Literature DB >> 21581958

Cyclo-oxygenase-1-selective inhibitor SC-560.

Sihui Long1, Kathryn L Theiss, Tonglei Li, Charles D Loftin.   

Abstract

In the title compound, 5-(4-chloro-phen-yl)-1-(4-methoxy-phen-yl)-3-(trifluoro-meth-yl)-1H-pyrazole (SC-560), C(17)H(12)ClF(3)N(2)O, a COX-1-selective inhibitor, the dihedral angles between the heterocycle and the chlorobenzene and methoxybenzene rings are 41.66 (6) and 43.08 (7)°, respectively. The dihedral angle between the two phenyl rings is 59.94 (6)°. No classic hydrogen bonds are possible in the crystal, and intermolecular interactions must be mainly of the dispersion type. This information may aid the identification of dosage formulations with improved oral bioavailability.

Entities:  

Year:  2009        PMID: 21581958      PMCID: PMC2968361          DOI: 10.1107/S1600536809001779

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background literature, see: Choi et al. (2008 ▶); Cusimano et al. (2007 ▶); Kundu & Fulton (2002 ▶); Penning et al. (1997 ▶); Smith et al. (2000 ▶); Teng et al. (2003 ▶); Tiano et al. (2002 ▶); For related structures, see: Allen (2002 ▶); Charlier et al. (2004 ▶); Norris et al. (2005 ▶); Sonar et al. (2004 ▶); Zhu et al. (2004 ▶).

Experimental

Crystal data

C17H12ClF3N2O M = 352.74 Monoclinic, a = 15.585 (3) Å b = 7.1671 (14) Å c = 15.789 (3) Å β = 116.81 (3)° V = 1574.1 (5) Å3 Z = 4 Mo Kα radiation μ = 0.28 mm−1 T = 90 (2) K 0.20 × 0.10 × 0.10 mm

