Literature DB >> 21581941

7-(2,2-Dimethylpropanamido)-2-methyl-1,8-naphthyridin-1-ium chloride monohydrate.

Hoong-Kun Fun, Reza Kia, Nirmal Kumar Das, Debabrata Sen, Shyamaprosad Goswami.   

Abstract

The asymmetric unit of the title compound, C(14)H(18)N(3)O(+)·Cl(-)·H(2)O, comprises a substituted amido-naphthyridine cation, a chloride anion and a water mol-ecule of crystallization. Intra-molecular C-H⋯O hydrogen bonds generate six-membered rings, producing an S(6) ring motif. The amido group is twisted from the naphthyridine ring, making a dihedral angle of 17.65 (7)°. The crystal structure is stabilized by inter-molecular N-H⋯O, N-H⋯Cl, O-H⋯Cl (× 2), and C-H⋯O (× 2) hydrogen bonds. These inter-actions linked neighbouring mol-ecules into chains along the a and b axes of the crystal, thus forming mol-ecular sheets parallel to the (001) plane.

Entities:  

Year:  2009        PMID: 21581941      PMCID: PMC2968242          DOI: 10.1107/S1600536808042955

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For details of hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For biological activity and mol­ecular recognition, see: Goswami et al. (2005 ▶); Carmen et al. (2004 ▶); Goswami & Mukherjee (1997 ▶); Yu et al. (2008 ▶).

Experimental

Crystal data

C14H18N3O+·Cl−·H2O M = 297.78 Orthorhombic, a = 19.0092 (5) Å b = 9.0077 (2) Å c = 17.7294 (5) Å V = 3035.79 (14) Å3 Z = 8 Mo Kα radiation μ = 0.26 mm−1 T = 100.0 (1) K 0.41 × 0.29 × 0.19 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (; Bruker, 2005 ▶) T min = 0.902, T max = 0.954 19927 measured reflections 4489 independent reflections 3470 reflections with I > 2σ(I) R int = 0.037

