Literature DB >> 21581912

Norfloxacin sesquihydrate.

Nittala V Ravindra, Gopal M Panpalia, A R P Sarma Jagarlapudi.   

Abstract

IN THE CRYSTAL STRUCTURE OF THE TITLE COMPOUND [SYSTEMATIC NAME: 1-ethyl-6-fluoro-4-oxo-7-(piperazin-4-ium-1-yl)-1,4-dihydro-quinoline-3-carboxyl-ate sesquihydrate], C(16)H(18)FN(3)O(3)·1.42H(2)O, N-H⋯O and O-H⋯O hydrogen bonds assemble the mol-ecules in a two-dimensional layered corrugated sheet structure parallel to the b axis. The water mol-ecules are disordered [occupancies 0.741 (11) and 0.259 (11)].

Entities:  

Year:  2009        PMID: 21581912      PMCID: PMC2968347          DOI: 10.1107/S160053680900066X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Yuasa et al. (1982 ▶); Windholz et al. (1983 ▶); Katdare et al. (1986 ▶); Šuštar et al. (1993 ▶); Florence et al. (2000 ▶); Barbas et al. (2006 ▶); Basavoju et al. (2006 ▶); Barbas et al. (2007 ▶); Chongcharoen et al. (2008 ▶)

Experimental

Crystal data

C16H18FN3O3·1.42H2O M = 344.12 Monoclinic, a = 8.8434 (18) Å b = 22.312 (5) Å c = 8.7564 (18) Å β = 109.35 (3)° V = 1630.2 (7) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 298 (2) K 0.20 × 0.20 × 0.10 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: none 16819 measured reflections 3228 independent reflections 2553 reflections with I > 2σ(I) R int = 0.044