Data collection

Nonius KappaCCD diffractometer Absorption correction: multi-scan (SCALEPACK; Otwinowski & Minor, 1997 ▶) T min = 0.946, T max = 0.972 6895 measured reflections 3608 independent reflections 3030 reflections with I > 2σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.094 S = 1.04 3608 reflections 218 parameters H-atom parameters constrained Δρmax = 0.34 e Å−3 Δρmin = −0.29 e Å−3 Data collection: COLLECT (Hooft, 1998 ▶); cell refinement: DENZO-SMN (Otwinowski & Minor, 1997 ▶); data reduction: DENZO-SMN; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL and local procedures. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809001779/pv2130sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809001779/pv2130Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H12ClF3N2OF(000) = 720
Mr = 352.74Dx = 1.488 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
a = 15.585 (3) ÅCell parameters from 3880 reflections
b = 7.1671 (14) Åθ = 1.0–27.5°
c = 15.789 (3) ŵ = 0.28 mm1
β = 116.81 (3)°T = 90 K
V = 1574.1 (5) Å3Block, colorless
Z = 40.20 × 0.10 × 0.10 mm
Nonius KappaCCD diffractometer3608 independent reflections
Radiation source: fine-focus sealed tube3030 reflections with I > 2σ(I)
graphiteRint = 0.020
Detector resolution: 18 pixels mm-1θmax = 27.5°, θmin = 1.5°
ω scans at fixed χ = 55°h = −20→20
Absorption correction: multi-scan (SCALEPACK; Otwinowski & Minor, 1997)k = −9→9
Tmin = 0.946, Tmax = 0.972l = −20→20
6895 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.035Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.094H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0421P)2 + 0.7994P] where P = (Fo2 + 2Fc2)/3
3608 reflections(Δ/σ)max = 0.004
218 parametersΔρmax = 0.34 e Å3
0 restraintsΔρmin = −0.29 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl130.06492 (3)0.90044 (6)0.10611 (2)0.02831 (12)
N20.38203 (8)0.87316 (17)0.67980 (8)0.0188 (2)
O200.12419 (8)0.14611 (15)0.54981 (7)0.0287 (3)
F30.56584 (7)1.19886 (15)0.74065 (7)0.0382 (3)
F20.52162 (8)1.04490 (15)0.83041 (6)0.0443 (3)
N10.32413 (8)0.81035 (16)0.59070 (7)0.0169 (2)
C100.14398 (10)0.89725 (19)0.22720 (9)0.0199 (3)
C50.33171 (9)0.91657 (19)0.52240 (9)0.0171 (3)
C180.21726 (10)0.3440 (2)0.50702 (9)0.0196 (3)
H180.21350.25290.46180.023*
F10.44389 (7)1.28688 (15)0.75784 (7)0.0448 (3)
C110.10734 (10)0.8619 (2)0.29082 (10)0.0199 (3)
H110.04080.83670.26880.024*
C190.26912 (9)0.50583 (19)0.51716 (9)0.0179 (3)
H190.30330.52390.48090.021*
C70.26748 (10)0.89925 (18)0.41982 (9)0.0170 (3)
C140.27105 (9)0.64202 (19)0.58060 (9)0.0173 (3)
C160.17333 (11)0.4491 (2)0.62713 (10)0.0244 (3)
H160.14190.42850.66570.029*
C60.48912 (10)1.1368 (2)0.74825 (10)0.0222 (3)
C120.16930 (10)0.86393 (19)0.38715 (9)0.0190 (3)
H120.14490.84110.43150.023*
C40.39888 (9)1.0532 (2)0.56958 (9)0.0189 (3)
H40.42161.14820.54280.023*
C80.30233 (10)0.9337 (2)0.35415 (10)0.0211 (3)
H80.36890.95760.37570.025*
C30.42585 (9)1.0204 (2)0.66545 (9)0.0190 (3)
C150.22267 (10)0.6153 (2)0.63461 (10)0.0222 (3)
H150.22310.71020.67680.027*
C170.17048 (10)0.3143 (2)0.56306 (10)0.0217 (3)
C90.24066 (11)0.9335 (2)0.25715 (10)0.0238 (3)
H90.26450.95780.21240.029*
C210.07544 (14)0.1110 (3)0.60633 (11)0.0403 (5)
H21A0.12140.11850.67370.060*
H21B0.0468−0.01380.59210.060*
H21C0.02480.20430.59190.060*
U11U22U33U12U13U23
Cl130.0288 (2)0.0370 (2)0.01330 (17)0.00223 (16)0.00434 (14)0.00022 (14)
N20.0178 (6)0.0216 (6)0.0138 (5)−0.0009 (5)0.0044 (4)−0.0028 (4)
O200.0349 (6)0.0259 (6)0.0258 (5)−0.0125 (5)0.0143 (5)−0.0024 (4)
F30.0326 (5)0.0472 (6)0.0402 (5)−0.0209 (5)0.0211 (4)−0.0206 (5)
F20.0533 (6)0.0441 (6)0.0177 (4)−0.0183 (5)0.0001 (4)−0.0012 (4)
N10.0180 (5)0.0186 (6)0.0126 (5)−0.0015 (5)0.0057 (4)−0.0014 (4)
C100.0238 (7)0.0184 (7)0.0134 (6)0.0030 (5)0.0046 (5)0.0000 (5)
C50.0177 (6)0.0180 (7)0.0159 (6)0.0022 (5)0.0080 (5)0.0011 (5)
C180.0207 (7)0.0180 (7)0.0178 (6)0.0029 (5)0.0067 (5)−0.0008 (5)