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.102 S = 1.07 4489 reflections 198 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.36 e Å−3 Δρmin = −0.27 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶)’; data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2003 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808042955/ng2528sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808042955/ng2528Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H18N3O+·Cl·H2OF(000) = 1264
Mr = 297.78Dx = 1.303 Mg m3
Orthorhombic, PbcnMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2n 2abCell parameters from 5042 reflections
a = 19.0092 (5) Åθ = 2.3–29.9°
b = 9.0077 (2) ŵ = 0.26 mm1
c = 17.7294 (5) ÅT = 100 K
V = 3035.79 (14) Å3Block, colourless
Z = 80.41 × 0.29 × 0.19 mm
Bruker SMART APEXII CCD area-detector diffractometer4489 independent reflections
Radiation source: fine-focus sealed tube3470 reflections with I > 2σ(I)
graphiteRint = 0.037
φ and ω scansθmax = 30.2°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −26→23
Tmin = 0.902, Tmax = 0.954k = −12→12
19927 measured reflectionsl = −25→18
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.102H atoms treated by a mixture of independent and constrained refinement
S = 1.07w = 1/[σ2(Fo2) + (0.0453P)2 + 0.653P] where P = (Fo2 + 2Fc2)/3
4489 reflections(Δ/σ)max = 0.001
198 parametersΔρmax = 0.36 e Å3
0 restraintsΔρmin = −0.27 e Å3
Experimental. The low-temperature data was collected with the Oxford Cyrosystem Cobra low-temperature attachment.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.613003 (17)0.14014 (4)0.995585 (18)0.02130 (9)
O10.35100 (5)0.43024 (11)0.71527 (5)0.0247 (2)
N10.41076 (6)0.32279 (13)0.81210 (7)0.0197 (2)
N20.50292 (6)0.40348 (12)0.88207 (6)0.0180 (2)
N30.59795 (6)0.47140 (12)0.95397 (6)0.0174 (2)
C10.54282 (6)0.51370 (14)0.90903 (7)0.0166 (3)
C20.64346 (7)0.56681 (15)0.98399 (7)0.0194 (3)
C30.63409 (7)0.71897 (15)0.97088 (8)0.0224 (3)
H3A0.66530.78700.99180.027*
C40.57933 (7)0.76783 (15)0.92753 (8)0.0218 (3)
H4A0.57300.86900.91960.026*
C50.53258 (7)0.66552 (14)0.89490 (7)0.0182 (3)
C60.47437 (7)0.70180 (15)0.84855 (8)0.0216 (3)
H6A0.46410.80060.83810.026*
C70.43369 (7)0.59217 (15)0.81942 (8)0.0209 (3)
H7A0.39580.61470.78830.025*
C80.45006 (7)0.44204 (14)0.83733 (7)0.0178 (3)
C90.36274 (7)0.32093 (15)0.75354 (7)0.0191 (3)
C100.32593 (7)0.17247 (15)0.74131 (7)0.0209 (3)
C110.27199 (8)0.19006 (18)0.67779 (8)0.0276 (3)
H11A0.24820.09730.66980.041*
H11B0.29560.21900.63230.041*
H11C0.23830.26480.69140.041*
C120.28790 (8)0.12662 (18)0.81407 (8)0.0288 (3)
H12A0.32160.11480.85390.043*
H12B0.26370.03440.80600.043*
H12C0.25450.20200.82780.043*
C130.38030 (8)0.05470 (16)0.71945 (8)0.0272 (3)
H13A0.41360.04310.75970.041*
H13B0.40440.08530.67450.041*
H13C0.3569−0.03810.71050.041*
C140.70189 (7)0.50748 (17)1.03071 (8)0.0254 (3)
H14A0.69710.40171.03520.038*
H14B0.70030.55181.07990.038*
H14C0.74600.53051.00720.038*
O1W0.46432 (6)0.07427 (12)0.89481 (6)0.0233 (2)
H1N10.4218 (9)0.244 (2)0.8337 (9)0.028 (4)*
H1N30.6013 (9)0.376 (2)0.9631 (11)0.037 (5)*
H1W10.4421 (10)0.016 (2)0.9277 (11)0.042 (5)*
H2W10.4959 (11)0.119 (2)0.9197 (11)0.048 (6)*
U11U22U33U12U13U23
Cl10.02288 (18)0.01664 (16)0.02439 (17)−0.00058 (12)0.00160 (12)0.00273 (13)
O10.0238 (5)0.0249 (5)0.0254 (5)0.0023 (4)−0.0030 (4)0.0028 (4)
N10.0191 (6)0.0159 (6)0.0241 (6)−0.0016 (4)−0.0036 (4)0.0020 (5)
N20.0171 (5)0.0146 (5)0.0223 (5)−0.0005 (4)−0.0002 (4)0.0004 (4)
N30.0182 (5)0.0136 (5)0.0204 (5)−0.0008 (4)0.0004 (4)0.0003 (4)
C10.0163 (6)0.0157 (6)0.0177 (6)0.0000 (5)0.0027 (5)0.0003 (5)
C20.0182 (6)0.0200 (7)0.0200 (6)−0.0025 (5)0.0013 (5)−0.0020 (5)
C30.0232 (7)0.0193 (7)0.0247 (7)−0.0064 (5)0.0020 (5)−0.0026 (6)
C40.0265 (7)0.0146 (6)0.0242 (7)−0.0022 (5)0.0039 (5)−0.0005 (5)
C50.0211 (7)0.0147 (6)0.0187 (6)−0.0002 (5)0.0042 (5)−0.0004 (5)
C60.0250 (7)0.0159 (6)0.0238 (6)0.0027 (5)0.0027 (5)0.0015 (5)