Refinement

R[F 2 > 2σ(F 2)] = 0.081 wR(F 2) = 0.218 S = 1.03 3228 reflections 253 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.37 e Å−3 Δρmin = −0.26 e Å−3 Data collection: SMART (Bruker, 1997 ▶); cell refinement: SAINT (Bruker, 1997 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053680900066X/gw2057sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680900066X/gw2057Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H18FN3O3·1.42H2OF(000) = 725.5
Mr = 344.12Dx = 1.402 Mg m3
Monoclinic, P21/cMelting point: 492.5(3) K
Hall symbol: -P 2ybcMo Kα radiation, λ = 0.71073 Å
a = 8.8434 (18) ÅCell parameters from 3228 reflections
b = 22.312 (5) Åθ = 1.8–26.1°
c = 8.7564 (18) ŵ = 0.11 mm1
β = 109.35 (3)°T = 298 K
V = 1630.2 (7) Å3Block, pale yellow
Z = 40.20 × 0.20 × 0.10 mm
Bruker SMART CCD area-detector diffractometer2553 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.044
graphiteθmax = 26.1°, θmin = 1.8°
φ and ω scansh = −10→10
16819 measured reflectionsk = −27→27
3228 independent reflectionsl = −10→10
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.081Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.218H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.1124P)2 + 1.8021P] where P = (Fo2 + 2Fc2)/3
3228 reflections(Δ/σ)max < 0.001
253 parametersΔρmax = 0.37 e Å3
0 restraintsΔρmin = −0.26 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
F10.2851 (2)0.73405 (8)0.1027 (2)0.0442 (5)
C90.5896 (4)0.69034 (13)0.4775 (4)0.0313 (7)
H90.63400.65630.53650.038*
N10.7787 (3)0.75248 (11)0.6815 (3)0.0313 (6)
C80.4641 (3)0.68388 (13)0.3326 (4)0.0302 (7)
C100.6513 (4)0.74655 (12)0.5373 (4)0.0282 (6)
N20.4098 (3)0.62818 (11)0.2644 (3)0.0338 (6)
C60.4554 (4)0.79261 (13)0.3075 (4)0.0304 (7)
H60.40790.82650.24980.037*
C70.4011 (4)0.73759 (13)0.2506 (4)0.0312 (7)
C40.6462 (4)0.85899 (13)0.5062 (4)0.0313 (7)
C10.8307 (4)0.80766 (13)0.7354 (4)0.0327 (7)
H10.91280.81010.83440.039*
C20.7747 (4)0.86019 (13)0.6590 (4)0.0315 (7)
O10.9214 (3)0.91437 (11)0.8908 (3)0.0543 (7)
O30.5884 (3)0.90336 (10)0.4227 (3)0.0509 (7)
O20.8443 (3)0.96306 (11)0.6594 (3)0.0563 (8)
C50.5828 (3)0.79879 (12)0.4528 (3)0.0278 (6)
C30.8524 (4)0.91709 (13)0.7418 (4)0.0330 (7)
C140.4966 (4)0.57470 (13)0.3422 (4)0.0378 (8)
H14A0.46220.56330.43250.045*
H14B0.61050.58320.38380.045*
N30.2914 (3)0.51183 (11)0.1476 (3)0.0382 (7)
H3A0.25280.49720.22320.046*
H3B0.27620.48400.06970.046*
C150.8690 (4)0.70072 (14)0.7748 (4)0.0391 (8)
H15A0.90770.71090.88900.047*
H15B0.79720.66670.76070.047*
C120.2026 (4)0.56722 (14)0.0767 (4)0.0427 (8)
H12A0.08840.55890.03670.051*
H12B0.23440.5803−0.01380.051*
C110.2368 (4)0.61614 (14)0.2023 (4)0.0381 (8)
H11A0.17960.65230.15450.046*
H11B0.20020.60390.29040.046*
C130.4652 (4)0.52396 (14)0.2223 (4)0.0393 (8)
H13A0.50990.53390.13810.047*
H13B0.51860.48810.27670.047*
C161.0069 (5)0.6835 (2)0.7236 (5)0.0635 (12)
H16A0.96840.67010.61320.095*
