| Literature DB >> 21581922 |
Abstract
The title compound, C(20)H(16)N(2), has been synthesized by the reaction of benzaldehyde with o-phenyl-endiamine and l-proline. The benzimidazole group makes a dihedral angle of 29.04 (1)° with the attached benzene ring, and is approximately perpendicular to the plane of the benzyl group [dihedral angle = 88.9 (1)°] The crystal packing exhibits no unusually short inter-molecular contacts.Entities:
Year: 2009 PMID: 21581922 PMCID: PMC2968276 DOI: 10.1107/S1600536809001238
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C20H16N2 | |
| Orthorhombic, | Mo |
| Hall symbol: P 2ac 2ab | Cell parameters from 1704 reflections |
| θ = 2.6–21.8° | |
| µ = 0.07 mm−1 | |
| Block, orange | |
| 0.63 × 0.55 × 0.47 mm |
| Bruker SMART CCD diffractometer | 1631 independent reflections |
| Radiation source: fine-focus sealed tube | 1221 reflections with |
| graphite | |
| φ and ω scans | θmax = 25.1°, θmin = 1.4° |
| Absorption correction: multi-scan ( | |
| 6729 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 1631 reflections | (Δ/σ)max < 0.001 |
| 199 parameters | Δρmax = 0.14 e Å−3 |
| 0 restraints | Δρmin = −0.16 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| N1 | 0.2537 (4) | −0.0386 (3) | 0.13584 (8) | 0.0404 (6) | |
| N2 | 0.5764 (4) | −0.1478 (3) | 0.14294 (9) | 0.0457 (7) | |
| C1 | 0.4421 (5) | −0.0765 (3) | 0.11598 (10) | 0.0383 (7) | |
| C2 | 0.4713 (5) | −0.1607 (3) | 0.18323 (11) | 0.0421 (8) | |
| C3 | 0.2703 (5) | −0.0923 (3) | 0.17932 (10) | 0.0406 (7) | |
| C4 | 0.1274 (6) | −0.0905 (4) | 0.21384 (12) | 0.0543 (9) | |
| H4 | −0.0051 | −0.0422 | 0.2110 | 0.065* | |
| C5 | 0.1920 (7) | −0.1639 (5) | 0.25254 (13) | 0.0678 (11) | |
| H5 | 0.1002 | −0.1667 | 0.2766 | 0.081* | |
| C6 | 0.3909 (7) | −0.2340 (5) | 0.25674 (13) | 0.0683 (12) | |
| H6 | 0.4288 | −0.2824 | 0.2835 | 0.082* | |
| C7 | 0.5324 (7) | −0.2341 (4) | 0.22272 (12) | 0.0588 (10) | |
| H7 | 0.6651 | −0.2816 | 0.2259 | 0.071* | |
| C8 | 0.0616 (5) | 0.0304 (4) | 0.11706 (11) | 0.0422 (8) | |
| H8A | −0.0587 | −0.0290 | 0.1290 | 0.051* | |
| H8B | 0.0630 | 0.0134 | 0.0853 | 0.051* | |
| C9 | 0.0341 (5) | 0.2130 (3) | 0.12639 (10) | 0.0352 (7) | |
| C10 | 0.1930 (5) | 0.3114 (4) | 0.14264 (11) | 0.0484 (9) | |
