Literature DB >> 21581872

tert-Butyl 3-[N-(tert-butoxy-carbonyl)methyl-amino]-4-methoxy-imino-3-methyl-piperidine-1-carboxyl-ate.

Zhilong Wan1, Yun Chai, Mingliang Liu, Huiyuan Guo.   

Abstract

The title compound, C(18)H(33)N(3)O(5), was prepared from N-tert-butoxy-carbonyl-4-piperidone using a nine-step reaction, including condensation, methyl-ation, oximation, hydrolysis, esterification, ammonolysis, Hoffmann degradation, tert-butoxy-carbonyl protection and methyl-ation. The E configuration of the methyl-oxime geometry of the compound is confirmed.

Entities:  

Year:  2009        PMID: 21581872      PMCID: PMC2968324          DOI: 10.1107/S1600536808044255

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis and properties of quinolone derivatives, see: Anderson & Osheroff (2001 ▶); Ball et al. (1998 ▶); Hong et al. (1997 ▶); Ray et al. (2005 ▶); Wang et al. (2008 ▶).

Experimental

Crystal data

C18H33N3O5 M = 371.47 Monoclinic, a = 28.867 (3) Å b = 6.1887 (13) Å c = 25.379 (3) Å β = 112.769 (2)° V = 4180.6 (11) Å3 Z = 8 Mo Kα radiation μ = 0.09 mm−1 T = 298 (2) K 0.40 × 0.20 × 0.11 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.963, T max = 0.991 10032 measured reflections 3699 independent reflections 1915 reflections with I > 2σ(I) R int = 0.060

