| Literature DB >> 21581941 |
Hoong-Kun Fun, Reza Kia, Nirmal Kumar Das, Debabrata Sen, Shyamaprosad Goswami.
Abstract
The asymmetric unit of the title compound, C(14)H(18)N(3)O(+)·Cl(-)·H(2)O, comprises a substituted amido-naphthyridine cation, a chloride anion and a water mol-ecule of crystallization. Intra-molecular C-H⋯O hydrogen bonds generate six-membered rings, producing an S(6) ring motif. The amido group is twisted from the naphthyridine ring, making a dihedral angle of 17.65 (7)°. The crystal structure is stabilized by inter-molecular N-H⋯O, N-H⋯Cl, O-H⋯Cl (× 2), and C-H⋯O (× 2) hydrogen bonds. These inter-actions linked neighbouring mol-ecules into chains along the a and b axes of the crystal, thus forming mol-ecular sheets parallel to the (001) plane.Entities:
Year: 2009 PMID: 21581941 PMCID: PMC2968242 DOI: 10.1107/S1600536808042955
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C14H18N3O+·Cl−·H2O | |
| Orthorhombic, | Mo |
| Hall symbol: -P 2n 2ab | Cell parameters from 5042 reflections |
| θ = 2.3–29.9° | |
| µ = 0.26 mm−1 | |
| Block, colourless | |
| 0.41 × 0.29 × 0.19 mm |
| Bruker SMART APEXII CCD area-detector diffractometer | 4489 independent reflections |
| Radiation source: fine-focus sealed tube | 3470 reflections with |
| graphite | |
| φ and ω scans | θmax = 30.2°, θmin = 2.1° |
| Absorption correction: multi-scan ( | |
| 19927 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 4489 reflections | (Δ/σ)max = 0.001 |
| 198 parameters | Δρmax = 0.36 e Å−3 |
| 0 restraints | Δρmin = −0.27 e Å−3 |
| Experimental. The low-temperature data was collected with the Oxford Cyrosystem Cobra low-temperature attachment. |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| Cl1 | 0.613003 (17) | 0.14014 (4) | 0.995585 (18) | 0.02130 (9) | |
| O1 | 0.35100 (5) | 0.43024 (11) | 0.71527 (5) | 0.0247 (2) | |
| N1 | 0.41076 (6) | 0.32279 (13) | 0.81210 (7) | 0.0197 (2) | |
| N2 | 0.50292 (6) | 0.40348 (12) | 0.88207 (6) | 0.0180 (2) | |
| N3 | 0.59795 (6) | 0.47140 (12) | 0.95397 (6) | 0.0174 (2) | |
| C1 | 0.54282 (6) | 0.51370 (14) | 0.90903 (7) | 0.0166 (3) | |
| C2 | 0.64346 (7) | 0.56681 (15) | 0.98399 (7) | 0.0194 (3) | |
| C3 | 0.63409 (7) | 0.71897 (15) | 0.97088 (8) | 0.0224 (3) | |
| H3A | 0.6653 | 0.7870 | 0.9918 | 0.027* | |
| C4 | 0.57933 (7) | 0.76783 (15) | 0.92753 (8) | 0.0218 (3) | |
| H4A | 0.5730 | 0.8690 | 0.9196 | 0.026* | |
| C5 | 0.53258 (7) | 0.66552 (14) | 0.89490 (7) | 0.0182 (3) | |
| C6 | 0.47437 (7) | 0.70180 (15) | 0.84855 (8) | 0.0216 (3) | |