| H10 | 0.3250 | 0.2656 | 0.1482 | 0.058* | |
| C11 | 0.1592 (6) | 0.4782 (4) | 0.15079 (13) | 0.0574 (10) | |
| H11 | 0.2680 | 0.5430 | 0.1620 | 0.069* | |
| C12 | −0.0329 (6) | 0.5478 (4) | 0.14239 (12) | 0.0551 (9) | |
| H12 | −0.0550 | 0.6597 | 0.1477 | 0.066* | |
| C13 | −0.1927 (6) | 0.4519 (4) | 0.12605 (12) | 0.0559 (10) | |
| H13 | −0.3239 | 0.4988 | 0.1203 | 0.067* | |
| C14 | −0.1601 (5) | 0.2856 (4) | 0.11803 (11) | 0.0479 (9) | |
| H14 | −0.2698 | 0.2215 | 0.1069 | 0.057* | |
| C15 | 0.4924 (5) | −0.0445 (4) | 0.06922 (10) | 0.0422 (8) | |
| C16 | 0.6356 (5) | −0.1483 (4) | 0.04824 (12) | 0.0538 (9) | |
| H16 | 0.6957 | −0.2351 | 0.0640 | 0.065* | |
| C17 | 0.6904 (6) | −0.1255 (6) | 0.00461 (13) | 0.0721 (12) | |
| H17 | 0.7854 | −0.1972 | −0.0089 | 0.087* | |
| C18 | 0.6052 (7) | 0.0028 (5) | −0.01897 (14) | 0.0737 (13) | |
| H18 | 0.6398 | 0.0174 | −0.0487 | 0.088* | |
| C19 | 0.4695 (7) | 0.1087 (5) | 0.00140 (12) | 0.0730 (12) | |
| H19 | 0.4147 | 0.1976 | −0.0144 | 0.088* | |
| C20 | 0.4119 (6) | 0.0867 (4) | 0.04484 (11) | 0.0555 (9) | |
| H20 | 0.3183 | 0.1603 | 0.0580 | 0.067* |
| N1 | 0.0385 (15) | 0.0347 (14) | 0.0479 (17) | 0.0033 (12) | −0.0049 (14) | −0.0007 (12) |
| N2 | 0.0378 (14) | 0.0455 (16) | 0.0537 (17) | 0.0033 (13) | −0.0038 (14) | 0.0020 (13) |
| C1 | 0.0364 (17) | 0.0306 (16) | 0.0480 (18) | 0.0017 (14) | −0.0020 (16) | −0.0081 (13) |
| C2 | 0.0455 (19) | 0.0329 (16) | 0.048 (2) | −0.0025 (15) | −0.0023 (17) | −0.0001 (14) |
| C3 | 0.0487 (19) | 0.0315 (16) | 0.0416 (19) | −0.0025 (15) | −0.0015 (16) | 0.0004 (14) |
| C4 | 0.058 (2) | 0.051 (2) | 0.054 (2) | 0.0026 (18) | 0.0044 (19) | −0.0065 (18) |
| C5 | 0.082 (3) | 0.075 (3) | 0.047 (2) | −0.008 (3) | 0.014 (2) | −0.0034 (19) |
| C6 | 0.087 (3) | 0.070 (3) | 0.048 (2) | −0.006 (2) | −0.012 (2) | 0.0142 (19) |
| C7 | 0.062 (2) | 0.054 (2) | 0.061 (2) | 0.0028 (19) | −0.012 (2) | 0.0057 (18) |
| C8 | 0.0329 (16) | 0.0359 (16) | 0.058 (2) | 0.0006 (13) | −0.0057 (15) | −0.0050 (14) |
| C9 | 0.0362 (16) | 0.0308 (15) | 0.0386 (16) | −0.0016 (13) | 0.0000 (15) | 0.0013 (12) |
| C10 | 0.0438 (19) | 0.0394 (19) | 0.062 (2) | −0.0019 (15) | −0.0084 (18) | −0.0063 (15) |
| C11 | 0.062 (2) | 0.037 (2) | 0.073 (3) | −0.0080 (18) | −0.009 (2) | −0.0133 (17) |