C70.0211 (7)0.0188 (6)0.0228 (6)0.0029 (5)−0.0013 (5)0.0018 (5)
C80.0163 (6)0.0177 (6)0.0193 (6)0.0001 (5)0.0022 (5)−0.0001 (5)
C90.0146 (6)0.0235 (7)0.0191 (6)0.0011 (5)0.0033 (5)−0.0016 (5)
C100.0187 (7)0.0253 (7)0.0187 (6)−0.0052 (5)0.0017 (5)−0.0023 (5)
C110.0221 (7)0.0360 (8)0.0248 (7)−0.0061 (6)−0.0017 (6)−0.0019 (6)
C120.0277 (8)0.0362 (9)0.0226 (7)−0.0125 (7)0.0037 (6)−0.0010 (6)
C130.0301 (8)0.0246 (7)0.0270 (7)−0.0018 (6)0.0006 (6)−0.0048 (6)
C140.0207 (7)0.0254 (7)0.0300 (7)−0.0025 (6)−0.0049 (6)−0.0010 (6)
O1W0.0259 (6)0.0190 (5)0.0251 (5)−0.0034 (4)−0.0011 (4)0.0035 (4)
O1—C91.2164 (16)C7—H7A0.9300
N1—C91.3824 (17)C9—C101.5248 (19)
N1—C81.3827 (17)C10—C131.531 (2)
N1—H1N10.834 (17)C10—C111.5312 (19)
N2—C81.3266 (17)C10—C121.5353 (19)
N2—C11.3377 (16)C11—H11A0.9600
N3—C21.3305 (17)C11—H11B0.9600
N3—C11.3705 (17)C11—H11C0.9600
N3—H1N30.881 (18)C12—H12A0.9600
C1—C51.4039 (18)C12—H12B0.9600
C2—C31.401 (2)C12—H12C0.9600
C2—C141.4851 (19)C13—H13A0.9600
C3—C41.367 (2)C13—H13B0.9600
C3—H3A0.9300C13—H13C0.9600
C4—C51.4050 (19)C14—H14A0.9600
C4—H4A0.9300C14—H14B0.9600
C5—C61.4163 (19)C14—H14C0.9600
C6—C71.3565 (19)O1W—H1W10.89 (2)
C6—H6A0.9300O1W—H2W10.85 (2)
C7—C81.4236 (18)
C9—N1—C8127.52 (12)N1—C9—C10114.86 (12)
C9—N1—H1N1120.1 (12)C9—C10—C13109.50 (11)
C8—N1—H1N1112.1 (12)C9—C10—C11108.73 (12)
C8—N2—C1116.67 (11)C13—C10—C11109.72 (11)
C2—N3—C1123.38 (12)C9—C10—C12109.43 (11)
C2—N3—H1N3120.8 (12)C13—C10—C12110.14 (12)
C1—N3—H1N3115.8 (12)C11—C10—C12109.30 (11)
N2—C1—N3115.78 (11)C10—C11—H11A109.5
N2—C1—C5125.49 (12)C10—C11—H11B109.5
N3—C1—C5118.73 (12)H11A—C11—H11B109.5
N3—C2—C3118.86 (12)C10—C11—H11C109.5
N3—C2—C14118.48 (12)H11A—C11—H11C109.5
C3—C2—C14122.65 (13)H11B—C11—H11C109.5
C4—C3—C2120.34 (13)C10—C12—H12A109.5
C4—C3—H3A119.8C10—C12—H12B109.5
C2—C3—H3A119.8H12A—C12—H12B109.5
C3—C4—C5120.14 (13)C10—C12—H12C109.5
C3—C4—H4A119.9H12A—C12—H12C109.5
C5—C4—H4A119.9H12B—C12—H12C109.5
C1—C5—C4118.54 (12)C10—C13—H13A109.5
C1—C5—C6115.89 (12)C10—C13—H13B109.5
C4—C5—C6125.57 (12)H13A—C13—H13B109.5
C7—C6—C5119.89 (13)C10—C13—H13C109.5
C7—C6—H6A120.1H13A—C13—H13C109.5
C5—C6—H6A120.1H13B—C13—H13C109.5
C6—C7—C8118.81 (13)C2—C14—H14A109.5
C6—C7—H7A120.6C2—C14—H14B109.5
C8—C7—H7A120.6H14A—C14—H14B109.5
N2—C8—N1113.54 (12)C2—C14—H14C109.5
N2—C8—C7123.21 (12)H14A—C14—H14C109.5
N1—C8—C7123.21 (12)H14B—C14—H14C109.5
O1—C9—N1122.02 (13)H1W1—O1W—H2W1106.0 (17)
O1—C9—C10123.12 (12)
C8—N2—C1—N3−178.82 (11)C4—C5—C6—C7178.98 (13)
C8—N2—C1—C51.12 (19)C5—C6—C7—C81.0 (2)
C2—N3—C1—N2178.57 (12)C1—N2—C8—N1−179.49 (11)
C2—N3—C1—C5−1.37 (19)C1—N2—C8—C7−1.82 (19)
C1—N3—C2—C31.62 (19)C9—N1—C8—N2−165.13 (12)
C1—N3—C2—C14−178.93 (12)C9—N1—C8—C717.2 (2)
N3—C2—C3—C4−0.5 (2)C6—C7—C8—N20.8 (2)
C14—C2—C3—C4−179.88 (13)C6—C7—C8—N1178.26 (12)
C2—C3—C4—C5−0.9 (2)C8—N1—C9—O11.8 (2)
N2—C1—C5—C4−179.98 (12)C8—N1—C9—C10−177.97 (12)
N3—C1—C5—C4−0.04 (18)O1—C9—C10—C13117.22 (14)
N2—C1—C5—C60.55 (19)N1—C9—C10—C13−63.06 (15)
N3—C1—C5—C6−179.51 (11)O1—C9—C10—C11−2.65 (18)
C3—C4—C5—C11.12 (19)N1—C9—C10—C11177.07 (11)
C3—C4—C5—C6−179.46 (13)O1—C9—C10—C12−121.97 (15)
C1—C5—C6—C7−1.59 (18)N1—C9—C10—C1257.75 (15)
D—H···AD—HH···AD···AD—H···A
N1—H1N1···O1W0.833 (18)2.041 (17)2.8633 (16)169.1 (16)
N3—H1N3···Cl10.877 (18)2.213 (18)3.0870 (11)175.2 (16)
O1W—H1W1···Cl1i0.891 (19)2.219 (19)3.1091 (12)176.5 (18)
O1W—H2W1···Cl10.85 (2)2.61 (2)3.3960 (12)155.3 (16)
C7—H7A···O10.932.272.8298 (17)118
C11—H11A···O1ii0.962.543.3742 (18)145
C13—H13A···O1W0.962.603.4997 (18)157
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N1⋯O1W0.833 (18)2.041 (17)2.8633 (16)169.1 (16)
N3—H1N3⋯Cl10.877 (18)2.213 (18)3.0870 (11)175.2 (16)
O1W—H1W1⋯Cl1i0.891 (19)2.219 (19)3.1091 (12)176.5 (18)
O1W—H2W1⋯Cl10.85 (2)2.61 (2)3.3960 (12)155.3 (16)
C7—H7A⋯O10.932.272.8298 (17)118
C11—H11A⋯O1ii0.962.543.3742 (18)145
C13—H13A⋯O1W0.962.603.4997 (18)157

Symmetry codes: (i) ; (ii) .

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