| H6A | 0.4641 | 0.8006 | 0.8381 | 0.026* | |
| C7 | 0.43369 (7) | 0.59217 (15) | 0.81942 (8) | 0.0209 (3) | |
| H7A | 0.3958 | 0.6147 | 0.7883 | 0.025* | |
| C8 | 0.45006 (7) | 0.44204 (14) | 0.83733 (7) | 0.0178 (3) | |
| C9 | 0.36274 (7) | 0.32093 (15) | 0.75354 (7) | 0.0191 (3) | |
| C10 | 0.32593 (7) | 0.17247 (15) | 0.74131 (7) | 0.0209 (3) | |
| C11 | 0.27199 (8) | 0.19006 (18) | 0.67779 (8) | 0.0276 (3) | |
| H11A | 0.2482 | 0.0973 | 0.6698 | 0.041* | |
| H11B | 0.2956 | 0.2190 | 0.6323 | 0.041* | |
| H11C | 0.2383 | 0.2648 | 0.6914 | 0.041* | |
| C12 | 0.28790 (8) | 0.12662 (18) | 0.81407 (8) | 0.0288 (3) | |
| H12A | 0.3216 | 0.1148 | 0.8539 | 0.043* | |
| H12B | 0.2637 | 0.0344 | 0.8060 | 0.043* | |
| H12C | 0.2545 | 0.2020 | 0.8278 | 0.043* | |
| C13 | 0.38030 (8) | 0.05470 (16) | 0.71945 (8) | 0.0272 (3) | |
| H13A | 0.4136 | 0.0431 | 0.7597 | 0.041* | |
| H13B | 0.4044 | 0.0853 | 0.6745 | 0.041* | |
| H13C | 0.3569 | −0.0381 | 0.7105 | 0.041* | |
| C14 | 0.70189 (7) | 0.50748 (17) | 1.03071 (8) | 0.0254 (3) | |
| H14A | 0.6971 | 0.4017 | 1.0352 | 0.038* | |
| H14B | 0.7003 | 0.5518 | 1.0799 | 0.038* | |
| H14C | 0.7460 | 0.5305 | 1.0072 | 0.038* | |
| O1W | 0.46432 (6) | 0.07427 (12) | 0.89481 (6) | 0.0233 (2) | |
| H1N1 | 0.4218 (9) | 0.244 (2) | 0.8337 (9) | 0.028 (4)* | |
| H1N3 | 0.6013 (9) | 0.376 (2) | 0.9631 (11) | 0.037 (5)* | |
| H1W1 | 0.4421 (10) | 0.016 (2) | 0.9277 (11) | 0.042 (5)* | |
| H2W1 | 0.4959 (11) | 0.119 (2) | 0.9197 (11) | 0.048 (6)* |
| Cl1 | 0.02288 (18) | 0.01664 (16) | 0.02439 (17) | −0.00058 (12) | 0.00160 (12) | 0.00273 (13) |
| O1 | 0.0238 (5) | 0.0249 (5) | 0.0254 (5) | 0.0023 (4) | −0.0030 (4) | 0.0028 (4) |
| N1 | 0.0191 (6) | 0.0159 (6) | 0.0241 (6) | −0.0016 (4) | −0.0036 (4) | 0.0020 (5) |
| N2 | 0.0171 (5) | 0.0146 (5) | 0.0223 (5) | −0.0005 (4) | −0.0002 (4) | 0.0004 (4) |
| N3 | 0.0182 (5) | 0.0136 (5) | 0.0204 (5) | −0.0008 (4) | 0.0004 (4) | 0.0003 (4) |
| C1 | 0.0163 (6) | 0.0157 (6) | 0.0177 (6) | 0.0000 (5) | 0.0027 (5) | 0.0003 (5) |
| C2 | 0.0182 (6) | 0.0200 (7) | 0.0200 (6) | −0.0025 (5) | 0.0013 (5) | −0.0020 (5) |
| C3 | 0.0232 (7) | 0.0193 (7) | 0.0247 (7) | −0.0064 (5) | 0.0020 (5) | −0.0026 (6) |
| C4 | 0.0265 (7) | 0.0146 (6) | 0.0242 (7) | −0.0022 (5) | 0.0039 (5) | −0.0005 (5) |
| C5 | 0.0211 (7) | 0.0147 (6) | 0.0187 (6) | −0.0002 (5) | 0.0042 (5) | −0.0004 (5) |
| C6 | 0.0250 (7) | 0.0159 (6) | 0.0238 (6) | 0.0027 (5) | 0.0027 (5) | 0.0015 (5) |
| C7 | 0.0211 (7) | 0.0188 (6) | 0.0228 (6) | 0.0029 (5) | −0.0013 (5) | 0.0018 (5) |