Refinement

R[F 2 > 2σ(F 2)] = 0.050 wR(F 2) = 0.144 S = 1.02 3699 reflections 244 parameters H-atom parameters constrained Δρmax = 0.23 e Å−3 Δρmin = −0.22 e Å−3 Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT (Bruker, 1999 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808044255/rk2125sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808044255/rk2125Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H33N3O5F(000) = 1616
Mr = 371.47Dx = 1.180 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 1707 reflections
a = 28.867 (3) Åθ = 2.7–21.1°
b = 6.1887 (13) ŵ = 0.09 mm1
c = 25.379 (3) ÅT = 298 K
β = 112.769 (2)°Prism, colourless
V = 4180.6 (11) Å30.40 × 0.20 × 0.11 mm
Z = 8
Bruker SMART CCD area-detector diffractometer3699 independent reflections
Radiation source: Fine–focus sealed tube1915 reflections with I > 2σ(I)
GraphiteRint = 0.060
φ and ω scansθmax = 25.0°, θmin = 1.5°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −33→34
Tmin = 0.963, Tmax = 0.991k = −7→6
10032 measured reflectionsl = −30→23
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.050Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.144H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.058P)2 + 0.3657P] where P = (Fo2 + 2Fc2)/3
3699 reflections(Δ/σ)max = 0.001
244 parametersΔρmax = 0.23 e Å3
0 restraintsΔρmin = −0.22 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R–factor wR and goodness of fit S are based on F2, conventional R–factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R–factors(gt) etc. and is not relevant to the choice of reflections for refinement. R–factors based on F2 are statistically about twice as large as those based on F, and R–factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.18007 (8)0.2543 (3)0.60235 (9)0.0389 (6)
N20.07900 (7)0.1687 (4)0.51326 (9)0.0367 (6)
N30.16321 (7)−0.1321 (4)0.47432 (9)0.0382 (6)
O10.16324 (7)0.3113 (3)0.67977 (7)0.0496 (5)
O20.21149 (7)0.5507 (3)0.65653 (8)0.0554 (6)
O30.07112 (6)0.1423 (3)0.42229 (7)0.0525 (6)
O40.01093 (7)0.3134 (3)0.44214 (8)0.0607 (6)
O50.19807 (6)−0.0836 (3)0.44880 (7)0.0452 (5)
C10.15544 (9)0.0442 (4)0.59370 (10)0.0374 (7)
H1A0.13610.03440.61750.045*
H1B0.1809−0.06810.60570.045*
C20.12010 (9)0.0043 (4)0.53070 (10)0.0335 (6)
C30.15423 (9)0.0354 (4)0.49846 (10)0.0325 (6)
C40.17891 (10)0.2510 (4)0.50509 (11)0.0387 (7)
H4A0.15360.36250.48990.046*
H4B0.20060.25420.48390.046*
C50.20975 (10)0.2938 (5)0.56825 (11)0.0459 (8)
H5A0.23900.20050.58130.055*
H5B0.22130.44250.57320.055*
C60.18713 (10)0.3856 (5)0.64739 (11)0.0399 (7)
C70.15940 (11)0.4430 (5)0.72637 (12)0.0495 (8)
C80.21026 (13)0.4764 (6)0.77309 (13)0.0738 (11)
H8A0.22610.33880.78560.111*
H8B0.20660.54940.80460.111*
H8C0.23060.56230.75890.111*
C90.13357 (14)0.6544 (6)0.70277 (15)0.0871 (13)
H9A0.15610.74610.69340.131*
H9B0.12410.72410.73090.131*
H9C0.10410.62720.66900.131*
C100.12728 (14)0.3024 (6)0.74676 (14)0.0903 (13)
H10A0.09570.27620.71580.135*
H10B0.12160.37380.77730.135*
H10C0.14410.16740.76030.135*
C110.09808 (10)−0.2224 (4)0.52538 (12)0.0432 (7)
H11A0.0769−0.23060.54660.065*
H11B0.1248−0.32560.54030.065*
H11C0.0786−0.25370.48590.065*
C120.05026 (10)0.2153 (5)0.45784 (12)0.0417 (7)
C130.05602 (10)0.2229 (5)0.55381 (11)0.0492 (8)
H13A0.02950.32570.53670.074*
H13B0.08100.28410.58770.074*
H13C0.04250.09440.56360.074*
C140.04913 (11)0.1885 (6)0.36115 (12)0.0584 (9)
C150.04440 (16)0.4286 (7)0.35091 (17)0.1048 (14)
H15A0.01850.48440.36200.157*
H15B0.03600.45730.31110.157*
H15C0.07570.49720.37310.157*
C170.08735 (13)0.0915 (7)0.34093 (13)0.0907 (13)
H17A0.11980.15300.36220.136*
H17B0.07790.12170.30100.136*
H17C0.0887−0.06210.34670.136*
C16−0.00059 (12)0.0715 (7)0.33491 (14)0.0906 (13)
H16A0.0039−0.07780.34600.136*
H16B−0.01290.08220.29400.136*
H16C−0.02440.13600.34810.136*
C180.20473 (11)−0.2741 (5)0.42114 (13)0.0557 (9)
H18A0.2217−0.38150.44930.083*
H18B0.2245−0.24110.39920.083*
H18C0.1725−0.32830.39620.083*
U11U22U33U12U13U23
N10.0452 (13)0.0367 (15)0.0395 (13)−0.0085 (11)0.0215 (11)−0.0060 (12)
N20.0359 (12)0.0426 (15)0.0368 (13)0.0076 (11)0.0198 (11)0.0002 (11)
N30.0368 (12)0.0427 (15)0.0420 (13)0.0011 (11)0.0226 (11)−0.0024 (12)
O10.0665 (13)0.0501 (13)0.0394 (11)−0.0098 (11)0.0284 (10)−0.0081 (10)
O20.0687 (14)0.0486 (14)0.0528 (13)−0.0193 (12)0.0277 (11)−0.0143 (11)
O30.0471 (11)0.0771 (16)0.0335 (11)0.0188 (11)0.0157 (9)0.0062 (11)
O40.0469 (12)0.0716 (16)0.0619 (14)0.0252 (12)0.0193 (10)0.0080 (12)
O50.0509 (11)0.0453 (13)0.0538 (12)−0.0003 (10)0.0360 (10)−0.0070 (10)
C10.0438 (16)0.0357 (18)0.0371 (16)−0.0012 (14)0.0203 (13)−0.0006 (13)
C20.0361 (15)0.0331 (17)0.0349 (15)0.0017 (13)0.0178 (12)0.0011 (13)
C30.0314 (14)0.0359 (17)0.0331 (15)0.0034 (13)0.0155 (12)0.0006 (13)
