3—C4—C50.7 (6)C8—C9—C12—C13−179.6 (3)
O1—C4—C5—C6−179.1 (4)O3—C12—C13—C14180.0 (4)
C3—C4—C5—C6−0.9 (6)C9—C12—C13—C140.3 (6)
O1—C4—C5—C8−0.8 (6)C12—C13—C14—O5179.1 (3)
C3—C4—C5—C8177.4 (4)C12—C13—C14—C15−1.0 (6)
C4—C5—C6—C71.1 (5)C9—C10—C15—C14−0.8 (5)
C8—C5—C6—C7−177.3 (3)C11—C10—C15—C14179.5 (3)
C4—C5—C6—C11−179.5 (3)O5—C14—C15—C10−178.8 (3)
C8—C5—C6—C112.1 (5)C13—C14—C15—C101.3 (5)
C5—C6—C7—C2−0.9 (6)O5—C16—C17—O657.8 (4)
C11—C6—C7—C2179.6 (3)O5—C16—C17—C18−178.3 (3)
C3—C2—C7—C60.6 (6)O6—C17—C18—N1−54.5 (4)
C1—C2—C7—C6178.3 (4)C16—C17—C18—N1−179.3 (3)
C4—C5—C8—O20.7 (6)N1—C19—C20—C21174.2 (4)
C6—C5—C8—O2179.0 (3)C25—C19—C20—C21−1.8 (6)
C4—C5—C8—C9−179.1 (3)C19—C20—C21—C22−0.2 (6)
C6—C5—C8—C9−0.8 (5)C20—C21—C22—C241.8 (6)
O2—C8—C9—C12−0.1 (5)C20—C21—C22—C23−177.1 (4)
C5—C8—C9—C12179.7 (3)C21—C22—C24—C25−1.5 (6)
O2—C8—C9—C10−179.9 (3)C23—C22—C24—C25177.5 (4)
C5—C8—C9—C10−0.1 (5)C22—C24—C25—C19−0.5 (6)
C12—C9—C10—C150.0 (5)C22—C24—C25—C26179.3 (4)
C8—C9—C10—C15179.9 (3)C20—C19—C25—C242.1 (6)
C12—C9—C10—C11179.8 (3)N1—C19—C25—C24−174.0 (3)
C8—C9—C10—C11−0.4 (5)C20—C19—C25—C26−177.7 (4)
C15—C10—C11—O42.9 (5)N1—C19—C25—C266.2 (6)
C9—C10—C11—O4−176.8 (4)C20—C19—N1—C1815.6 (6)
C15—C10—C11—C6−178.5 (3)C25—C19—N1—C18−168.4 (4)
C9—C10—C11—C61.7 (5)C17—C18—N1—C19−178.8 (3)
C7—C6—C11—O4−4.6 (6)C13—C14—O5—C16−5.0 (5)
C5—C6—C11—O4176.0 (4)C15—C14—O5—C16175.1 (3)
C7—C6—C11—C10176.9 (3)C17—C16—O5—C14−176.9 (3)
C5—C6—C11—C10−2.6 (5)
D—H···AD—HH···AD···AD—H···A
O1—H1D···O20.821.862.575 (4)145
O3—H3A···O20.821.832.556 (4)147
O6—H6···N1i0.822.403.218 (5)177
C15—H15···O4ii0.932.433.334 (4)164
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1D⋯O20.821.862.575 (4)145
O3—H3A⋯O20.821.832.556 (4)147
O6—H6⋯N1i0.822.403.218 (5)177
C15—H15⋯O4ii0.932.433.334 (4)164

Symmetry codes: (i) ; (ii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis and biological evaluation of new derivatives of emodin.

Authors:  Lars Teich; Katja Scarlett Daub; Vera Krügel; Ludwig Nissler; Rolf Gebhardt; Kurt Eger
Journal:  Bioorg Med Chem       Date:  2004-11-15       Impact factor: 3.641

3.  Emodin induces apoptosis of human cervical cancer cells through poly(ADP-ribose) polymerase cleavage and activation of caspase-9.

Authors:  Gopal Srinivas; Ruby John Anto; Priya Srinivas; Subramanian Vidhyalakshmi; Vijayamma Priya Senan; Devarajan Karunagaran
Journal:  Eur J Pharmacol       Date:  2003-07-25       Impact factor: 4.432

  3 in total

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