| Literature DB >> 21581872 |
Zhilong Wan1, Yun Chai, Mingliang Liu, Huiyuan Guo.
Abstract
The title compound, C(18)H(33)N(3)O(5), was prepared from N-tert-butoxy-carbonyl-4-piperidone using a nine-step reaction, including condensation, methyl-ation, oximation, hydrolysis, esterification, ammonolysis, Hoffmann degradation, tert-butoxy-carbonyl protection and methyl-ation. The E configuration of the methyl-oxime geometry of the compound is confirmed.Entities:
Year: 2009 PMID: 21581872 PMCID: PMC2968324 DOI: 10.1107/S1600536808044255
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C18H33N3O5 | |
| Monoclinic, | Mo |
| Hall symbol: -C 2yc | Cell parameters from 1707 reflections |
| θ = 2.7–21.1° | |
| µ = 0.09 mm−1 | |
| β = 112.769 (2)° | Prism, colourless |
| 0.40 × 0.20 × 0.11 mm | |
| Bruker SMART CCD area-detector diffractometer | 3699 independent reflections |
| Radiation source: Fine–focus sealed tube | 1915 reflections with |
| Graphite | |
| φ and ω scans | θmax = 25.0°, θmin = 1.5° |
| Absorption correction: multi-scan ( | |
| 10032 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 3699 reflections | (Δ/σ)max = 0.001 |
| 244 parameters | Δρmax = 0.23 e Å−3 |
| 0 restraints | Δρmin = −0.22 e Å−3 |
| Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
| Refinement. Refinement of |
| N1 | 0.18007 (8) | 0.2543 (3) | 0.60235 (9) | 0.0389 (6) | |
| N2 | 0.07900 (7) | 0.1687 (4) | 0.51326 (9) | 0.0367 (6) | |
| N3 | 0.16321 (7) | −0.1321 (4) | 0.47432 (9) | 0.0382 (6) | |
| O1 | 0.16324 (7) | 0.3113 (3) | 0.67977 (7) | 0.0496 (5) | |
| O2 | 0.21149 (7) | 0.5507 (3) | 0.65653 (8) | 0.0554 (6) | |
| O3 | 0.07112 (6) | 0.1423 (3) | 0.42229 (7) | 0.0525 (6) | |
| O4 | 0.01093 (7) | 0.3134 (3) | 0.44214 (8) | 0.0607 (6) | |
| O5 | 0.19807 (6) | −0.0836 (3) | 0.44880 (7) | 0.0452 (5) | |
| C1 | 0.15544 (9) | 0.0442 (4) | 0.59370 (10) | 0.0374 (7) | |
| H1A | 0.1361 | 0.0344 | 0.6175 | 0.045* | |
| H1B | 0.1809 | −0.0681 | 0.6057 | 0.045* | |
| C2 | 0.12010 (9) | 0.0043 (4) | 0.53070 (10) | 0.0335 (6) | |
| C3 | 0.15423 (9) | 0.0354 (4) | 0.49846 (10) | 0.0325 (6) | |
| C4 | 0.17891 (10) | 0.2510 (4) | 0.50509 (11) | 0.0387 (7) | |
| H4A | 0.1536 | 0.3625 | 0.4899 | 0.046* | |
| H4B | 0.2006 | 0.2542 | 0.4839 | 0.046* | |
| C5 | 0.20975 (10) | 0.2938 (5) | 0.56825 (11) | 0.0459 (8) | |
| H5A | 0.2390 | 0.2005 | 0.5813 | 0.055* | |