| C12 | 0.064 (2) | 0.0332 (18) | 0.068 (2) | 0.0079 (18) | 0.006 (2) | −0.0025 (16) |
| C13 | 0.048 (2) | 0.048 (2) | 0.072 (2) | 0.0140 (17) | 0.000 (2) | 0.0042 (18) |
| C14 | 0.0406 (19) | 0.0438 (19) | 0.059 (2) | 0.0001 (15) | −0.0070 (17) | −0.0045 (16) |
| C15 | 0.0456 (19) | 0.0395 (16) | 0.0415 (18) | −0.0051 (16) | 0.0004 (15) | −0.0052 (14) |
| C16 | 0.051 (2) | 0.058 (2) | 0.052 (2) | 0.0088 (18) | −0.0033 (19) | −0.0058 (18) |
| C17 | 0.066 (3) | 0.085 (3) | 0.066 (3) | 0.009 (2) | 0.015 (2) | −0.018 (2) |
| C18 | 0.082 (3) | 0.095 (3) | 0.045 (2) | −0.008 (3) | 0.015 (2) | −0.002 (2) |
| C19 | 0.084 (3) | 0.081 (3) | 0.054 (2) | 0.003 (3) | −0.001 (2) | 0.014 (2) |
| C20 | 0.060 (2) | 0.056 (2) | 0.051 (2) | 0.0035 (18) | 0.0035 (19) | 0.0005 (17) |
| N1—C1 | 1.371 (4) | C10—C11 | 1.387 (5) |
| N1—C3 | 1.387 (4) | C10—H10 | 0.930 |
| N1—C8 | 1.454 (4) | C11—C12 | 1.365 (5) |
| N2—C1 | 1.311 (4) | C11—H11 | 0.930 |
| N2—C2 | 1.391 (4) | C12—C13 | 1.368 (5) |
| C1—C15 | 1.470 (4) | C12—H12 | 0.930 |
| C2—C7 | 1.387 (4) | C13—C14 | 1.382 (4) |
| C2—C3 | 1.394 (4) | C13—H13 | 0.930 |
| C3—C4 | 1.381 (4) | C14—H14 | 0.930 |
| C4—C5 | 1.373 (5) | C15—C20 | 1.388 (4) |
| C4—H4 | 0.930 | C15—C16 | 1.389 (4) |
| C5—C6 | 1.388 (5) | C16—C17 | 1.375 (5) |
| C5—H5 | 0.930 | C16—H16 | 0.930 |
| C6—C7 | 1.363 (5) | C17—C18 | 1.369 (6) |
| C6—H6 | 0.930 | C17—H17 | 0.930 |
| C7—H7 | 0.930 | C18—C19 | 1.360 (6) |
| C8—C9 | 1.513 (4) | C18—H18 | 0.930 |
| C8—H8A | 0.970 | C19—C20 | 1.373 (5) |
| C8—H8B | 0.970 | C19—H19 | 0.930 |
| C9—C10 | 1.374 (4) | C20—H20 | 0.930 |
| C9—C14 | 1.387 (4) | ||
| C1—N1—C3 | 106.1 (2) | C9—C10—C11 | 120.8 (3) |
| C1—N1—C8 | 130.1 (3) | C9—C10—H10 | 119.6 |
| C3—N1—C8 | 123.6 (3) | C11—C10—H10 | 119.6 |
| C1—N2—C2 | 105.4 (3) | C12—C11—C10 | 120.4 (3) |
| N2—C1—N1 | 113.1 (3) | C12—C11—H11 | 119.8 |
| N2—C1—C15 | 122.2 (3) | C10—C11—H11 | 119.8 |
| N1—C1—C15 | 124.7 (3) | C11—C12—C13 | 119.6 (3) |
| C7—C2—C3 | 119.8 (3) | C11—C12—H12 | 120.2 |
| C7—C2—N2 | 130.6 (3) | C13—C12—H12 | 120.2 |
| C3—C2—N2 | 109.5 (3) | C12—C13—C14 | 120.3 (3) |
| C4—C3—N1 | 131.4 (3) | C12—C13—H13 | 119.9 |
| C4—C3—C2 | 122.7 (3) | C14—C13—H13 | 119.9 |
| N1—C3—C2 | 105.9 (3) | C13—C14—C9 | 120.8 (3) |