H16B1.06560.65170.79160.095*
H16C1.07580.71750.73270.095*
O4A0.1091 (6)0.4638 (2)0.3166 (6)0.0616 (18)0.741 (11)
O50.2349 (14)0.5705 (7)0.6166 (16)0.076 (3)0.423 (6)
O4B0.1742 (14)0.4991 (6)0.4249 (17)0.059 (5)0.259 (11)
H4B0.134 (8)0.463 (3)0.440 (8)0.13 (2)*
H4A0.020 (11)0.489 (4)0.282 (10)0.19 (4)*
U11U22U33U12U13U23
F10.0476 (11)0.0359 (10)0.0394 (11)−0.0060 (8)0.0016 (9)−0.0039 (8)
C90.0353 (16)0.0209 (14)0.0396 (17)0.0036 (12)0.0149 (13)0.0037 (12)
N10.0330 (14)0.0235 (12)0.0355 (14)0.0007 (10)0.0086 (11)0.0014 (10)
C80.0312 (15)0.0244 (15)0.0392 (17)−0.0002 (12)0.0170 (13)−0.0039 (12)
C100.0320 (15)0.0221 (14)0.0342 (16)−0.0016 (11)0.0160 (13)−0.0018 (12)
N20.0301 (14)0.0221 (13)0.0485 (16)−0.0002 (10)0.0118 (12)−0.0066 (11)
C60.0339 (16)0.0232 (14)0.0351 (16)0.0020 (12)0.0128 (13)0.0033 (12)
C70.0298 (15)0.0320 (16)0.0313 (16)−0.0018 (12)0.0094 (12)−0.0039 (12)
C40.0355 (16)0.0229 (14)0.0350 (16)−0.0020 (12)0.0112 (13)−0.0017 (12)
C10.0321 (16)0.0328 (16)0.0314 (16)0.0006 (13)0.0082 (12)−0.0010 (13)
C20.0330 (16)0.0275 (15)0.0348 (16)−0.0018 (12)0.0123 (13)−0.0026 (12)
O10.0660 (17)0.0436 (15)0.0409 (14)−0.0094 (12)0.0010 (12)−0.0095 (11)
O30.0640 (17)0.0217 (11)0.0489 (15)−0.0043 (11)−0.0056 (12)0.0063 (10)
O20.0724 (18)0.0306 (13)0.0495 (15)−0.0186 (12)−0.0017 (13)0.0018 (11)
C50.0313 (15)0.0228 (14)0.0314 (15)−0.0014 (11)0.0134 (12)−0.0009 (11)
C30.0289 (15)0.0274 (16)0.0406 (18)0.0006 (12)0.0086 (13)−0.0054 (13)
C140.0335 (16)0.0258 (15)0.051 (2)0.0005 (13)0.0106 (14)−0.0029 (14)
N30.0458 (16)0.0211 (13)0.0436 (16)−0.0045 (11)0.0093 (13)−0.0048 (11)
C150.0448 (19)0.0286 (17)0.0395 (18)0.0020 (14)0.0080 (14)0.0079 (13)
C120.0379 (18)0.0264 (16)0.054 (2)−0.0032 (13)0.0015 (15)−0.0004 (14)
C110.0303 (17)0.0266 (16)0.056 (2)−0.0009 (12)0.0121 (14)−0.0022 (14)
C130.0409 (18)0.0226 (15)0.054 (2)0.0026 (13)0.0153 (15)−0.0055 (14)
C160.060 (3)0.063 (3)0.072 (3)0.025 (2)0.029 (2)0.021 (2)
O4A0.061 (3)0.058 (3)0.071 (3)0.020 (2)0.031 (2)0.024 (3)
O50.048 (6)0.101 (10)0.066 (8)0.015 (6)0.003 (5)−0.015 (7)
O4B0.052 (7)0.060 (9)0.071 (10)0.007 (6)0.030 (6)0.038 (8)
F1—C71.361 (3)C14—C131.506 (4)
C9—C81.389 (4)C14—H14A0.9700
C9—C101.398 (4)C14—H14B0.9700
C9—H90.9300N3—C131.483 (4)
N1—C11.344 (4)N3—C121.485 (4)
N1—C101.392 (4)N3—H3A0.9000
N1—C151.486 (4)N3—H3B0.9000
C8—N21.393 (4)C15—C161.483 (5)
C8—C71.413 (4)C15—H15A0.9700
C10—C51.406 (4)C15—H15B0.9700
N2—C141.459 (4)C12—C111.507 (5)
N2—C111.469 (4)C12—H12A0.9700
C6—C71.352 (4)C12—H12B0.9700
C6—C51.399 (4)C11—H11A0.9700
C6—H60.9300C11—H11B0.9700
C4—O31.236 (4)C13—H13A0.9700
C4—C21.441 (4)C13—H13B0.9700
C4—C51.471 (4)C16—H16A0.9600
C1—C21.359 (4)C16—H16B0.9600
C1—H10.9300C16—H16C0.9600
C2—C31.510 (4)O4A—H4B1.03 (7)
O1—C31.245 (4)O4A—H4A0.93 (10)
O2—C31.242 (4)O4B—H4B0.91 (7)
C8—C9—C10122.0 (3)C13—C14—H14B109.7
C8—C9—H9119.0H14A—C14—H14B108.2
C10—C9—H9119.0C13—N3—C12111.1 (2)
C1—N1—C10119.0 (2)C13—N3—H3A109.4