| H5B | 0.2213 | 0.4425 | 0.5732 | 0.055* | |
| C6 | 0.18713 (10) | 0.3856 (5) | 0.64739 (11) | 0.0399 (7) | |
| C7 | 0.15940 (11) | 0.4430 (5) | 0.72637 (12) | 0.0495 (8) | |
| C8 | 0.21026 (13) | 0.4764 (6) | 0.77309 (13) | 0.0738 (11) | |
| H8A | 0.2261 | 0.3388 | 0.7856 | 0.111* | |
| H8B | 0.2066 | 0.5494 | 0.8046 | 0.111* | |
| H8C | 0.2306 | 0.5623 | 0.7589 | 0.111* | |
| C9 | 0.13357 (14) | 0.6544 (6) | 0.70277 (15) | 0.0871 (13) | |
| H9A | 0.1561 | 0.7461 | 0.6934 | 0.131* | |
| H9B | 0.1241 | 0.7241 | 0.7309 | 0.131* | |
| H9C | 0.1041 | 0.6272 | 0.6690 | 0.131* | |
| C10 | 0.12728 (14) | 0.3024 (6) | 0.74676 (14) | 0.0903 (13) | |
| H10A | 0.0957 | 0.2762 | 0.7158 | 0.135* | |
| H10B | 0.1216 | 0.3738 | 0.7773 | 0.135* | |
| H10C | 0.1441 | 0.1674 | 0.7603 | 0.135* | |
| C11 | 0.09808 (10) | −0.2224 (4) | 0.52538 (12) | 0.0432 (7) | |
| H11A | 0.0769 | −0.2306 | 0.5466 | 0.065* | |
| H11B | 0.1248 | −0.3256 | 0.5403 | 0.065* | |
| H11C | 0.0786 | −0.2537 | 0.4859 | 0.065* | |
| C12 | 0.05026 (10) | 0.2153 (5) | 0.45784 (12) | 0.0417 (7) | |
| C13 | 0.05602 (10) | 0.2229 (5) | 0.55381 (11) | 0.0492 (8) | |
| H13A | 0.0295 | 0.3257 | 0.5367 | 0.074* | |
| H13B | 0.0810 | 0.2841 | 0.5877 | 0.074* | |
| H13C | 0.0425 | 0.0944 | 0.5636 | 0.074* | |
| C14 | 0.04913 (11) | 0.1885 (6) | 0.36115 (12) | 0.0584 (9) | |
| C15 | 0.04440 (16) | 0.4286 (7) | 0.35091 (17) | 0.1048 (14) | |
| H15A | 0.0185 | 0.4844 | 0.3620 | 0.157* | |
| H15B | 0.0360 | 0.4573 | 0.3111 | 0.157* | |
| H15C | 0.0757 | 0.4972 | 0.3731 | 0.157* | |
| C17 | 0.08735 (13) | 0.0915 (7) | 0.34093 (13) | 0.0907 (13) | |
| H17A | 0.1198 | 0.1530 | 0.3622 | 0.136* | |
| H17B | 0.0779 | 0.1217 | 0.3010 | 0.136* | |
| H17C | 0.0887 | −0.0621 | 0.3467 | 0.136* | |
| C16 | −0.00059 (12) | 0.0715 (7) | 0.33491 (14) | 0.0906 (13) | |
| H16A | 0.0039 | −0.0778 | 0.3460 | 0.136* | |
| H16B | −0.0129 | 0.0822 | 0.2940 | 0.136* | |
| H16C | −0.0244 | 0.1360 | 0.3481 | 0.136* | |
| C18 | 0.20473 (11) | −0.2741 (5) | 0.42114 (13) | 0.0557 (9) | |
| H18A | 0.2217 | −0.3815 | 0.4493 | 0.083* | |
| H18B | 0.2245 | −0.2411 | 0.3992 | 0.083* | |
| H18C | 0.1725 | −0.3283 | 0.3962 | 0.083* |
| N1 | 0.0452 (13) | 0.0367 (15) | 0.0395 (13) | −0.0085 (11) | 0.0215 (11) | −0.0060 (12) |
| N2 | 0.0359 (12) | 0.0426 (15) | 0.0368 (13) | 0.0076 (11) | 0.0198 (11) | 0.0002 (11) |
