Literature DB >> 21581862

Redetermination of 1-carboxy-cyclo-hexan-1-aminium chloride.

Lusbely M Belandria, Gerzon E Delgado, Asiloé J Mora, Luis E Seijas, Teresa González.   

Abstract

The crystal structure of the title compound, C(7)H(14)NO(2) (+)·Cl(-), was reported previously [Chacko, Srinivasan & Zand (1975 ▶). J. Cryst. Mol. Struct.5, 353-357] from Weissenberg photographic data with R = 0.113. It has now been redetermined, providing a significant increase in the precision of the derived geometric parameters, viz. mean σ(C-C) = 0.003 Å in the present work compared with 0.021 Å for the previous work. The complete cation is generated by crystallographic mirrror symmetry, with three C atoms, two O atoms and the N atom lying on the reflecting plane; the chloride anion also has m site symmetry. The crystal structure is established by a two-dimensional network of O-H⋯Cl and N-H⋯Cl hydrogen bonds, generating C(1) (2)(4) and C(1) (2)(7) chains, and R(2) (4)(8) and R(2) (4)(14) rings.

Entities:  

Year:  2009        PMID: 21581862      PMCID: PMC2968223          DOI: 10.1107/S1600536808044243

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the earlier structure determination of the title salt, see: Chacko et al. (1971 ▶, 1975 ▶). For related literature, see Rodríguez-Ropero et al. (2008 ▶). For the crystal structure of the pure amino acid, see: Valle et al. (1988 ▶). For ring conformation analysis, see: Cremer & Pople (1975 ▶). For hydrogen-bond motifs in graph-set notation, see: Etter (1990 ▶).

Experimental

Crystal data

C7H14NO2Cl− M = 179.64 Monoclinic, a = 7.382 (3) Å b = 6.357 (2) Å c = 9.374 (3) Å β = 96.239 (10)° V = 437.3 (3) Å3 Z = 2 Mo Kα radiation μ = 0.39 mm−1 T = 298 (2) K 0.31 × 0.27 × 0.18 mm