C1—N1—C15117.4 (3)C12—N3—H3A109.4
C10—N1—C15123.4 (2)C13—N3—H3B109.4
C9—C8—N2122.8 (3)C12—N3—H3B109.4
C9—C8—C7115.9 (3)H3A—N3—H3B108.0
N2—C8—C7121.1 (3)C16—C15—N1112.4 (3)
N1—C10—C9121.6 (3)C16—C15—H15A109.1
N1—C10—C5118.5 (2)N1—C15—H15A109.1
C9—C10—C5120.0 (3)C16—C15—H15B109.1
C8—N2—C14118.4 (3)N1—C15—H15B109.1
C8—N2—C11119.4 (2)H15A—C15—H15B107.9
C14—N2—C11110.2 (2)N3—C12—C11110.3 (3)
C7—C6—C5120.4 (3)N3—C12—H12A109.6
C7—C6—H6119.8C11—C12—H12A109.6
C5—C6—H6119.8N3—C12—H12B109.6
C6—C7—F1117.9 (3)C11—C12—H12B109.6
C6—C7—C8123.4 (3)H12A—C12—H12B108.1
F1—C7—C8118.7 (3)N2—C11—C12109.6 (3)
O3—C4—C2125.4 (3)N2—C11—H11A109.7
O3—C4—C5120.3 (3)C12—C11—H11A109.7
C2—C4—C5114.4 (3)N2—C11—H11B109.7
N1—C1—C2126.2 (3)C12—C11—H11B109.7
N1—C1—H1116.9H11A—C11—H11B108.2
C2—C1—H1116.9N3—C13—C14111.6 (3)
C1—C2—C4119.2 (3)N3—C13—H13A109.3
C1—C2—C3117.1 (3)C14—C13—H13A109.3
C4—C2—C3123.7 (3)N3—C13—H13B109.3
C6—C5—C10118.3 (3)C14—C13—H13B109.3
C6—C5—C4119.1 (3)H13A—C13—H13B108.0
C10—C5—C4122.5 (3)C15—C16—H16A109.5
O2—C3—O1124.3 (3)C15—C16—H16B109.5
O2—C3—C2119.1 (3)H16A—C16—H16B109.5
O1—C3—C2116.7 (3)C15—C16—H16C109.5
N2—C14—C13110.0 (3)H16A—C16—H16C109.5
N2—C14—H14A109.7H16B—C16—H16C109.5
C13—C14—H14A109.7H4B—O4A—H4A102 (6)
N2—C14—H14B109.7
C10—C9—C8—N2174.5 (3)C5—C4—C2—C3−176.7 (3)
C10—C9—C8—C7−0.8 (4)C7—C6—C5—C10−0.3 (4)
C1—N1—C10—C9−178.4 (3)C7—C6—C5—C4176.0 (3)
C15—N1—C10—C96.1 (4)N1—C10—C5—C6179.7 (3)
C1—N1—C10—C50.5 (4)C9—C10—C5—C6−1.4 (4)
C15—N1—C10—C5−175.0 (3)N1—C10—C5—C43.5 (4)
C8—C9—C10—N1−179.1 (3)C9—C10—C5—C4−177.6 (3)
C8—C9—C10—C52.0 (4)O3—C4—C5—C6−0.7 (4)
C9—C8—N2—C14−4.8 (4)C2—C4—C5—C6178.6 (3)
C7—C8—N2—C14170.3 (3)O3—C4—C5—C10175.5 (3)
C9—C8—N2—C11134.2 (3)C2—C4—C5—C10−5.2 (4)
C7—C8—N2—C11−50.7 (4)C1—C2—C3—O2157.3 (3)
C5—C6—C7—F1−175.1 (3)C4—C2—C3—O2−22.9 (5)
C5—C6—C7—C81.6 (5)C1—C2—C3—O1−22.6 (4)
C9—C8—C7—C6−1.0 (4)C4—C2—C3—O1157.2 (3)
N2—C8—C7—C6−176.4 (3)C8—N2—C14—C13−157.6 (3)
C9—C8—C7—F1175.7 (3)C11—N2—C14—C1359.9 (3)
N2—C8—C7—F10.3 (4)C1—N1—C15—C16−86.4 (4)
C10—N1—C1—C2−2.7 (5)C10—N1—C15—C1689.2 (4)
C15—N1—C1—C2173.1 (3)C13—N3—C12—C11−54.6 (4)
N1—C1—C2—C40.7 (5)C8—N2—C11—C12156.3 (3)
N1—C1—C2—C3−179.5 (3)C14—N2—C11—C12−61.6 (3)
O3—C4—C2—C1−177.6 (3)N3—C12—C11—N258.6 (4)
C5—C4—C2—C13.1 (4)C12—N3—C13—C1453.4 (4)
O3—C4—C2—C32.5 (5)N2—C14—C13—N3−55.8 (4)
D—H···AD—HH···AD···AD—H···A
N3—H3A···O4A0.901.88 (1)2.741160
N3—H3A···O4B0.902.10 (1)2.952157
N3—H3B···O2i0.901.992.777 (4)145
N3—H3B···O3i0.902.152.793 (4)128
O4B—H4B···O1ii0.912 (7)2.02 (7)2.793141
O4A—H4A···O2iii0.933 (10)1.90 (9)2.811165
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H3A⋯O4A0.901.88 (1)2.741160
N3—H3A⋯O4B0.902.10 (1)2.952157
N3—H3B⋯O2i0.901.992.777 (4)145
N3—H3B⋯O3i0.902.152.793 (4)128
O4B—H4B⋯O1ii0.912 (7)2.02 (7)2.793141
O4A—H4A⋯O2iii0.933 (10)1.90 (9)2.811165

Symmetry codes: (i) ; (ii) ; (iii) .

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