C40.0451 (16)0.0350 (17)0.0442 (17)−0.0010 (14)0.0264 (13)−0.0012 (14)
C50.0468 (17)0.0457 (19)0.0510 (18)−0.0088 (15)0.0254 (15)−0.0077 (15)
C60.0454 (17)0.0398 (19)0.0361 (16)0.0002 (15)0.0174 (14)−0.0027 (15)
C70.066 (2)0.050 (2)0.0392 (17)0.0003 (17)0.0280 (16)−0.0052 (16)
C80.090 (3)0.084 (3)0.0401 (18)0.001 (2)0.0172 (19)−0.0105 (19)
C90.110 (3)0.089 (3)0.074 (3)0.044 (3)0.049 (2)0.007 (2)
C100.127 (3)0.099 (3)0.071 (2)−0.034 (3)0.066 (2)−0.023 (2)
C110.0486 (16)0.0375 (18)0.0494 (17)−0.0058 (14)0.0252 (14)−0.0037 (15)
C120.0406 (17)0.0440 (19)0.0439 (18)0.0051 (15)0.0201 (14)0.0005 (15)
C130.0461 (17)0.058 (2)0.0512 (18)0.0062 (15)0.0276 (15)−0.0066 (16)
C140.054 (2)0.082 (3)0.0373 (17)0.0154 (19)0.0156 (15)0.0125 (18)
C150.120 (3)0.109 (4)0.092 (3)0.012 (3)0.048 (3)0.044 (3)
C170.079 (2)0.151 (4)0.046 (2)0.030 (3)0.0297 (19)0.010 (2)
C160.072 (3)0.130 (4)0.057 (2)0.002 (3)0.0116 (19)−0.011 (2)
C180.065 (2)0.052 (2)0.065 (2)−0.0031 (17)0.0409 (17)−0.0190 (17)
N1—C61.352 (3)C8—H8B0.9600
N1—C51.455 (3)C8—H8C0.9600
N1—C11.457 (3)C9—H9A0.9600
N2—C121.359 (3)C9—H9B0.9600
N2—C131.463 (3)C9—H9C0.9600
N2—C21.494 (3)C10—H10A0.9600
N3—C31.280 (3)C10—H10B0.9600
N3—O51.423 (2)C10—H10C0.9600
O1—C61.342 (3)C11—H11A0.9600
O1—C71.476 (3)C11—H11B0.9600
O2—C61.210 (3)C11—H11C0.9600
O3—C121.342 (3)C13—H13A0.9600
O3—C141.459 (3)C13—H13B0.9600
O4—C121.211 (3)C13—H13C0.9600
O5—C181.423 (3)C14—C151.505 (5)
C1—C21.548 (3)C14—C171.510 (4)
C1—H1A0.9700C14—C161.513 (4)
C1—H1B0.9700C15—H15A0.9600
C2—C31.517 (3)C15—H15B0.9600
C2—C111.525 (3)C15—H15C0.9600
C3—C41.491 (3)C17—H17A0.9600
C4—C51.525 (3)C17—H17B0.9600
C4—H4A0.9700C17—H17C0.9600
C4—H4B0.9700C16—H16A0.9600
C5—H5A0.9700C16—H16B0.9600
C5—H5B0.9700C16—H16C0.9600
C7—C81.502 (4)C18—H18A0.9600
C7—C101.502 (4)C18—H18B0.9600
C7—C91.510 (4)C18—H18C0.9600
C8—H8A0.9600
C6—N1—C5118.1 (2)C7—C9—H9C109.5
C6—N1—C1124.7 (2)H9A—C9—H9C109.5
C5—N1—C1115.2 (2)H9B—C9—H9C109.5
C12—N2—C13114.7 (2)C7—C10—H10A109.5
C12—N2—C2123.2 (2)C7—C10—H10B109.5
C13—N2—C2118.2 (2)H10A—C10—H10B109.5
C3—N3—O5110.9 (2)C7—C10—H10C109.5
C6—O1—C7121.1 (2)H10A—C10—H10C109.5
C12—O3—C14121.7 (2)H10B—C10—H10C109.5
C18—O5—N3107.7 (2)C2—C11—H11A109.5
N1—C1—C2112.7 (2)C2—C11—H11B109.5
N1—C1—H1A109.1H11A—C11—H11B109.5
C2—C1—H1A109.1C2—C11—H11C109.5
N1—C1—H1B109.1H11A—C11—H11C109.5
C2—C1—H1B109.1H11B—C11—H11C109.5
H1A—C1—H1B107.8O4—C12—O3123.7 (3)
N2—C2—C3111.2 (2)O4—C12—N2124.5 (3)
N2—C2—C11110.1 (2)O3—C12—N2111.8 (2)
C3—C2—C11113.9 (2)N2—C13—H13A109.5
N2—C2—C1109.1 (2)N2—C13—H13B109.5
C3—C2—C1103.36 (19)H13A—C13—H13B109.5
C11—C2—C1108.9 (2)N2—C13—H13C109.5
N3—C3—C4127.0 (2)H13A—C13—H13C109.5
N3—C3—C2116.7 (2)H13B—C13—H13C109.5
C4—C3—C2115.7 (2)O3—C14—C15110.5 (3)
C3—C4—C5109.4 (2)O3—C14—C17102.1 (2)
C3—C4—H4A109.8C15—C14—C17111.3 (3)
C5—C4—H4A109.8O3—C14—C16108.8 (3)
C3—C4—H4B109.8C15—C14—C16112.9 (3)
C5—C4—H4B109.8C17—C14—C16110.7 (3)
H4A—C4—H4B108.2C14—C15—H15A109.5
N1—C5—C4110.9 (2)C14—C15—H15B109.5
N1—C5—H5A109.5H15A—C15—H15B109.5
C4—C5—H5A109.5C14—C15—H15C109.5
N1—C5—H5B109.5H15A—C15—H15C109.5
C4—C5—H5B109.5H15B—C15—H15C109.5
H5A—C5—H5B108.0C14—C17—H17A109.5
O2—C6—O1124.7 (3)C14—C17—H17B109.5
O2—C6—N1123.8 (3)H17A—C17—H17B109.5
O1—C6—N1111.5 (3)C14—C17—H17C109.5
O1—C7—C8110.8 (2)H17A—C17—H17C109.5
O1—C7—C10101.8 (2)H17B—C17—H17C109.5
C8—C7—C10110.7 (3)C14—C16—H16A109.5
O1—C7—C9109.8 (2)C14—C16—H16B109.5
C8—C7—C9112.1 (3)H16A—C16—H16B109.5
C10—C7—C9111.3 (3)C14—C16—H16C109.5
C7—C8—H8A109.5H16A—C16—H16C109.5
C7—C8—H8B109.5H16B—C16—H16C109.5
H8A—C8—H8B109.5O5—C18—H18A109.5
C7—C8—H8C109.5O5—C18—H18B109.5
H8A—C8—H8C109.5H18A—C18—H18B109.5
H8B—C8—H8C109.5O5—C18—H18C109.5
C7—C9—H9A109.5H18A—C18—H18C109.5
C7—C9—H9B109.5H18B—C18—H18C109.5
H9A—C9—H9B109.5
C3—N3—O5—C18−177.9 (2)C6—N1—C5—C4−143.2 (2)
C6—N1—C1—C2139.0 (2)C1—N1—C5—C452.3 (3)
C5—N1—C1—C2−57.6 (3)C3—C4—C5—N1−49.9 (3)
C12—N2—C2—C348.3 (3)C7—O1—C6—O28.0 (4)
C13—N2—C2—C3−155.2 (2)C7—O1—C6—N1−171.1 (2)
C12—N2—C2—C11−78.9 (3)C5—N1—C6—O210.3 (4)
C13—N2—C2—C1177.7 (3)C1—N1—C6—O2173.3 (3)
C12—N2—C2—C1161.6 (2)C5—N1—C6—O1−170.6 (2)
C13—N2—C2—C1−41.8 (3)C1—N1—C6—O1−7.6 (4)
N1—C1—C2—N2−62.4 (3)C6—O1—C7—C8−66.1 (3)
N1—C1—C2—C356.0 (3)C6—O1—C7—C10176.2 (3)
N1—C1—C2—C11177.4 (2)C6—O1—C7—C958.3 (3)
O5—N3—C3—C4−5.2 (3)C14—O3—C12—O44.0 (4)
O5—N3—C3—C2−176.31 (19)C14—O3—C12—N2−175.0 (2)
N2—C2—C3—N3−129.7 (2)C13—N2—C12—O47.3 (4)
C11—C2—C3—N3−4.6 (3)C2—N2—C12—O4164.6 (3)
C1—C2—C3—N3113.4 (2)C13—N2—C12—O3−173.7 (2)
N2—C2—C3—C458.2 (3)C2—N2—C12—O3−16.5 (4)
C11—C2—C3—C4−176.7 (2)C12—O3—C14—C1557.0 (4)
C1—C2—C3—C4−58.8 (3)C12—O3—C14—C17175.5 (3)
N3—C3—C4—C5−113.4 (3)C12—O3—C14—C16−67.5 (4)
C2—C3—C4—C557.8 (3)
  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Therapeutic advances of new fluoroquinolones.