| N3 | 0.0368 (12) | 0.0427 (15) | 0.0420 (13) | 0.0011 (11) | 0.0226 (11) | −0.0024 (12) |
| O1 | 0.0665 (13) | 0.0501 (13) | 0.0394 (11) | −0.0098 (11) | 0.0284 (10) | −0.0081 (10) |
| O2 | 0.0687 (14) | 0.0486 (14) | 0.0528 (13) | −0.0193 (12) | 0.0277 (11) | −0.0143 (11) |
| O3 | 0.0471 (11) | 0.0771 (16) | 0.0335 (11) | 0.0188 (11) | 0.0157 (9) | 0.0062 (11) |
| O4 | 0.0469 (12) | 0.0716 (16) | 0.0619 (14) | 0.0252 (12) | 0.0193 (10) | 0.0080 (12) |
| O5 | 0.0509 (11) | 0.0453 (13) | 0.0538 (12) | −0.0003 (10) | 0.0360 (10) | −0.0070 (10) |
| C1 | 0.0438 (16) | 0.0357 (18) | 0.0371 (16) | −0.0012 (14) | 0.0203 (13) | −0.0006 (13) |
| C2 | 0.0361 (15) | 0.0331 (17) | 0.0349 (15) | 0.0017 (13) | 0.0178 (12) | 0.0011 (13) |
| C3 | 0.0314 (14) | 0.0359 (17) | 0.0331 (15) | 0.0034 (13) | 0.0155 (12) | 0.0006 (13) |
| C4 | 0.0451 (16) | 0.0350 (17) | 0.0442 (17) | −0.0010 (14) | 0.0264 (13) | −0.0012 (14) |
| C5 | 0.0468 (17) | 0.0457 (19) | 0.0510 (18) | −0.0088 (15) | 0.0254 (15) | −0.0077 (15) |
| C6 | 0.0454 (17) | 0.0398 (19) | 0.0361 (16) | 0.0002 (15) | 0.0174 (14) | −0.0027 (15) |
| C7 | 0.066 (2) | 0.050 (2) | 0.0392 (17) | 0.0003 (17) | 0.0280 (16) | −0.0052 (16) |
| C8 | 0.090 (3) | 0.084 (3) | 0.0401 (18) | 0.001 (2) | 0.0172 (19) | −0.0105 (19) |
| C9 | 0.110 (3) | 0.089 (3) | 0.074 (3) | 0.044 (3) | 0.049 (2) | 0.007 (2) |
| C10 | 0.127 (3) | 0.099 (3) | 0.071 (2) | −0.034 (3) | 0.066 (2) | −0.023 (2) |
| C11 | 0.0486 (16) | 0.0375 (18) | 0.0494 (17) | −0.0058 (14) | 0.0252 (14) | −0.0037 (15) |
| C12 | 0.0406 (17) | 0.0440 (19) | 0.0439 (18) | 0.0051 (15) | 0.0201 (14) | 0.0005 (15) |
| C13 | 0.0461 (17) | 0.058 (2) | 0.0512 (18) | 0.0062 (15) | 0.0276 (15) | −0.0066 (16) |
| C14 | 0.054 (2) | 0.082 (3) | 0.0373 (17) | 0.0154 (19) | 0.0156 (15) | 0.0125 (18) |
| C15 | 0.120 (3) | 0.109 (4) | 0.092 (3) | 0.012 (3) | 0.048 (3) | 0.044 (3) |
| C17 | 0.079 (2) | 0.151 (4) | 0.046 (2) | 0.030 (3) | 0.0297 (19) | 0.010 (2) |
| C16 | 0.072 (3) | 0.130 (4) | 0.057 (2) | 0.002 (3) | 0.0116 (19) | −0.011 (2) |
| C18 | 0.065 (2) | 0.052 (2) | 0.065 (2) | −0.0031 (17) | 0.0409 (17) | −0.0190 (17) |
| N1—C6 | 1.352 (3) | C8—H8B | 0.9600 |
| N1—C5 | 1.455 (3) | C8—H8C | 0.9600 |
| N1—C1 | 1.457 (3) | C9—H9A | 0.9600 |
| N2—C12 | 1.359 (3) | C9—H9B | 0.9600 |
| N2—C13 | 1.463 (3) | C9—H9C | 0.9600 |
| N2—C2 | 1.494 (3) | C10—H10A | 0.9600 |
