Literature DB >> 21581900

Hydro-nium (3-oxo-1-phosphono-1,3-dihydro-isobenzofuran-1-yl)phospho-nate.

Carole Barbey, Pascal Retailleau, Erwann Guénin, Nathalie Dupont.   

Abstract

In the title compound, H(3)O(+)·C(8)H(7)O(8)P(2) (-), the anions form inversion dimmers by way of pairs of O-H⋯O hydrogen bonds involving the phospho-nic functions and via the hydro-nium cation. Further O-H⋯O links involving the hydronium cation play a prominant part in the cohesion of the crystal structure by building bridges between bis-phospho-nate pairs, forming infinite ribbons along the b-axis direction and by cross-linking these ribbons perpendicularly along the a-axis direction, forming an infinite three-dimensional hydrogen-bond network. The benzene ring and the C=O atoms of the furan ring are disordered over two sets of positions of equal occupancy.

Entities:  

Year:  2009        PMID: 21581900      PMCID: PMC2968306          DOI: 10.1107/S1600536809000907

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the pharmacological applications of bis­phospho­nates, see Heymann et al. (2004 ▶); Rodan & Martin (2000 ▶); Fournier et al. (2002 ▶); Hamma-Kourbali et al. (2003 ▶); Wood et al. (2002 ▶); Martin et al. (2001 ▶, 2002 ▶); Sanders et al. (2003 ▶). For general background, see Lecouvey et al. (2003a ▶,b ▶); Monteil et al. (2005 ▶); Guénin et al. (2004 ▶); Lecouvey & Leroux (2000 ▶); Vachal et al. (2006 ▶). For related structures, see Sylvestre et al. (2001 ▶); Lecouvey et al. (2002 ▶).

Experimental

Crystal data

H3O+·C8H7O8P2 M = 312.10 Monoclinic, a = 26.2271 (9) Å b = 7.2913 (3) Å c = 15.2621 (6) Å β = 124.103 (2)° V = 2416.66 (16) Å3 Z = 8 Mo Kα radiation μ = 0.40 mm−1 T = 293 (2) K 0.30 × 0.10 × 0.10 mm

Data collection

Nonius KappaCCD diffractometer Absorption correction: none 14205 measured reflections 2139 independent reflections 1627 reflections with I > 2σ(I) R int = 0.071