| C8 | 0.0163 (6) | 0.0177 (6) | 0.0193 (6) | 0.0001 (5) | 0.0022 (5) | −0.0001 (5) |
| C9 | 0.0146 (6) | 0.0235 (7) | 0.0191 (6) | 0.0011 (5) | 0.0033 (5) | −0.0016 (5) |
| C10 | 0.0187 (7) | 0.0253 (7) | 0.0187 (6) | −0.0052 (5) | 0.0017 (5) | −0.0023 (5) |
| C11 | 0.0221 (7) | 0.0360 (8) | 0.0248 (7) | −0.0061 (6) | −0.0017 (6) | −0.0019 (6) |
| C12 | 0.0277 (8) | 0.0362 (9) | 0.0226 (7) | −0.0125 (7) | 0.0037 (6) | −0.0010 (6) |
| C13 | 0.0301 (8) | 0.0246 (7) | 0.0270 (7) | −0.0018 (6) | 0.0006 (6) | −0.0048 (6) |
| C14 | 0.0207 (7) | 0.0254 (7) | 0.0300 (7) | −0.0025 (6) | −0.0049 (6) | −0.0010 (6) |
| O1W | 0.0259 (6) | 0.0190 (5) | 0.0251 (5) | −0.0034 (4) | −0.0011 (4) | 0.0035 (4) |
| O1—C9 | 1.2164 (16) | C7—H7A | 0.9300 |
| N1—C9 | 1.3824 (17) | C9—C10 | 1.5248 (19) |
| N1—C8 | 1.3827 (17) | C10—C13 | 1.531 (2) |
| N1—H1N1 | 0.834 (17) | C10—C11 | 1.5312 (19) |
| N2—C8 | 1.3266 (17) | C10—C12 | 1.5353 (19) |
| N2—C1 | 1.3377 (16) | C11—H11A | 0.9600 |
| N3—C2 | 1.3305 (17) | C11—H11B | 0.9600 |
| N3—C1 | 1.3705 (17) | C11—H11C | 0.9600 |
| N3—H1N3 | 0.881 (18) | C12—H12A | 0.9600 |
| C1—C5 | 1.4039 (18) | C12—H12B | 0.9600 |
| C2—C3 | 1.401 (2) | C12—H12C | 0.9600 |
| C2—C14 | 1.4851 (19) | C13—H13A | 0.9600 |
| C3—C4 | 1.367 (2) | C13—H13B | 0.9600 |
| C3—H3A | 0.9300 | C13—H13C | 0.9600 |
| C4—C5 | 1.4050 (19) | C14—H14A | 0.9600 |
| C4—H4A | 0.9300 | C14—H14B | 0.9600 |
| C5—C6 | 1.4163 (19) | C14—H14C | 0.9600 |
| C6—C7 | 1.3565 (19) | O1W—H1W1 | 0.89 (2) |
| C6—H6A | 0.9300 | O1W—H2W1 | 0.85 (2) |
| C7—C8 | 1.4236 (18) | ||
| C9—N1—C8 | 127.52 (12) | N1—C9—C10 | 114.86 (12) |
| C9—N1—H1N1 | 120.1 (12) | C9—C10—C13 | 109.50 (11) |
| C8—N1—H1N1 | 112.1 (12) | C9—C10—C11 | 108.73 (12) |
| C8—N2—C1 | 116.67 (11) | C13—C10—C11 | 109.72 (11) |
| C2—N3—C1 | 123.38 (12) | C9—C10—C12 | 109.43 (11) |
| C2—N3—H1N3 | 120.8 (12) | C13—C10—C12 | 110.14 (12) |
| C1—N3—H1N3 | 115.8 (12) | C11—C10—C12 | 109.30 (11) |
| N2—C1—N3 | 115.78 (11) | C10—C11—H11A | 109.5 |
| N2—C1—C5 | 125.49 (12) | C10—C11—H11B | 109.5 |
| N3—C1—C5 | 118.73 (12) | H11A—C11—H11B | 109.5 |
| N3—C2—C3 | 118.86 (12) | C10—C11—H11C | 109.5 |
| N3—C2—C14 | 118.48 (12) | H11A—C11—H11C | 109.5 |
| C3—C2—C14 | 122.65 (13) | H11B—C11—H11C | 109.5 |
| C4—C3—C2 | 120.34 (13) | C10—C12—H12A | 109.5 |
| C4—C3—H3A | 119.8 | C10—C12—H12B | 109.5 |
| C2—C3—H3A | 119.8 | H12A—C12—H12B | 109.5 |
| C3—C4—C5 | 120.14 (13) | C10—C12—H12C | 109.5 |
| C3—C4—H4A | 119.9 | H12A—C12—H12C | 109.5 |