| N3—C3 | 1.280 (3) | C10—H10B | 0.9600 |
| N3—O5 | 1.423 (2) | C10—H10C | 0.9600 |
| O1—C6 | 1.342 (3) | C11—H11A | 0.9600 |
| O1—C7 | 1.476 (3) | C11—H11B | 0.9600 |
| O2—C6 | 1.210 (3) | C11—H11C | 0.9600 |
| O3—C12 | 1.342 (3) | C13—H13A | 0.9600 |
| O3—C14 | 1.459 (3) | C13—H13B | 0.9600 |
| O4—C12 | 1.211 (3) | C13—H13C | 0.9600 |
| O5—C18 | 1.423 (3) | C14—C15 | 1.505 (5) |
| C1—C2 | 1.548 (3) | C14—C17 | 1.510 (4) |
| C1—H1A | 0.9700 | C14—C16 | 1.513 (4) |
| C1—H1B | 0.9700 | C15—H15A | 0.9600 |
| C2—C3 | 1.517 (3) | C15—H15B | 0.9600 |
| C2—C11 | 1.525 (3) | C15—H15C | 0.9600 |
| C3—C4 | 1.491 (3) | C17—H17A | 0.9600 |
| C4—C5 | 1.525 (3) | C17—H17B | 0.9600 |
| C4—H4A | 0.9700 | C17—H17C | 0.9600 |
| C4—H4B | 0.9700 | C16—H16A | 0.9600 |
| C5—H5A | 0.9700 | C16—H16B | 0.9600 |
| C5—H5B | 0.9700 | C16—H16C | 0.9600 |
| C7—C8 | 1.502 (4) | C18—H18A | 0.9600 |
| C7—C10 | 1.502 (4) | C18—H18B | 0.9600 |
| C7—C9 | 1.510 (4) | C18—H18C | 0.9600 |
| C8—H8A | 0.9600 | ||
| C6—N1—C5 | 118.1 (2) | C7—C9—H9C | 109.5 |
| C6—N1—C1 | 124.7 (2) | H9A—C9—H9C | 109.5 |
| C5—N1—C1 | 115.2 (2) | H9B—C9—H9C | 109.5 |
| C12—N2—C13 | 114.7 (2) | C7—C10—H10A | 109.5 |
| C12—N2—C2 | 123.2 (2) | C7—C10—H10B | 109.5 |
| C13—N2—C2 | 118.2 (2) | H10A—C10—H10B | 109.5 |
| C3—N3—O5 | 110.9 (2) | C7—C10—H10C | 109.5 |
| C6—O1—C7 | 121.1 (2) | H10A—C10—H10C | 109.5 |
| C12—O3—C14 | 121.7 (2) | H10B—C10—H10C | 109.5 |
| C18—O5—N3 | 107.7 (2) | C2—C11—H11A | 109.5 |
| N1—C1—C2 | 112.7 (2) | C2—C11—H11B | 109.5 |
| N1—C1—H1A | 109.1 | H11A—C11—H11B | 109.5 |
| C2—C1—H1A | 109.1 | C2—C11—H11C | 109.5 |
| N1—C1—H1B | 109.1 | H11A—C11—H11C | 109.5 |
| C2—C1—H1B | 109.1 | H11B—C11—H11C | 109.5 |
| H1A—C1—H1B | 107.8 | O4—C12—O3 | 123.7 (3) |
| N2—C2—C3 | 111.2 (2) | O4—C12—N2 | 124.5 (3) |
| N2—C2—C11 | 110.1 (2) | O3—C12—N2 | 111.8 (2) |
| C3—C2—C11 | 113.9 (2) | N2—C13—H13A | 109.5 |
| N2—C2—C1 | 109.1 (2) | N2—C13—H13B | 109.5 |
| C3—C2—C1 | 103.36 (19) | H13A—C13—H13B | 109.5 |
| C11—C2—C1 | 108.9 (2) | N2—C13—H13C | 109.5 |
| N3—C3—C4 | 127.0 (2) | H13A—C13—H13C | 109.5 |
| N3—C3—C2 | 116.7 (2) | H13B—C13—H13C | 109.5 |
| C4—C3—C2 | 115.7 (2) | O3—C14—C15 | 110.5 (3) |
| C3—C4—C5 | 109.4 (2) | O3—C14—C17 | 102.1 (2) |
| C3—C4—H4A | 109.8 | C15—C14—C17 | 111.3 (3) |
| C5—C4—H4A | 109.8 | O3—C14—C16 | 108.8 (3) |
| C3—C4—H4B | 109.8 | C15—C14—C16 | 112.9 (3) |