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.126 S = 1.05 2139 reflections 229 parameters 21 restraints H-atom parameters constrained Δρmax = 0.33 e Å−3 Δρmin = −0.37 e Å−3 Data collection: COLLECT (Hooft, 1998 ▶); cell refinement: HKL (Otwinowski & Minor, 1997 ▶); data reduction: HKL; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and CrystalBuilder (Welter, 2006 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809000907/dn2420sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809000907/dn2420Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
H3O+·C8H7O8P2F(000) = 1280
Mr = 312.10Dx = 1.716 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71069 Å
Hall symbol: -C 2ycCell parameters from 2338 reflections
a = 26.2271 (9) Åθ = 0.4–25.4°
b = 7.2913 (3) ŵ = 0.40 mm1
c = 15.2621 (6) ÅT = 293 K
β = 124.103 (2)°Parallelepipedic, colourless
V = 2416.66 (16) Å30.30 × 0.10 × 0.10 mm
Z = 8
Nonius KappaCCD diffractometer1627 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.071
graphiteθmax = 25.4°, θmin = 3.0°
Detector resolution: 9 pixels mm-1h = −31→30
φ and ω scansk = −8→8
14205 measured reflectionsl = −18→17
2139 independent reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.126H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0625P)2 + 4.0148P] where P = (Fo2 + 2Fc2)/3
2139 reflections(Δ/σ)max = 0.001
229 parametersΔρmax = 0.33 e Å3
21 restraintsΔρmin = −0.37 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
P10.81092 (4)0.03803 (12)0.41201 (6)0.0268 (3)
O110.79680 (10)−0.0117 (3)0.49420 (18)0.0338 (6)
H110.76150.01910.47210.051*
O120.75192 (9)0.0932 (3)0.30772 (17)0.0338 (6)
H120.75280.05410.25820.051*
O130.84830 (10)−0.1086 (3)0.40406 (18)0.0339 (6)
P20.82143 (3)0.45428 (11)0.46825 (6)0.0250 (3)
O230.80619 (9)0.4158 (3)0.54732 (17)0.0316 (5)
O220.76507 (9)0.5004 (3)0.36019 (17)0.0323 (6)
O210.87289 (10)0.5997 (3)0.50941 (18)0.0339 (6)
H210.86050.68560.46760.051*
C10.85893 (13)0.2462 (4)0.4606 (2)0.0252 (7)
O10.90991 (9)0.2067 (3)0.57008 (15)0.0329 (6)
C2A0.9660 (4)0.2436 (17)0.5830 (7)0.030 (3)0.50
O2A1.0134 (4)0.2317 (14)0.6679 (7)0.058 (3)0.50
C3A0.9536 (4)0.2866 (17)0.4802 (7)0.032 (3)0.50
C40.89030 (14)0.2748 (5)0.4041 (2)0.0295 (7)
C50.86705 (16)0.3115 (5)0.2986 (3)0.0373 (8)
H50.82500.30670.24670.045*
C6A0.9093 (5)0.356 (2)0.2737 (11)0.037 (4)0.50
H6A0.89470.38900.20460.045*0.50
C7A0.9732 (6)0.3515 (19)0.3495 (10)0.056 (4)0.50
H7A1.00030.37360.32960.068*0.50
C8A0.9952 (5)0.3150 (15)0.4523 (9)0.050 (3)0.50
H8A1.03740.30920.50320.060*0.50
C2B0.9639 (5)0.1751 (16)0.5743 (9)0.038 (4)0.50
O2B1.0105 (4)0.1345 (12)0.6576 (8)0.053 (2)0.50
C3B0.9517 (4)0.2220 (17)0.4728 (8)0.030 (3)0.50
C6B0.9075 (6)0.297 (3)0.2668 (12)0.045 (5)0.50
H6B0.89220.30940.19550.055*0.50
C7B0.9703 (6)0.264 (2)0.3393 (11)0.062 (5)0.50
H7B0.99710.27230.31770.074*0.50
C8B0.9926 (5)0.2211 (16)0.4419 (10)0.052 (3)0.50
H8B1.03390.19180.48970.062*0.50
O1W0.85750 (13)−0.1636 (4)0.2188 (2)0.0646 (9)
H1W0.8473−0.16390.26900.097*
H2W0.8410−0.25450.16540.097*
H3W0.9009−0.15440.25750.097*
U11U22U33U12U13U23
P10.0238 (4)0.0260 (5)0.0315 (5)0.0011 (3)0.0160 (4)0.0003 (3)
O110.0267 (12)0.0395 (14)0.0395 (13)0.0046 (10)0.0212 (11)0.0068 (11)
O120.0250 (11)0.0408 (14)0.0277 (11)0.0002 (10)0.0099 (10)−0.0051 (10)
O130.0351 (12)0.0286 (13)0.0461 (14)0.0040 (10)0.0277 (12)−0.0010 (10)
P20.0219 (4)0.0269 (5)0.0268 (4)−0.0013 (3)0.0141 (4)0.0004 (3)
O230.0298 (11)0.0380 (13)0.0329 (12)0.0034 (10)0.0211 (11)0.0044 (10)
O220.0224 (11)0.0385 (14)0.0311 (12)0.0041 (10)0.0120 (10)0.0051 (10)
