Literature DB >> 21581884

(S)-Benzyl 2-amino-3-(4-hydroxy-phen-yl)propanoate.

Shu-Na Luo1, Lu Chen, Yu-Xing Gao, Peng-Xiang Xu, Yu-Fen Zhao.   

Abstract

The title compound, C(16)H(17)NO(3), adopts a folded conformation in the crystal structure. The crystal packing is stabilized by inter-molecular O-H⋯O and N-H⋯O hydrogen-bonding inter-actions. The absolute configuration was assigned assuming that the absolute configuration of the starting material l-tyrosine was retained during the synthesis.

Entities:  

Year:  2009        PMID: 21581884      PMCID: PMC2968268          DOI: 10.1107/S1600536808044218

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background, see: Nakamura et al. (1998 ▶). For the n-butyl analogue, see: Qian et al. (2006 ▶).

Experimental

Crystal data

C16H17NO3 M = 271.31 Orthorhombic, a = 5.1589 (2) Å b = 15.1430 (4) Å c = 18.6367 (6) Å V = 1455.92 (8) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 293 (2) K 0.25 × 0.22 × 0.18 mm

Data collection

Bruker SMART APEX area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.979, T max = 0.985 8138 measured reflections 1672 independent reflections 1172 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.032 wR(F 2) = 0.076 S = 0.93 1672 reflections 193 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.08 e Å−3 Δρmin = −0.10 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808044218/wk2093sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808044218/wk2093Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H17NO3F(000) = 576
Mr = 271.31Dx = 1.238 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 2651 reflections
a = 5.1589 (2) Åθ = 2.7–32.7°
b = 15.1430 (4) ŵ = 0.09 mm1
c = 18.6367 (6) ÅT = 293 K
V = 1455.92 (8) Å3Plate, colorless
Z = 40.25 × 0.22 × 0.18 mm
Bruker APEX area-detector diffractometer1672 independent reflections
Radiation source: fine-focus sealed tube1172 reflections with I > 2σ(I)
graphiteRint = 0.031
φ and ω scansθmax = 26.0°, θmin = 2.7°
Absorption correction: multi-scan (SADABS; Bruker, 2001)h = −5→6
Tmin = 0.979, Tmax = 0.985k = −18→16
8138 measured reflectionsl = −22→22
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.032Hydrogen site location: geom CH, N and OH from difmap
wR(F2) = 0.076H atoms treated by a mixture of independent and constrained refinement
S = 0.93w = 1/[σ2(Fo2) + (0.0454P)2] where P = (Fo2 + 2Fc2)/3
1672 reflections(Δ/σ)max < 0.001
193 parametersΔρmax = 0.08 e Å3
0 restraintsΔρmin = −0.10 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.4947 (3)0.30756 (10)0.45476 (9)0.0650 (5)
O20.8528 (3)0.38687 (8)0.43244 (8)0.0538 (4)
O30.7826 (4)0.60066 (9)0.17256 (9)0.0648 (5)
N10.7847 (5)0.15910 (11)0.39585 (11)0.0499 (5)
C10.7006 (4)0.31643 (12)0.42536 (11)0.0451 (5)
C20.8176 (4)0.25132 (12)0.37341 (10)0.0441 (5)
H2A1.00320.26380.36880.053*
C30.6894 (5)0.26200 (12)0.29951 (11)0.0564 (6)