| C5—C4—H4B | 109.8 | C17—C14—C16 | 110.7 (3) |
| H4A—C4—H4B | 108.2 | C14—C15—H15A | 109.5 |
| N1—C5—C4 | 110.9 (2) | C14—C15—H15B | 109.5 |
| N1—C5—H5A | 109.5 | H15A—C15—H15B | 109.5 |
| C4—C5—H5A | 109.5 | C14—C15—H15C | 109.5 |
| N1—C5—H5B | 109.5 | H15A—C15—H15C | 109.5 |
| C4—C5—H5B | 109.5 | H15B—C15—H15C | 109.5 |
| H5A—C5—H5B | 108.0 | C14—C17—H17A | 109.5 |
| O2—C6—O1 | 124.7 (3) | C14—C17—H17B | 109.5 |
| O2—C6—N1 | 123.8 (3) | H17A—C17—H17B | 109.5 |
| O1—C6—N1 | 111.5 (3) | C14—C17—H17C | 109.5 |
| O1—C7—C8 | 110.8 (2) | H17A—C17—H17C | 109.5 |
| O1—C7—C10 | 101.8 (2) | H17B—C17—H17C | 109.5 |
| C8—C7—C10 | 110.7 (3) | C14—C16—H16A | 109.5 |
| O1—C7—C9 | 109.8 (2) | C14—C16—H16B | 109.5 |
| C8—C7—C9 | 112.1 (3) | H16A—C16—H16B | 109.5 |
| C10—C7—C9 | 111.3 (3) | C14—C16—H16C | 109.5 |
| C7—C8—H8A | 109.5 | H16A—C16—H16C | 109.5 |
| C7—C8—H8B | 109.5 | H16B—C16—H16C | 109.5 |
| H8A—C8—H8B | 109.5 | O5—C18—H18A | 109.5 |
| C7—C8—H8C | 109.5 | O5—C18—H18B | 109.5 |
| H8A—C8—H8C | 109.5 | H18A—C18—H18B | 109.5 |
| H8B—C8—H8C | 109.5 | O5—C18—H18C | 109.5 |
| C7—C9—H9A | 109.5 | H18A—C18—H18C | 109.5 |
| C7—C9—H9B | 109.5 | H18B—C18—H18C | 109.5 |
| H9A—C9—H9B | 109.5 | ||
| C3—N3—O5—C18 | −177.9 (2) | C6—N1—C5—C4 | −143.2 (2) |
| C6—N1—C1—C2 | 139.0 (2) | C1—N1—C5—C4 | 52.3 (3) |
| C5—N1—C1—C2 | −57.6 (3) | C3—C4—C5—N1 | −49.9 (3) |
| C12—N2—C2—C3 | 48.3 (3) | C7—O1—C6—O2 | 8.0 (4) |
| C13—N2—C2—C3 | −155.2 (2) | C7—O1—C6—N1 | −171.1 (2) |
| C12—N2—C2—C11 | −78.9 (3) | C5—N1—C6—O2 | 10.3 (4) |
| C13—N2—C2—C11 | 77.7 (3) | C1—N1—C6—O2 | 173.3 (3) |
| C12—N2—C2—C1 | 161.6 (2) | C5—N1—C6—O1 | −170.6 (2) |
| C13—N2—C2—C1 | −41.8 (3) | C1—N1—C6—O1 | −7.6 (4) |
| N1—C1—C2—N2 | −62.4 (3) | C6—O1—C7—C8 | −66.1 (3) |
| N1—C1—C2—C3 | 56.0 (3) | C6—O1—C7—C10 | 176.2 (3) |
| N1—C1—C2—C11 | 177.4 (2) | C6—O1—C7—C9 | 58.3 (3) |
| O5—N3—C3—C4 | −5.2 (3) | C14—O3—C12—O4 | 4.0 (4) |
| O5—N3—C3—C2 | −176.31 (19) | C14—O3—C12—N2 | −175.0 (2) |
| N2—C2—C3—N3 | −129.7 (2) | C13—N2—C12—O4 | 7.3 (4) |
| C11—C2—C3—N3 | −4.6 (3) | C2—N2—C12—O4 | 164.6 (3) |
| C1—C2—C3—N3 | 113.4 (2) | C13—N2—C12—O3 | −173.7 (2) |
| N2—C2—C3—C4 | 58.2 (3) | C2—N2—C12—O3 | −16.5 (4) |
| C11—C2—C3—C4 | −176.7 (2) | C12—O3—C14—C15 | 57.0 (4) |
| C1—C2—C3—C4 | −58.8 (3) | C12—O3—C14—C17 | 175.5 (3) |
| N3—C3—C4—C5 | −113.4 (3) | C12—O3—C14—C16 | −67.5 (4) |
| C2—C3—C4—C5 | 57.8 (3) |