| C5—C4—H4A | 119.9 | H12B—C12—H12C | 109.5 |
| C1—C5—C4 | 118.54 (12) | C10—C13—H13A | 109.5 |
| C1—C5—C6 | 115.89 (12) | C10—C13—H13B | 109.5 |
| C4—C5—C6 | 125.57 (12) | H13A—C13—H13B | 109.5 |
| C7—C6—C5 | 119.89 (13) | C10—C13—H13C | 109.5 |
| C7—C6—H6A | 120.1 | H13A—C13—H13C | 109.5 |
| C5—C6—H6A | 120.1 | H13B—C13—H13C | 109.5 |
| C6—C7—C8 | 118.81 (13) | C2—C14—H14A | 109.5 |
| C6—C7—H7A | 120.6 | C2—C14—H14B | 109.5 |
| C8—C7—H7A | 120.6 | H14A—C14—H14B | 109.5 |
| N2—C8—N1 | 113.54 (12) | C2—C14—H14C | 109.5 |
| N2—C8—C7 | 123.21 (12) | H14A—C14—H14C | 109.5 |
| N1—C8—C7 | 123.21 (12) | H14B—C14—H14C | 109.5 |
| O1—C9—N1 | 122.02 (13) | H1W1—O1W—H2W1 | 106.0 (17) |
| O1—C9—C10 | 123.12 (12) | ||
| C8—N2—C1—N3 | −178.82 (11) | C4—C5—C6—C7 | 178.98 (13) |
| C8—N2—C1—C5 | 1.12 (19) | C5—C6—C7—C8 | 1.0 (2) |
| C2—N3—C1—N2 | 178.57 (12) | C1—N2—C8—N1 | −179.49 (11) |
| C2—N3—C1—C5 | −1.37 (19) | C1—N2—C8—C7 | −1.82 (19) |
| C1—N3—C2—C3 | 1.62 (19) | C9—N1—C8—N2 | −165.13 (12) |
| C1—N3—C2—C14 | −178.93 (12) | C9—N1—C8—C7 | 17.2 (2) |
| N3—C2—C3—C4 | −0.5 (2) | C6—C7—C8—N2 | 0.8 (2) |
| C14—C2—C3—C4 | −179.88 (13) | C6—C7—C8—N1 | 178.26 (12) |
| C2—C3—C4—C5 | −0.9 (2) | C8—N1—C9—O1 | 1.8 (2) |
| N2—C1—C5—C4 | −179.98 (12) | C8—N1—C9—C10 | −177.97 (12) |
| N3—C1—C5—C4 | −0.04 (18) | O1—C9—C10—C13 | 117.22 (14) |
| N2—C1—C5—C6 | 0.55 (19) | N1—C9—C10—C13 | −63.06 (15) |
| N3—C1—C5—C6 | −179.51 (11) | O1—C9—C10—C11 | −2.65 (18) |
| C3—C4—C5—C1 | 1.12 (19) | N1—C9—C10—C11 | 177.07 (11) |
| C3—C4—C5—C6 | −179.46 (13) | O1—C9—C10—C12 | −121.97 (15) |
| C1—C5—C6—C7 | −1.59 (18) | N1—C9—C10—C12 | 57.75 (15) |
| H··· | ||||
| N1—H1N1···O1W | 0.833 (18) | 2.041 (17) | 2.8633 (16) | 169.1 (16) |
| N3—H1N3···Cl1 | 0.877 (18) | 2.213 (18) | 3.0870 (11) | 175.2 (16) |
| O1W—H1W1···Cl1i | 0.891 (19) | 2.219 (19) | 3.1091 (12) | 176.5 (18) |
| O1W—H2W1···Cl1 | 0.85 (2) | 2.61 (2) | 3.3960 (12) | 155.3 (16) |
| C7—H7A···O1 | 0.93 | 2.27 | 2.8298 (17) | 118 |
| C11—H11A···O1ii | 0.96 | 2.54 | 3.3742 (18) | 145 |
| C13—H13A···O1W | 0.96 | 2.60 | 3.4997 (18) | 157 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1 | 0.833 (18) | 2.041 (17) | 2.8633 (16) | 169.1 (16) |
| N3—H1 | 0.877 (18) | 2.213 (18) | 3.0870 (11) | 175.2 (16) |
| O1 | 0.891 (19) | 2.219 (19) | 3.1091 (12) | 176.5 (18) |
| O1 | 0.85 (2) | 2.61 (2) | 3.3960 (12) | 155.3 (16) |
| C7—H7 | 0.93 | 2.27 | 2.8298 (17) | 118 |
| C11—H11 | 0.96 | 2.54 | 3.3742 (18) | 145 |
| C13—H13 | 0.96 | 2.60 | 3.4997 (18) | 157 |
Symmetry codes: (i) ; (ii) .