Literature DB >> 21581922

1-Benzyl-2-phenyl-1H-benzimidazole.

Lingqian Kong1.   

Abstract

The title compound, C(20)H(16)N(2), has been synthesized by the reaction of benzaldehyde with o-phenyl-endiamine and l-proline. The benzimidazole group makes a dihedral angle of 29.04 (1)° with the attached benzene ring, and is approximately perpendicular to the plane of the benzyl group [dihedral angle = 88.9 (1)°] The crystal packing exhibits no unusually short inter-molecular contacts.

Entities:  

Year:  2009        PMID: 21581922      PMCID: PMC2968276          DOI: 10.1107/S1600536809001238

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background literature concerning benzimidazole compounds, see: Zarrinmayeh et al. (1998 ▶); Spasov et al. (1999 ▶). For a related structure, see: Yang et al. (2007 ▶).

Experimental

Crystal data

C20H16N2 M = 284.35 Orthorhombic, a = 6.338 (3) Å b = 8.085 (3) Å c = 30.190 (12) Å V = 1547.0 (10) Å3 Z = 4 Mo Kα radiation μ = 0.07 mm−1 T = 298 (2) K 0.63 × 0.55 × 0.47 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.956, T max = 0.967 6729 measured reflections 1631 independent reflections 1221 reflections with I > 2σ(I) R int = 0.073