Authors:  P Ball; A Fernald; G Tillotson
Journal:  Expert Opin Investig Drugs       Date:  1998-05       Impact factor: 6.206

Review 3.  Type II topoisomerases as targets for quinolone antibacterials: turning Dr. Jekyll into Mr. Hyde.

Authors:  V E Anderson; N Osheroff
Journal:  Curr Pharm Des       Date:  2001-03       Impact factor: 3.116

4.  Novel fluoroquinolone antibacterial agents containing oxime-substituted (aminomethyl)pyrrolidines: synthesis and antibacterial activity of 7-(4-(aminomethyl)-3-(methoxyimino)pyrrolidin-1-yl)-1-cyclopropyl-6- fluoro-4-oxo-1,4-dihydro[1,8]naphthyridine-3-carboxylic acid (LB20304).

Authors:  C Y Hong; Y K Kim; J H Chang; S H Kim; H Choi; D H Nam; Y Z Kim; J H Kwak
Journal:  J Med Chem       Date:  1997-10-24       Impact factor: 7.446

5.  [Synthesis and antibacterial activity of 7-(3-amino-4-alkoxyimino-1 -piperidyl) -quinolones].

Authors:  Xiu-Yun Wang; Qiang Guo; Yu-Cheng Wang; Bing-Quan Liu; Ming-Liang Liu; Lan-Ying Sun; Hui-Yuan Guo
Journal:  Yao Xue Xue Bao       Date:  2008-08
  5 in total

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