Data collection

Rigaku AFC-7S Mercury diffractometer Absorption correction: multi-scan (Jacobson, 1998 ▶) T min = 0.880, T max = 0.930 4638 measured reflections 845 independent reflections 789 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.033 wR(F 2) = 0.088 S = 1.01 845 reflections 85 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.18 e Å−3 Δρmin = −0.15 e Å−3 Data collection: CrystalClear (Rigaku, 2002 ▶); cell refinement: CrystalClear; data reduction: CrystalStructure (Rigaku/MSC, 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 1999 ▶); software used to prepare material for publication: PLATON (Spek, 2003 ▶) and publCIF (Westrip, 2009 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808044243/bh2212sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808044243/bh2212Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C7H14NO2+·ClF(000) = 192
Mr = 179.64Dx = 1.364 Mg m3
Monoclinic, P21/mMo Kα radiation, λ = 0.71070 Å
Hall symbol: -P 2ybCell parameters from 1650 reflections
a = 7.382 (3) Åθ = 2.2–27.2°
b = 6.357 (2) ŵ = 0.39 mm1
c = 9.374 (3) ÅT = 298 K
β = 96.239 (10)°Block, colourless
V = 437.3 (3) Å30.31 × 0.27 × 0.18 mm
Z = 2
Rigaku AFC-7S Mercury diffractometer845 independent reflections
Radiation source: Normal-focus sealed tube789 reflections with I > 2σ(I)
graphiteRint = 0.023
Detector resolution: 14.6306 pixels mm-1θmax = 25.0°, θmin = 2.2°
ω scansh = −8→8
Absorption correction: multi-scan (Jacobson, 1998)k = −6→7
Tmin = 0.880, Tmax = 0.930l = −11→11
4638 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.033H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.088w = 1/[σ2(Fo2) + (0.047P)2 + 0.1831P] where P = (Fo2 + 2Fc2)/3
S = 1.01(Δ/σ)max < 0.001
845 reflectionsΔρmax = 0.18 e Å3
85 parametersΔρmin = −0.15 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
0 constraintsExtinction coefficient: 0.042 (10)
Primary atom site location: structure-invariant direct methods
xyzUiso*/Ueq
Cl0.41343 (8)0.25000.64377 (6)0.0414 (3)
O20.5446 (2)0.25000.04758 (18)0.0511 (5)
O10.2629 (3)0.2500−0.06850 (18)0.0528 (5)
H10.324 (5)0.2500−0.146 (4)0.079*
N10.4370 (3)0.25000.3054 (2)0.0343 (5)
H1A0.506 (3)0.138 (3)0.300 (2)0.051*
H1B0.398 (4)0.25000.393 (3)0.051*
C10.2863 (3)0.25000.1837 (2)0.0292 (5)
C20.1715 (2)0.4484 (3)0.19289 (19)0.0408 (5)
H2A0.251 (3)0.566 (3)0.1923 (19)0.049*
H2B0.090 (3)0.452 (3)0.107 (2)0.049*
C30.0597 (3)0.4450 (4)0.3193 (2)0.0539 (6)
H3A0.140 (3)0.449 (4)0.409 (2)0.065*
H3B−0.018 (3)0.571 (4)0.315 (2)0.065*
C4−0.0557 (4)0.25000.3201 (3)0.0626 (9)
H4A−0.145 (5)0.25000.232 (4)0.075*
H4B−0.148 (5)0.25000.397 (4)0.075*
C50.3819 (3)0.25000.0475 (2)0.0358 (5)
U11U22U33U12U13U23
Cl0.0457 (4)0.0544 (4)0.0238 (4)0.0000.0025 (2)0.000
O20.0359 (10)0.0837 (14)0.0345 (10)0.0000.0078 (7)0.000
O10.0443 (11)0.0932 (15)0.0205 (9)0.0000.0023 (7)0.000
N10.0335 (11)0.0449 (12)0.0238 (10)0.000−0.0002 (8)0.000
C10.0303 (11)0.0355 (12)0.0211 (11)0.000−0.0004 (8)0.000
C20.0439 (10)0.0402 (10)0.0373 (10)0.0074 (8)−0.0004 (8)0.0024 (7)
C30.0497 (11)0.0707 (14)0.0412 (10)0.0221 (10)0.0052 (9)−0.0058 (10)
C40.0386 (15)0.105 (3)0.0449 (17)0.0000.0076 (13)0.000
C50.0385 (13)0.0425 (13)0.0262 (12)0.0000.0025 (10)0.000
O2—C51.201 (3)C2—C31.516 (3)
O1—C51.322 (3)C2—H2A0.95 (2)
O1—H10.89 (4)C2—H2B0.95 (2)
N1—C11.504 (3)C3—C41.505 (3)
N1—H1A0.88 (2)C3—H3A0.97 (2)
N1—H1B0.90 (3)C3—H3B0.98 (2)
C1—C51.524 (3)C4—H4A0.99 (3)
C1—C21.528 (2)C4—H4B1.05 (4)
C5—O1—H1109 (2)C4—C3—C2111.85 (19)
C1—N1—H1A110.2 (13)C4—C3—H3A107.9 (13)
C1—N1—H1B114.0 (18)C2—C3—H3A109.9 (12)
H1A—N1—H1B107.1 (16)C4—C3—H3B110.2 (13)
N1—C1—C5105.28 (18)C2—C3—H3B108.4 (13)
N1—C1—C2109.04 (12)H3A—C3—H3B108.5 (17)
C5—C1—C2110.97 (12)C3—C4—H4A108.6 (10)
C3—C2—C1112.64 (16)C3—C4—H4B114.6 (8)
C3—C2—H2A113.8 (11)H4A—C4—H4B99 (3)
C1—C2—H2A107.7 (12)O2—C5—O1125.2 (2)
C3—C2—H2B108.3 (11)O2—C5—C1123.6 (2)
C1—C2—H2B105.8 (12)O1—C5—C1111.2 (2)
H2A—C2—H2B108.2 (16)
D—H···AD—HH···AD···AD—H···A
N1—H1B···Cl0.90 (3)2.34 (3)3.196 (2)158 (2)
N1—H1A···Cli0.88 (2)2.58 (2)3.3816 (13)152.4 (17)
O1—H1···Clii0.89 (4)2.15 (4)3.027 (2)168 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1B⋯Cl0.90 (3)2.34 (3)3.196 (2)158 (2)
N1—H1A⋯Cli0.88 (2)2.58 (2)3.3816 (13)152.4 (17)
O1—H1⋯Clii0.89 (4)2.15 (4)3.027 (2)168 (3)

Symmetry codes: (i) ; (ii) .

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