H3B0.76420.21880.26720.068*
H3C0.50650.24840.30420.068*
C40.7151 (5)0.35192 (13)0.26566 (11)0.0491 (5)
C50.9175 (5)0.37134 (14)0.21981 (12)0.0598 (6)
H5A1.03920.32780.20960.072*
C60.9440 (5)0.45339 (13)0.18877 (12)0.0558 (6)
H6A1.08220.46440.15800.067*
C70.7680 (4)0.51880 (12)0.20290 (11)0.0470 (5)
C80.5653 (5)0.50079 (14)0.24802 (13)0.0591 (6)
H8A0.44310.54430.25780.071*
C90.5413 (5)0.41866 (15)0.27908 (12)0.0593 (6)
H9A0.40340.40810.31000.071*
C100.7522 (5)0.45997 (13)0.47444 (13)0.0634 (6)
H10A0.73220.44260.52420.076*
H10B0.58450.47820.45620.076*
C110.9434 (5)0.53384 (13)0.46821 (13)0.0531 (6)
C121.0032 (7)0.56917 (19)0.40256 (15)0.0943 (10)
H12A0.92540.54690.36130.113*
C131.1791 (9)0.6379 (2)0.39742 (18)0.1095 (12)
H13A1.21660.66210.35270.131*
C141.2967 (7)0.67010 (17)0.4564 (2)0.0909 (9)
H14A1.41550.71610.45260.109*
C151.2409 (7)0.63529 (17)0.52081 (19)0.0889 (9)
H15A1.32180.65730.56170.107*
C161.0650 (6)0.56733 (15)0.52689 (14)0.0687 (7)
H16A1.02870.54390.57190.082*
H1A0.816 (5)0.1545 (14)0.4419 (14)0.060 (7)*
H1B0.613 (7)0.1410 (17)0.3878 (16)0.091 (9)*
H30.941 (6)0.6089 (16)0.1494 (15)0.094 (10)*
U11U22U33U12U13U23
O10.0604 (10)0.0618 (9)0.0728 (11)−0.0057 (8)0.0199 (9)−0.0112 (8)
O20.0563 (8)0.0399 (7)0.0652 (9)−0.0023 (7)0.0044 (8)−0.0138 (7)
O30.0676 (11)0.0502 (8)0.0766 (11)0.0065 (8)0.0092 (10)0.0187 (8)
N10.0652 (13)0.0378 (9)0.0467 (11)−0.0001 (9)−0.0009 (11)0.0004 (8)
C10.0508 (12)0.0408 (11)0.0437 (11)0.0019 (10)−0.0031 (12)−0.0007 (9)
C20.0483 (11)0.0380 (10)0.0460 (11)−0.0029 (9)0.0014 (11)−0.0021 (9)
C30.0777 (15)0.0465 (11)0.0451 (11)−0.0146 (11)−0.0028 (13)0.0018 (10)
C40.0586 (13)0.0472 (11)0.0415 (10)−0.0079 (11)−0.0026 (12)−0.0003 (10)
C50.0699 (15)0.0461 (12)0.0635 (14)0.0064 (12)0.0128 (13)0.0032 (11)
C60.0559 (13)0.0546 (12)0.0570 (14)0.0007 (12)0.0147 (12)0.0098 (12)
C70.0496 (12)0.0444 (11)0.0471 (11)−0.0031 (10)−0.0049 (12)0.0088 (10)
C80.0538 (14)0.0585 (13)0.0649 (14)0.0130 (12)0.0075 (14)0.0120 (12)
C90.0514 (13)0.0703 (15)0.0563 (14)−0.0020 (12)0.0105 (12)0.0134 (12)
C100.0730 (16)0.0474 (11)0.0698 (13)0.0002 (13)0.0112 (15)−0.0183 (11)
C110.0631 (14)0.0418 (11)0.0544 (13)0.0020 (11)0.0010 (13)−0.0077 (10)
C120.138 (3)0.0831 (18)0.0616 (17)−0.036 (2)−0.002 (2)−0.0094 (15)
C130.163 (4)0.088 (2)0.0770 (19)−0.036 (2)0.021 (2)0.0098 (18)
C140.106 (2)0.0549 (14)0.111 (2)−0.0181 (16)0.009 (2)−0.0092 (17)
C150.104 (2)0.0669 (16)0.096 (2)−0.0152 (18)−0.025 (2)−0.0109 (17)
C160.0863 (18)0.0553 (14)0.0645 (15)−0.0028 (14)−0.0128 (16)−0.0006 (13)
O1—C11.203 (2)C6—H6A0.9300
O2—C11.331 (2)C7—C81.369 (3)
O2—C101.452 (2)C8—C91.377 (3)
O3—C71.365 (2)C8—H8A0.9300
O3—H30.93 (3)C9—H9A0.9300
N1—C21.467 (3)C10—C111.496 (3)
N1—H1A0.88 (2)C10—H10A0.9700
N1—H1B0.94 (3)C10—H10B0.9700
C1—C21.508 (3)C11—C161.359 (3)
C2—C31.536 (3)C11—C121.371 (4)
C2—H2A0.9800C12—C131.384 (5)