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.115 S = 1.14 1631 reflections 199 parameters H-atom parameters constrained Δρmax = 0.14 e Å−3 Δρmin = −0.16 e Å−3 Data collection: SMART (Bruker, 1997 ▶); cell refinement: SAINT (Bruker, 1997 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809001238/bi2334sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809001238/bi2334Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H16N2F(000) = 600
Mr = 284.35Dx = 1.221 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 1704 reflections
a = 6.338 (3) Åθ = 2.6–21.8°
b = 8.085 (3) ŵ = 0.07 mm1
c = 30.190 (12) ÅT = 298 K
V = 1547.0 (10) Å3Block, orange
Z = 40.63 × 0.55 × 0.47 mm
Bruker SMART CCD diffractometer1631 independent reflections
Radiation source: fine-focus sealed tube1221 reflections with I > 2σ(I)
graphiteRint = 0.073
φ and ω scansθmax = 25.1°, θmin = 1.4°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −7→7
Tmin = 0.956, Tmax = 0.967k = −9→7
6729 measured reflectionsl = −26→36
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.115H-atom parameters constrained
S = 1.14w = 1/[σ2(Fo2) + (0.0509P)2] where P = (Fo2 + 2Fc2)/3
1631 reflections(Δ/σ)max < 0.001
199 parametersΔρmax = 0.14 e Å3
0 restraintsΔρmin = −0.16 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.2537 (4)−0.0386 (3)0.13584 (8)0.0404 (6)
N20.5764 (4)−0.1478 (3)0.14294 (9)0.0457 (7)
C10.4421 (5)−0.0765 (3)0.11598 (10)0.0383 (7)
C20.4713 (5)−0.1607 (3)0.18323 (11)0.0421 (8)
C30.2703 (5)−0.0923 (3)0.17932 (10)0.0406 (7)
C40.1274 (6)−0.0905 (4)0.21384 (12)0.0543 (9)
H4−0.0051−0.04220.21100.065*
C50.1920 (7)−0.1639 (5)0.25254 (13)0.0678 (11)
H50.1002−0.16670.27660.081*
C60.3909 (7)−0.2340 (5)0.25674 (13)0.0683 (12)
H60.4288−0.28240.28350.082*
C70.5324 (7)−0.2341 (4)0.22272 (12)0.0588 (10)
H70.6651−0.28160.22590.071*
C80.0616 (5)0.0304 (4)0.11706 (11)0.0422 (8)
H8A−0.0587−0.02900.12900.051*
H8B0.06300.01340.08530.051*
C90.0341 (5)0.2130 (3)0.12639 (10)0.0352 (7)
C100.1930 (5)0.3114 (4)0.14264 (11)0.0484 (9)
H100.32500.26560.14820.058*
C110.1592 (6)0.4782 (4)0.15079 (13)0.0574 (10)
H110.26800.54300.16200.069*
C12−0.0329 (6)0.5478 (4)0.14239 (12)0.0551 (9)
H12−0.05500.65970.14770.066*
C13−0.1927 (6)0.4519 (4)0.12605 (12)0.0559 (10)
H13−0.32390.49880.12030.067*
C14−0.1601 (5)0.2856 (4)0.11803 (11)0.0479 (9)
H14−0.26980.22150.10690.057*
C150.4924 (5)−0.0445 (4)0.06922 (10)0.0422 (8)
C160.6356 (5)−0.1483 (4)0.04824 (12)0.0538 (9)
H160.6957−0.23510.06400.065*
C170.6904 (6)−0.1255 (6)0.00461 (13)0.0721 (12)
H170.7854−0.1972−0.00890.087*
C180.6052 (7)0.0028 (5)−0.01897 (14)0.0737 (13)
H180.63980.0174−0.04870.088*
C190.4695 (7)0.1087 (5)0.00140 (12)0.0730 (12)
H190.41470.1976−0.01440.088*
C200.4119 (6)0.0867 (4)0.04484 (11)0.0555 (9)
H200.31830.16030.05800.067*
U11U22U33U12U13U23
N10.0385 (15)0.0347 (14)0.0479 (17)0.0033 (12)−0.0049 (14)−0.0007 (12)
N20.0378 (14)0.0455 (16)0.0537 (17)0.0033 (13)−0.0038 (14)0.0020 (13)
C10.0364 (17)0.0306 (16)0.0480 (18)0.0017 (14)−0.0020 (16)−0.0081 (13)
C20.0455 (19)0.0329 (16)0.048 (2)−0.0025 (15)−0.0023 (17)−0.0001 (14)
C30.0487 (19)0.0315 (16)0.0416 (19)−0.0025 (15)−0.0015 (16)0.0004 (14)
C40.058 (2)0.051 (2)0.054 (2)0.0026 (18)0.0044 (19)−0.0065 (18)
C50.082 (3)0.075 (3)0.047 (2)−0.008 (3)0.014 (2)−0.0034 (19)
C60.087 (3)0.070 (3)0.048 (2)−0.006 (2)−0.012 (2)0.0142 (19)
C70.062 (2)0.054 (2)0.061 (2)0.0028 (19)−0.012 (2)0.0057 (18)
C80.0329 (16)0.0359 (16)0.058 (2)0.0006 (13)−0.0057 (15)−0.0050 (14)
C90.0362 (16)0.0308 (15)0.0386 (16)−0.0016 (13)0.0000 (15)0.0013 (12)
C100.0438 (19)0.0394 (19)0.062 (2)−0.0019 (15)−0.0084 (18)−0.0063 (15)
C110.062 (2)0.037 (2)0.073 (3)−0.0080 (18)−0.009 (2)−0.0133 (17)
C120.064 (2)0.0332 (18)0.068 (2)0.0079 (18)0.006 (2)−0.0025 (16)