| C5—C4—C3 | 116.2 (4) | C13—C14—H14 | 119.6 |
| C5—C4—H4 | 121.9 | C9—C14—H14 | 119.6 |
| C3—C4—H4 | 121.9 | C20—C15—C16 | 117.4 (3) |
| C4—C5—C6 | 121.7 (4) | C20—C15—C1 | 124.3 (3) |
| C4—C5—H5 | 119.2 | C16—C15—C1 | 118.2 (3) |
| C6—C5—H5 | 119.2 | C17—C16—C15 | 121.4 (3) |
| C7—C6—C5 | 121.9 (4) | C17—C16—H16 | 119.3 |
| C7—C6—H6 | 119.0 | C15—C16—H16 | 119.3 |
| C5—C6—H6 | 119.0 | C18—C17—C16 | 120.0 (4) |
| C6—C7—C2 | 117.6 (4) | C18—C17—H17 | 120.0 |
| C6—C7—H7 | 121.2 | C16—C17—H17 | 120.0 |
| C2—C7—H7 | 121.2 | C19—C18—C17 | 119.4 (4) |
| N1—C8—C9 | 113.4 (2) | C19—C18—H18 | 120.3 |
| N1—C8—H8A | 108.9 | C17—C18—H18 | 120.3 |
| C9—C8—H8A | 108.9 | C18—C19—C20 | 121.2 (4) |
| N1—C8—H8B | 108.9 | C18—C19—H19 | 119.4 |
| C9—C8—H8B | 108.9 | C20—C19—H19 | 119.4 |
| H8A—C8—H8B | 107.7 | C19—C20—C15 | 120.5 (3) |
| C10—C9—C14 | 118.1 (3) | C19—C20—H20 | 119.7 |
| C10—C9—C8 | 123.2 (3) | C15—C20—H20 | 119.7 |
| C14—C9—C8 | 118.8 (3) | ||
| C2—N2—C1—N1 | 0.9 (3) | C3—N1—C8—C9 | 83.9 (3) |
| C2—N2—C1—C15 | −178.4 (3) | N1—C8—C9—C10 | 12.9 (4) |
| C3—N1—C1—N2 | −0.6 (3) | N1—C8—C9—C14 | −167.4 (3) |
| C8—N1—C1—N2 | −175.6 (3) | C14—C9—C10—C11 | 0.6 (5) |
| C3—N1—C1—C15 | 178.6 (3) | C8—C9—C10—C11 | −179.7 (3) |
| C8—N1—C1—C15 | 3.6 (5) | C9—C10—C11—C12 | −0.6 (6) |
| C1—N2—C2—C7 | 175.9 (3) | C10—C11—C12—C13 | 0.3 (6) |
| C1—N2—C2—C3 | −0.8 (3) | C11—C12—C13—C14 | −0.1 (6) |
| C1—N1—C3—C4 | −177.9 (3) | C12—C13—C14—C9 | 0.1 (5) |
| C8—N1—C3—C4 | −2.4 (5) | C10—C9—C14—C13 | −0.3 (5) |
| C1—N1—C3—C2 | 0.0 (3) | C8—C9—C14—C13 | 180.0 (3) |
| C8—N1—C3—C2 | 175.5 (2) | N2—C1—C15—C20 | −149.6 (3) |
| C7—C2—C3—C4 | 1.6 (4) | N1—C1—C15—C20 | 31.2 (5) |
| N2—C2—C3—C4 | 178.6 (3) | N2—C1—C15—C16 | 28.0 (4) |
| C7—C2—C3—N1 | −176.6 (3) | N1—C1—C15—C16 | −151.2 (3) |
| N2—C2—C3—N1 | 0.5 (3) | C20—C15—C16—C17 | −2.1 (5) |
| N1—C3—C4—C5 | 176.1 (3) | C1—C15—C16—C17 | −179.9 (3) |
| C2—C3—C4—C5 | −1.5 (5) | C15—C16—C17—C18 | 0.7 (6) |
| C3—C4—C5—C6 | 0.8 (5) | C16—C17—C18—C19 | 1.2 (7) |
| C4—C5—C6—C7 | −0.1 (6) | C17—C18—C19—C20 | −1.8 (6) |
| C5—C6—C7—C2 | 0.1 (5) | C18—C19—C20—C15 | 0.4 (6) |
| C3—C2—C7—C6 | −0.8 (5) | C16—C15—C20—C19 | 1.5 (5) |
| N2—C2—C7—C6 | −177.2 (3) | C1—C15—C20—C19 | 179.2 (3) |
| C1—N1—C8—C9 | −101.8 (4) |