C3—C41.506 (3)C12—H12A0.9300
C3—H3B0.9700C13—C141.348 (5)
C3—H3C0.9700C13—H13A0.9300
C4—C91.374 (3)C14—C151.341 (4)
C4—C51.381 (3)C14—H14A0.9300
C5—C61.377 (3)C15—C161.377 (4)
C5—H5A0.9300C15—H15A0.9300
C6—C71.369 (3)C16—H16A0.9300
C1—O2—C10116.97 (16)C8—C7—C6118.71 (18)
C7—O3—H3111.3 (16)C7—C8—C9120.4 (2)
C2—N1—H1A109.5 (15)C7—C8—H8A119.8
C2—N1—H1B109.9 (16)C9—C8—H8A119.8
H1A—N1—H1B108 (3)C4—C9—C8121.9 (2)
O1—C1—O2124.43 (19)C4—C9—H9A119.0
O1—C1—C2124.95 (19)C8—C9—H9A119.0
O2—C1—C2110.58 (18)O2—C10—C11107.02 (19)
N1—C2—C1113.15 (16)O2—C10—H10A110.3
N1—C2—C3107.82 (16)C11—C10—H10A110.3
C1—C2—C3109.55 (17)O2—C10—H10B110.3
N1—C2—H2A108.7C11—C10—H10B110.3
C1—C2—H2A108.7H10A—C10—H10B108.6
C3—C2—H2A108.7C16—C11—C12118.0 (2)
C4—C3—C2115.65 (16)C16—C11—C10121.4 (2)
C4—C3—H3B108.4C12—C11—C10120.6 (2)
C2—C3—H3B108.4C11—C12—C13120.2 (3)
C4—C3—H3C108.4C11—C12—H12A119.9
C2—C3—H3C108.4C13—C12—H12A119.9
H3B—C3—H3C107.4C14—C13—C12120.7 (3)
C9—C4—C5116.71 (19)C14—C13—H13A119.6
C9—C4—C3122.1 (2)C12—C13—H13A119.6
C5—C4—C3121.2 (2)C15—C14—C13119.4 (3)
C6—C5—C4121.8 (2)C15—C14—H14A120.3
C6—C5—H5A119.1C13—C14—H14A120.3
C4—C5—H5A119.1C14—C15—C16120.6 (3)
C7—C6—C5120.4 (2)C14—C15—H15A119.7
C7—C6—H6A119.8C16—C15—H15A119.7
C5—C6—H6A119.8C11—C16—C15121.1 (3)
O3—C7—C8118.5 (2)C11—C16—H16A119.4
O3—C7—C6122.7 (2)C15—C16—H16A119.4
C10—O2—C1—O1−4.7 (3)C6—C7—C8—C90.7 (3)
C10—O2—C1—C2173.19 (16)C5—C4—C9—C80.6 (3)
O1—C1—C2—N1−41.7 (3)C3—C4—C9—C8−180.0 (2)
O2—C1—C2—N1140.49 (19)C7—C8—C9—C4−0.8 (4)
O1—C1—C2—C378.7 (2)C1—O2—C10—C11−174.17 (19)
O2—C1—C2—C3−99.2 (2)O2—C10—C11—C16−119.4 (2)
N1—C2—C3—C4−177.03 (19)O2—C10—C11—C1259.8 (3)
C1—C2—C3—C459.4 (3)C16—C11—C12—C13−1.1 (4)
C2—C3—C4—C9−87.4 (3)C10—C11—C12—C13179.6 (3)
C2—C3—C4—C592.1 (2)C11—C12—C13—C141.0 (6)
C9—C4—C5—C6−0.2 (3)C12—C13—C14—C15−0.3 (6)
C3—C4—C5—C6−179.7 (2)C13—C14—C15—C16−0.1 (5)
C4—C5—C6—C70.1 (4)C12—C11—C16—C150.7 (4)
C5—C6—C7—O3−178.8 (2)C10—C11—C16—C15179.9 (2)
C5—C6—C7—C8−0.3 (3)C14—C15—C16—C11−0.1 (4)
O3—C7—C8—C9179.2 (2)
D—H···AD—HH···AD···AD—H···A
O3—H3···N1i0.93 (3)1.82 (3)2.718 (3)163 (2)
N1—H1A···O1ii0.88 (2)2.21 (3)3.030 (3)156 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3⋯N1i0.93 (3)1.82 (3)2.718 (3)163 (2)
N1—H1A⋯O1ii0.88 (2)2.21 (3)3.030 (3)156 (2)

Symmetry codes: (i) ; (ii) .

  2 in total

1.  A Concise Synthesis of Enantiomerically Pure L-(4-Boronophenyl)alanine from L-Tyrosine.

Authors:  Hiroyuki Nakamura; Masaru Fujiwara; Yoshinori Yamamoto
Journal:  J Org Chem       Date:  1998-10-16       Impact factor: 4.354

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  2 in total
  1 in total

1.  (S)-Benzyl 3-(4-hy-droxy-phen-yl)-2-(trityl-amino)-propano-ate.

Authors:  Meimei Chen; Xinmei Lai; Changen Zhou; Xuemei Yang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-05-14
  1 in total

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