C130.048 (2)0.048 (2)0.072 (2)0.0140 (17)0.000 (2)0.0042 (18)
C140.0406 (19)0.0438 (19)0.059 (2)0.0001 (15)−0.0070 (17)−0.0045 (16)
C150.0456 (19)0.0395 (16)0.0415 (18)−0.0051 (16)0.0004 (15)−0.0052 (14)
C160.051 (2)0.058 (2)0.052 (2)0.0088 (18)−0.0033 (19)−0.0058 (18)
C170.066 (3)0.085 (3)0.066 (3)0.009 (2)0.015 (2)−0.018 (2)
C180.082 (3)0.095 (3)0.045 (2)−0.008 (3)0.015 (2)−0.002 (2)
C190.084 (3)0.081 (3)0.054 (2)0.003 (3)−0.001 (2)0.014 (2)
C200.060 (2)0.056 (2)0.051 (2)0.0035 (18)0.0035 (19)0.0005 (17)
N1—C11.371 (4)C10—C111.387 (5)
N1—C31.387 (4)C10—H100.930
N1—C81.454 (4)C11—C121.365 (5)
N2—C11.311 (4)C11—H110.930
N2—C21.391 (4)C12—C131.368 (5)
C1—C151.470 (4)C12—H120.930
C2—C71.387 (4)C13—C141.382 (4)
C2—C31.394 (4)C13—H130.930
C3—C41.381 (4)C14—H140.930
C4—C51.373 (5)C15—C201.388 (4)
C4—H40.930C15—C161.389 (4)
C5—C61.388 (5)C16—C171.375 (5)
C5—H50.930C16—H160.930
C6—C71.363 (5)C17—C181.369 (6)
C6—H60.930C17—H170.930
C7—H70.930C18—C191.360 (6)
C8—C91.513 (4)C18—H180.930
C8—H8A0.970C19—C201.373 (5)
C8—H8B0.970C19—H190.930
C9—C101.374 (4)C20—H200.930
C9—C141.387 (4)
C1—N1—C3106.1 (2)C9—C10—C11120.8 (3)
C1—N1—C8130.1 (3)C9—C10—H10119.6
C3—N1—C8123.6 (3)C11—C10—H10119.6
C1—N2—C2105.4 (3)C12—C11—C10120.4 (3)
N2—C1—N1113.1 (3)C12—C11—H11119.8
N2—C1—C15122.2 (3)C10—C11—H11119.8
N1—C1—C15124.7 (3)C11—C12—C13119.6 (3)
C7—C2—C3119.8 (3)C11—C12—H12120.2
C7—C2—N2130.6 (3)C13—C12—H12120.2
C3—C2—N2109.5 (3)C12—C13—C14120.3 (3)
C4—C3—N1131.4 (3)C12—C13—H13119.9
C4—C3—C2122.7 (3)C14—C13—H13119.9
N1—C3—C2105.9 (3)C13—C14—C9120.8 (3)
C5—C4—C3116.2 (4)C13—C14—H14119.6
C5—C4—H4121.9C9—C14—H14119.6
C3—C4—H4121.9C20—C15—C16117.4 (3)
C4—C5—C6121.7 (4)C20—C15—C1124.3 (3)
C4—C5—H5119.2C16—C15—C1118.2 (3)
C6—C5—H5119.2C17—C16—C15121.4 (3)
C7—C6—C5121.9 (4)C17—C16—H16119.3
C7—C6—H6119.0C15—C16—H16119.3
C5—C6—H6119.0C18—C17—C16120.0 (4)
C6—C7—C2117.6 (4)C18—C17—H17120.0
C6—C7—H7121.2C16—C17—H17120.0
C2—C7—H7121.2C19—C18—C17119.4 (4)
N1—C8—C9113.4 (2)C19—C18—H18120.3
N1—C8—H8A108.9C17—C18—H18120.3
C9—C8—H8A108.9C18—C19—C20121.2 (4)
N1—C8—H8B108.9C18—C19—H19119.4
C9—C8—H8B108.9C20—C19—H19119.4
H8A—C8—H8B107.7C19—C20—C15120.5 (3)
C10—C9—C14118.1 (3)C19—C20—H20119.7
C10—C9—C8123.2 (3)C15—C20—H20119.7
C14—C9—C8118.8 (3)
C2—N2—C1—N10.9 (3)C3—N1—C8—C983.9 (3)
C2—N2—C1—C15−178.4 (3)N1—C8—C9—C1012.9 (4)
C3—N1—C1—N2−0.6 (3)N1—C8—C9—C14−167.4 (3)
C8—N1—C1—N2−175.6 (3)C14—C9—C10—C110.6 (5)
C3—N1—C1—C15178.6 (3)C8—C9—C10—C11−179.7 (3)
C8—N1—C1—C153.6 (5)C9—C10—C11—C12−0.6 (6)
C1—N2—C2—C7175.9 (3)C10—C11—C12—C130.3 (6)
C1—N2—C2—C3−0.8 (3)C11—C12—C13—C14−0.1 (6)
C1—N1—C3—C4−177.9 (3)C12—C13—C14—C90.1 (5)
C8—N1—C3—C4−2.4 (5)C10—C9—C14—C13−0.3 (5)
C1—N1—C3—C20.0 (3)C8—C9—C14—C13180.0 (3)
C8—N1—C3—C2175.5 (2)N2—C1—C15—C20−149.6 (3)
C7—C2—C3—C41.6 (4)N1—C1—C15—C2031.2 (5)
N2—C2—C3—C4178.6 (3)N2—C1—C15—C1628.0 (4)
C7—C2—C3—N1−176.6 (3)N1—C1—C15—C16−151.2 (3)
N2—C2—C3—N10.5 (3)C20—C15—C16—C17−2.1 (5)
N1—C3—C4—C5176.1 (3)C1—C15—C16—C17−179.9 (3)
C2—C3—C4—C5−1.5 (5)C15—C16—C17—C180.7 (6)
C3—C4—C5—C60.8 (5)C16—C17—C18—C191.2 (7)
C4—C5—C6—C7−0.1 (6)C17—C18—C19—C20−1.8 (6)
C5—C6—C7—C20.1 (5)C18—C19—C20—C150.4 (6)
C3—C2—C7—C6−0.8 (5)C16—C15—C20—C191.5 (5)
N2—C2—C7—C6−177.2 (3)C1—C15—C20—C19179.2 (3)
C1—N1—C8—C9−101.8 (4)
  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis and evaluation of a series of novel 2-[(4-chlorophenoxy)methyl]benzimidazoles as selective neuropeptide Y Y1 receptor antagonists.

Authors:  H Zarrinmayeh; A M Nunes; P L Ornstein; D M Zimmerman; M B Arnold; D A Schober; S L Gackenheimer; R F Bruns; P A Hipskind; T C Britton; B E Cantrell; D R Gehlert
Journal:  J Med Chem       Date:  1998-07-16       Impact factor: 7.446

  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.