F10.0342 (5)0.0427 (6)0.0472 (6)0.0054 (5)0.0092 (5)−0.0268 (5)
C110.0187 (6)0.0189 (7)0.0189 (6)0.0009 (5)0.0059 (5)0.0001 (5)
C190.0188 (6)0.0189 (7)0.0170 (6)0.0031 (5)0.0089 (5)0.0019 (5)
C70.0200 (6)0.0141 (6)0.0150 (6)0.0016 (5)0.0063 (5)0.0008 (5)
C140.0171 (6)0.0177 (7)0.0142 (6)−0.0010 (5)0.0045 (5)0.0013 (5)
C160.0259 (7)0.0312 (8)0.0191 (6)−0.0075 (6)0.0127 (6)−0.0023 (6)
C60.0208 (7)0.0240 (8)0.0207 (7)−0.0022 (6)0.0084 (6)−0.0033 (6)
C120.0215 (7)0.0192 (7)0.0171 (6)0.0008 (5)0.0093 (5)0.0011 (5)
C40.0182 (6)0.0186 (7)0.0189 (6)0.0001 (5)0.0073 (5)0.0009 (5)
C80.0199 (7)0.0237 (7)0.0193 (7)−0.0004 (6)0.0084 (5)0.0003 (5)
C30.0166 (6)0.0195 (7)0.0191 (6)0.0013 (5)0.0066 (5)−0.0008 (5)
C150.0238 (7)0.0262 (8)0.0172 (6)−0.0032 (6)0.0097 (6)−0.0044 (6)
C170.0204 (7)0.0213 (7)0.0188 (6)−0.0037 (6)0.0048 (5)0.0024 (5)
C90.0270 (7)0.0280 (8)0.0177 (6)0.0000 (6)0.0113 (6)0.0009 (6)
C210.0495 (11)0.0482 (11)0.0253 (8)−0.0297 (9)0.0188 (8)−0.0057 (7)
Cl13—C101.7461 (15)C19—C141.3892 (19)
N2—C31.3307 (18)C19—H190.9500
N2—N11.3605 (15)C7—C81.3924 (19)
O20—C171.3714 (18)C7—C121.3998 (19)
O20—C211.4312 (19)C14—C151.383 (2)
F3—C61.3308 (17)C16—C171.385 (2)
F2—C61.3345 (17)C16—C151.393 (2)
N1—C51.3680 (17)C16—H160.9500
N1—C141.4305 (17)C6—C31.4884 (19)
C10—C111.384 (2)C12—H120.9500
C10—C91.385 (2)C4—C31.3962 (19)
C5—C41.3807 (19)C4—H40.9500
C5—C71.4759 (18)C8—C91.394 (2)
C18—C191.381 (2)C8—H80.9500
C18—C171.393 (2)C15—H150.9500
C18—H180.9500C9—H90.9500
F1—C61.3313 (18)C21—H21A0.9800
C11—C121.3861 (19)C21—H21B0.9800
C11—H110.9500C21—H21C0.9800
C3—N2—N1103.79 (11)F1—C6—F2106.06 (12)
C17—O20—C21116.75 (12)F3—C6—C3111.98 (12)
N2—N1—C5112.22 (11)F1—C6—C3112.21 (12)
N2—N1—C14118.35 (11)F2—C6—C3112.80 (13)
C5—N1—C14129.25 (11)C11—C12—C7120.73 (13)
C11—C10—C9121.85 (13)C11—C12—H12119.6
C11—C10—Cl13118.59 (11)C7—C12—H12119.6
C9—C10—Cl13119.55 (11)C5—C4—C3104.46 (12)
N1—C5—C4106.47 (11)C5—C4—H4127.8
N1—C5—C7124.14 (12)C3—C4—H4127.8
C4—C5—C7128.73 (12)C7—C8—C9120.73 (13)
C19—C18—C17120.10 (13)C7—C8—H8119.6
C19—C18—H18120.0C9—C8—H8119.6
C17—C18—H18120.0N2—C3—C4113.05 (12)
C10—C11—C12118.89 (13)N2—C3—C6118.86 (12)
C10—C11—H11120.6C4—C3—C6127.88 (13)
C12—C11—H11120.6C14—C15—C16119.99 (13)
C18—C19—C14119.66 (12)C14—C15—H15120.0
C18—C19—H19120.2C16—C15—H15120.0
C14—C19—H19120.2O20—C17—C16124.47 (13)
C8—C7—C12119.10 (12)O20—C17—C18115.32 (13)
C8—C7—C5120.19 (12)C16—C17—C18120.21 (13)
C12—C7—C5120.48 (12)C10—C9—C8118.70 (13)
C15—C14—C19120.45 (13)C10—C9—H9120.6
C15—C14—N1119.79 (12)C8—C9—H9120.6
C19—C14—N1119.76 (12)O20—C21—H21A109.5
C17—C16—C15119.53 (13)O20—C21—H21B109.5
C17—C16—H16120.2H21A—C21—H21B109.5
C15—C16—H16120.2O20—C21—H21C109.5
F3—C6—F1106.49 (12)H21A—C21—H21C109.5
F3—C6—F2106.86 (12)H21B—C21—H21C109.5
C3—N2—N1—C5−0.10 (14)C12—C7—C8—C90.1 (2)
C3—N2—N1—C14175.45 (11)C5—C7—C8—C9−174.46 (13)
N2—N1—C5—C40.92 (15)N1—N2—C3—C4−0.79 (15)
C14—N1—C5—C4−174.02 (12)N1—N2—C3—C6174.38 (12)
N2—N1—C5—C7−170.48 (12)C5—C4—C3—N21.34 (16)
C14—N1—C5—C714.6 (2)C5—C4—C3—C6−173.29 (13)
C9—C10—C11—C120.3 (2)F3—C6—C3—N2143.23 (13)
Cl13—C10—C11—C12−178.35 (11)F1—C6—C3—N2−97.07 (16)
C17—C18—C19—C14−2.7 (2)F2—C6—C3—N222.64 (18)
N1—C5—C7—C8−147.72 (14)F3—C6—C3—C4−42.4 (2)
C4—C5—C7—C842.9 (2)F1—C6—C3—C477.29 (18)
N1—C5—C7—C1237.8 (2)F2—C6—C3—C4−163.00 (14)
C4—C5—C7—C12−131.61 (15)C19—C14—C15—C161.4 (2)
C18—C19—C14—C151.0 (2)N1—C14—C15—C16−178.04 (12)
C18—C19—C14—N1−179.52 (12)C17—C16—C15—C14−2.2 (2)
N2—N1—C14—C1545.45 (17)C21—O20—C17—C160.4 (2)
C5—N1—C14—C15−139.87 (14)C21—O20—C17—C18179.96 (14)
N2—N1—C14—C19−134.02 (13)C15—C16—C17—O20180.00 (13)
C5—N1—C14—C1940.7 (2)C15—C16—C17—C180.5 (2)
C10—C11—C12—C7−0.6 (2)C19—C18—C17—O20−177.60 (12)
C8—C7—C12—C110.4 (2)C19—C18—C17—C162.0 (2)
C5—C7—C12—C11174.95 (13)C11—C10—C9—C80.2 (2)
N1—C5—C4—C3−1.30 (15)Cl13—C10—C9—C8178.84 (11)
C7—C5—C4—C3169.57 (13)C7—C8—C9—C10−0.4 (2)
  12 in total