O210.0259 (11)0.0296 (13)0.0391 (13)−0.0050 (10)0.0138 (11)0.0014 (10)
C10.0174 (14)0.0338 (18)0.0203 (14)0.0011 (13)0.0081 (13)0.0012 (12)
O10.0210 (11)0.0494 (15)0.0257 (11)0.0043 (10)0.0116 (10)0.0059 (10)
C2A0.012 (4)0.046 (9)0.026 (5)0.000 (4)0.007 (4)−0.008 (4)
O2A0.022 (4)0.111 (8)0.032 (4)−0.004 (5)0.009 (3)−0.001 (5)
C3A0.024 (4)0.033 (9)0.038 (5)−0.008 (4)0.016 (4)−0.005 (4)
C40.0237 (16)0.0341 (19)0.0338 (16)0.0004 (14)0.0180 (15)0.0002 (14)
C50.0329 (18)0.046 (2)0.0331 (18)0.0081 (16)0.0186 (16)0.0073 (16)
C6A0.046 (6)0.032 (11)0.039 (5)0.008 (5)0.027 (5)0.006 (5)
C7A0.050 (6)0.086 (12)0.057 (6)−0.004 (7)0.045 (6)0.005 (7)
C8A0.032 (5)0.074 (9)0.048 (5)−0.016 (6)0.026 (4)−0.010 (6)
C2B0.033 (6)0.035 (8)0.043 (6)−0.005 (4)0.019 (5)−0.010 (5)
O2B0.020 (3)0.083 (7)0.038 (4)0.008 (4)0.005 (3)−0.002 (5)
C3B0.024 (4)0.028 (8)0.039 (5)−0.006 (4)0.019 (4)−0.009 (4)
C6B0.073 (8)0.036 (12)0.053 (7)0.017 (6)0.051 (7)0.014 (6)
C7B0.050 (7)0.091 (12)0.070 (8)0.011 (7)0.049 (7)0.024 (8)
C8B0.029 (5)0.074 (9)0.061 (6)−0.001 (6)0.030 (5)0.007 (7)
O1W0.0470 (16)0.081 (2)0.0599 (18)0.0001 (16)0.0266 (15)−0.0147 (16)
P1—O131.501 (2)C4—C3B1.395 (9)
P1—O121.526 (2)C5—C6A1.397 (11)
P1—O111.537 (2)C5—C6B1.397 (11)
P1—C11.842 (3)C5—H50.9300
O11—H110.8200C6A—C7A1.405 (11)
O12—H120.8200C6A—H6A0.9300
P2—O231.495 (2)C7A—C8A1.360 (11)
P2—O221.511 (2)C7A—H7A0.9300
P2—O211.546 (2)C8A—H8A0.9300
P2—C11.847 (3)C2B—O2B1.207 (10)
O21—H210.8200C2B—C3B1.437 (11)
C1—O11.469 (3)C3B—C8B1.393 (10)
C1—C41.503 (4)C6B—C7B1.396 (12)
O1—C2A1.397 (9)C6B—H6B0.9300
O1—C2B1.399 (10)C7B—C8B1.366 (11)
C2A—O2A1.193 (9)C7B—H7B0.9300
C2A—C3A1.447 (10)C8B—H8B0.9300
C3A—C8A1.390 (10)O1W—H1W0.9423
C3A—C41.397 (9)O1W—H2W0.9469
C4—C51.391 (4)O1W—H3W0.9450
O13—P1—O12115.47 (13)C3A—C4—C1108.0 (5)
O13—P1—O11111.42 (13)C4—C5—C6A117.4 (6)
O12—P1—O11110.24 (12)C4—C5—C6B117.6 (7)
O13—P1—C1106.83 (13)C6A—C5—C6B18.0 (14)
O12—P1—C1105.50 (13)C4—C5—H5121.3
O11—P1—C1106.80 (13)C6A—C5—H5121.3
P1—O11—H11109.5C6B—C5—H5118.0
P1—O12—H12109.5C5—C6A—C7A122.2 (10)
O23—P2—O22112.47 (12)C5—C6A—H6A118.9
O23—P2—O21111.60 (13)C7A—C6A—H6A118.9
O22—P2—O21112.81 (13)C8A—C7A—C6A119.5 (11)
O23—P2—C1106.84 (13)C8A—C7A—H7A120.3
O22—P2—C1110.08 (13)C6A—C7A—H7A120.3
O21—P2—C1102.39 (13)C7A—C8A—C3A119.0 (10)
P2—O21—H21109.5C7A—C8A—H8A120.5
O1—C1—C4103.8 (2)C3A—C8A—H8A120.5
O1—C1—P1106.1 (2)O2B—C2B—O1119.4 (10)
C4—C1—P1110.7 (2)O2B—C2B—C3B132.5 (10)
O1—C1—P2105.48 (18)O1—C2B—C3B107.6 (8)
C4—C1—P2113.9 (2)C8B—C3B—C4122.0 (8)
P1—C1—P2115.74 (15)C8B—C3B—C2B128.0 (9)
C2A—O1—C2B21.1 (7)C4—C3B—C2B110.0 (7)
C2A—O1—C1109.7 (4)C7B—C6B—C5121.7 (11)
C2B—O1—C1109.7 (5)C7B—C6B—H6B119.2
O2A—C2A—O1120.8 (9)C5—C6B—H6B119.2
O2A—C2A—C3A131.1 (9)C8B—C7B—C6B120.3 (11)
O1—C2A—C3A108.1 (7)C8B—C7B—H7B119.9
C8A—C3A—C4121.7 (8)C6B—C7B—H7B119.9
C8A—C3A—C2A128.8 (9)C7B—C8B—C3B118.1 (10)
C4—C3A—C2A109.1 (7)C7B—C8B—H8B120.9
C5—C4—C3B119.7 (5)C3B—C8B—H8B120.9
C5—C4—C3A119.7 (5)H1W—O1W—H2W119.8
C3B—C4—C3A19.8 (8)H1W—O1W—H3W106.4
C5—C4—C1131.7 (3)H2W—O1W—H3W113.4
C3B—C4—C1107.6 (5)
D—H···AD—HH···AD···AD—H···A
O11—H11···O23i0.821.692.504 (3)168
O12—H12···O22ii0.821.642.438 (3)164
O21—H21···O13iii0.821.722.522 (3)167
O1W—H1W···O130.942.092.996 (4)162
O1W—H2W···O23iv0.951.902.845 (4)174
O1W—H3W···O2Bv0.941.932.875 (10)177
O1W—H3W···O2Av0.941.952.853 (9)159
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O11—H11⋯O23i0.821.692.504 (3)168
O12—H12⋯O22ii0.821.642.438 (3)164
O21—H21⋯O13iii0.821.722.522 (3)167
O1W—H1W⋯O130.942.092.996 (4)162
O1W—H2W⋯O23iv0.951.902.845 (4)174
O1W—H3W⋯O2Bv0.941.932.875 (10)177
O1W—H3W⋯O2Av0.941.952.853 (9)159