1.  The Cambridge Structural Database: a quarter of a million crystal structures and rising.

Authors:  Frank H Allen
Journal:  Acta Crystallogr B       Date:  2002-05-29

Review 2.  Cyclooxygenases: structural, cellular, and molecular biology.

Authors:  W L Smith; D L DeWitt; R M Garavito
Journal:  Annu Rev Biochem       Date:  2000       Impact factor: 23.643

3.  1-(2,5-Dichlorophenyl)-3-methyl-5-phenyl-1H-pyrazole.

Authors:  Vijayakumar N Sonar; Sean Parkin; Peter A Crooks
Journal:  Acta Crystallogr C       Date:  2004-07-10       Impact factor: 1.172

4.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

5.  New hydroxy-pyrazoline intermediates, subtle regio-selectivity and relative reaction rate variations observed during acid catalyzed and neutral pyrazole cyclization.

Authors:  Timothy Norris; Roberto Colon-Cruz; David H B Ripin
Journal:  Org Biomol Chem       Date:  2005-04-20       Impact factor: 3.876

6.  Selective cyclooxygenase (COX)-1 or COX-2 inhibitors control metastatic disease in a murine model of breast cancer.

Authors:  Namita Kundu; Amy M Fulton
Journal:  Cancer Res       Date:  2002-04-15       Impact factor: 12.701

7.  Genetic deletion or pharmacological inhibition of cyclooxygenase-1 attenuate lipopolysaccharide-induced inflammatory response and brain injury.

Authors:  Sang-Ho Choi; Robert Langenbach; Francesca Bosetti
Journal:  FASEB J       Date:  2007-12-27       Impact factor: 5.191

8.  Formulation dependent pharmacokinetics, bioavailability and renal toxicity of a selective cyclooxygenase-1 inhibitor SC-560 in the rat.

Authors:  Xiao Wei Teng; Abdallalah K M Abu-Mellal; Neal M Davies
Journal:  J Pharm Pharm Sci       Date:  2003 May-Aug       Impact factor: 2.327

9.  1-[4-(Methylsulfonyl)phenyl]-5-phenyl-1H-pyrazole derivatives.

Authors:  Caroline Charlier; Bernadette Norberg; Laurence Goossens; Jean Pierre Hénichart; François Durant
Journal:  Acta Crystallogr C       Date:  2004-08-11       Impact factor: 1.172

10.  Deficiency of either cyclooxygenase (COX)-1 or COX-2 alters epidermal differentiation and reduces mouse skin tumorigenesis.

Authors:  Howard F Tiano; Charles D Loftin; Jackie Akunda; Christopher A Lee; Judson Spalding; Alisha Sessoms; David B Dunson; Eleanor G Rogan; Scott G Morham; Robert C Smart; Robert Langenbach
Journal:  Cancer Res       Date:  2002-06-15       Impact factor: 12.701

View more
  2 in total

1.  Solid-state properties of the cyclooxygenase-1-selective inhibitor, SC-560.

Authors:  Sihui Long; Kathryn L Theiss; Alessandra Mattei; Charles D Loftin; Tonglei Li
Journal:  AAPS PharmSciTech       Date:  2010-03-20       Impact factor: 3.246

2.  Novel late-stage radiosynthesis of 5-[18F]-trifluoromethyl-1,2,4-oxadiazole (TFMO) containing molecules for PET imaging.

Authors:  Nashaat Turkman; Daxing Liu; Isabella Pirola
Journal:  Sci Rep       Date:  2021-05-21       Impact factor: 4.379

  2 in total

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