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

  11 in total

Review 1.  Therapeutic approaches to bone diseases.

Authors:  G A Rodan; T J Martin
Journal:  Science       Date:  2000-09-01       Impact factor: 47.728

2.  Synthesis and study of alendronate derivatives as potential prodrugs of alendronate sodium for the treatment of low bone density and osteoporosis.

Authors:  Petr Vachal; Jeffrey J Hale; Zhe Lu; Eric C Streckfuss; Sander G Mills; Malcolm MacCoss; Daniel H Yin; Kimberly Algayer; Kimberly Manser; Filippos Kesisoglou; Soumojeet Ghosh; Laman L Alani
Journal:  J Med Chem       Date:  2006-06-01       Impact factor: 7.446

3.  Bisphosphonates inhibit the growth of Trypanosoma brucei, Trypanosoma cruzi, Leishmania donovani, Toxoplasma gondii, and Plasmodium falciparum: a potential route to chemotherapy.

Authors:  M B Martin; J S Grimley; J C Lewis; H T Heath; B N Bailey; H Kendrick; V Yardley; A Caldera; R Lira; J A Urbina; S N Moreno; R Docampo; S L Croft; E Oldfield
Journal:  J Med Chem       Date:  2001-03-15       Impact factor: 7.446

4.  Bisphosphonates inhibit angiogenesis in vitro and testosterone-stimulated vascular regrowth in the ventral prostate in castrated rats.

Authors:  Pierrick Fournier; Sandrine Boissier; Stéphanie Filleur; Julien Guglielmi; Florence Cabon; Marc Colombel; Philippe Clézardin
Journal:  Cancer Res       Date:  2002-11-15       Impact factor: 12.701

5.  A novel non-containing-nitrogen bisphosphonate inhibits both in vitro and in vivo angiogenesis.

Authors:  Yamina Hamma-Kourbali; Mélanie Di Benedetto; Dominique Ledoux; Olivier Oudar; Yves Leroux; Marc Lecouvey; Michel Kraemer
Journal:  Biochem Biophys Res Commun       Date:  2003-10-24       Impact factor: 3.575

Review 6.  Bisphosphonates: new therapeutic agents for the treatment of bone tumors.

Authors:  Dominique Heymann; Benjamin Ory; François Gouin; Jonathan R Green; Françoise Rédini
Journal:  Trends Mol Med       Date:  2004-07       Impact factor: 11.951

7.  Activity of bisphosphonates against Trypanosoma brucei rhodesiense.

Authors:  Michael B Martin; John M Sanders; Howard Kendrick; Kate de Luca-Fradley; Jared C Lewis; Joshua S Grimley; Erin M Van Brussel; Jeffrey R Olsen; Gary A Meints; Agnieszka Burzynska; Pawel Kafarski; Simon L Croft; Eric Oldfield
Journal:  J Med Chem       Date:  2002-07-04       Impact factor: 7.446

8.  Novel antiangiogenic effects of the bisphosphonate compound zoledronic acid.

Authors:  Jeanette Wood; Karine Bonjean; Stephan Ruetz; Akeila Bellahcène; Laetitia Devy; Jean Michel Foidart; Vincent Castronovo; Jonathan R Green
Journal:  J Pharmacol Exp Ther       Date:  2002-09       Impact factor: 4.030

9.  3-D QSAR investigations of the inhibition of Leishmania major farnesyl pyrophosphate synthase by bisphosphonates.

Authors:  John M Sanders; Aurora Ortiz Gómez; Junhong Mao; Gary A Meints; Erin M Van Brussel; Agnieszka Burzynska; Pawel Kafarski; Dolores González-Pacanowska; Eric Oldfield
Journal:  J Med Chem       Date:  2003-11-20       Impact factor: 7.446

10.  [Hydroxy(aryl)methylene]diphosphonic acids, a class of drugs in bone pathology treatments, crystallize as head-to-head dimers.

Authors:  Marc Lecouvey; Carole Barbey; Alda Navaza; Alain Neuman; Thierry Prangé
Journal:  Acta Crystallogr C       Date:  2002-07-31       Impact factor: 1.172

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