Literature DB >> 21581856

1,2,3,6,7,8-Hexahydro-cinnolino[5,4,3-cde]cinnoline.

Zhi-Qiang Gao1.   

Abstract

The title compound, C(12)H(12)N(4), was synthesized by the reaction of hydrazine hydrate and 9-methyl-3,4,6,7-tetra-hydro-2H-xanthene-1,8(5H,9H)-dione in ethanol. In the crystal, the mol-ecule lies across an inversion centre. The pyridazine rings are coplanar and the C(6) rings adopt envelope conformations.

Entities:  

Year:  2009        PMID: 21581856      PMCID: PMC2968206          DOI: 10.1107/S1600536808044036

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological properties of cinnoline and its derivatives, see: Abdelrazek et al. (2006 ▶); Gomtsyan et al. (2005 ▶); Inoue et al. (1993 ▶); Lewgowd & Stanczak (2007 ▶); Lewgowd et al. (2005 ▶); Singh et al. (2003 ▶); Stefanska et al. (2003 ▶); Tutsumi et al. (1992 ▶).

Experimental

Crystal data

C12H12N4 M = 212.26 Monoclinic, a = 9.698 (5) Å b = 5.875 (3) Å c = 10.023 (5) Å β = 117.314 (6)° V = 507.4 (4) Å3 Z = 2 Mo Kα radiation μ = 0.09 mm−1 T = 298 (2) K 0.55 × 0.41 × 0.09 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.953, T max = 0.992 2508 measured reflections 890 independent reflections 575 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.123 S = 1.01 890 reflections 97 parameters All H-atom parameters refined Δρmax = 0.16 e Å−3 Δρmin = −0.15 e Å−3 Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT (Bruker, 1999 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808044036/ci2750sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808044036/ci2750Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H12N4F(000) = 224
Mr = 212.26Dx = 1.389 Mg m3
Monoclinic, P21/cMelting point = 543–544 K
Hall symbol: -P 2ybcMo Kα radiation, λ = 0.71073 Å
a = 9.698 (5) ÅCell parameters from 734 reflections
b = 5.875 (3) Åθ = 2.4–26.3°
c = 10.023 (5) ŵ = 0.09 mm1
β = 117.314 (6)°T = 298 K
V = 507.4 (4) Å3Plate, colourless
Z = 20.55 × 0.41 × 0.09 mm
Bruker SMART CCD area-detector diffractometer890 independent reflections
Radiation source: fine-focus sealed tube575 reflections with I > 2σ(I)
graphiteRint = 0.028
φ and ω scansθmax = 25.0°, θmin = 4.1°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −11→11
Tmin = 0.953, Tmax = 0.992k = −6→6
2508 measured reflectionsl = −11→11
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.041Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.123All H-atom parameters refined
S = 1.01w = 1/[σ2(Fo2) + (0.0655P)2 + 0.0552P] where P = (Fo2 + 2Fc2)/3
890 reflections(Δ/σ)max = 0.001
97 parametersΔρmax = 0.16 e Å3
0 restraintsΔρmin = −0.15 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.7159 (2)−0.2597 (3)0.65617 (19)0.0547 (6)
N20.5861 (2)−0.3398 (3)0.66438 (18)0.0555 (6)
C10.7050 (2)−0.0820 (4)0.5729 (2)0.0466 (6)
C20.56377 (19)0.0384 (3)0.49395 (18)0.0390 (5)
C30.5474 (2)0.2352 (3)0.4062 (2)0.0450 (5)
C40.6864 (3)0.3211 (5)0.3949 (3)0.0581 (7)
C50.8354 (3)0.2567 (4)0.5326 (3)0.0647 (7)
C60.8445 (3)0.0004 (4)0.5597 (3)0.0621 (7)
H10.682 (2)0.250 (4)0.305 (3)0.065 (6)*
H20.678 (2)0.487 (4)0.382 (2)0.076 (7)*
H30.930 (3)0.308 (4)0.522 (3)0.086 (8)*
H40.839 (3)0.340 (4)0.623 (3)0.079 (7)*
H50.846 (2)−0.086 (4)0.470 (2)0.072 (7)*
H60.936 (3)−0.039 (4)0.649 (3)0.081 (7)*
U11U22U33U12U13U23
N10.0567 (12)0.0508 (12)0.0500 (10)0.0164 (9)0.0187 (9)0.0061 (8)
N20.0652 (12)0.0458 (11)0.0474 (11)0.0115 (9)0.0189 (9)0.0086 (8)
C10.0501 (12)0.0467 (12)0.0395 (10)0.0102 (10)0.0175 (9)−0.0019 (10)
C20.0445 (11)0.0386 (11)0.0306 (9)0.0072 (8)0.0146 (8)−0.0029 (8)
C30.0574 (13)0.0386 (12)0.0351 (10)0.0051 (10)0.0178 (9)−0.0010 (9)
C40.0737 (17)0.0505 (15)0.0555 (14)−0.0061 (12)0.0344 (13)−0.0027 (12)
C50.0595 (15)0.0680 (17)0.0681 (16)−0.0087 (13)0.0306 (13)−0.0101 (13)
C60.0484 (14)0.0707 (18)0.0650 (16)0.0111 (11)0.0242 (13)−0.0033 (12)
N1—C11.310 (3)C4—C51.518 (3)
N1—N21.381 (2)C4—H10.98 (2)
N2—C3i1.309 (3)C4—H20.98 (2)
C1—C21.417 (3)C5—C61.526 (3)
C1—C61.499 (3)C5—H31.01 (2)
C2—C2i1.373 (3)C5—H41.01 (2)
C2—C31.417 (3)C6—H51.04 (2)
C3—N2i1.309 (3)C6—H60.95 (2)
C3—C41.492 (3)
C1—N1—N2120.01 (17)C5—C4—H2111.0 (13)
C3i—N2—N1120.67 (18)H1—C4—H2109.4 (18)
N1—C1—C2121.89 (19)C4—C5—C6111.2 (2)
N1—C1—C6120.07 (18)C4—C5—H3111.1 (13)
C2—C1—C6118.0 (2)C6—C5—H3109.2 (14)
C2i—C2—C3118.3 (2)C4—C5—H4108.6 (14)
C2i—C2—C1117.8 (2)C6—C5—H4110.1 (13)
C3—C2—C1123.94 (17)H3—C5—H4106.5 (19)
N2i—C3—C2121.33 (19)C1—C6—C5110.70 (19)
N2i—C3—C4120.3 (2)C1—C6—H5107.1 (12)
C2—C3—C4118.39 (18)C5—C6—H5110.5 (12)
C3—C4—C5111.3 (2)C1—C6—H6109.2 (14)
C3—C4—H1105.8 (12)C5—C6—H6111.1 (15)
C5—C4—H1110.6 (12)H5—C6—H6108.2 (19)
C3—C4—H2108.6 (13)
  6 in total

1.  Synthesis and molluscicidal activity of new cinnoline and pyrano [2,3-c]pyrazole derivatives.

Authors:  Fathy M Abdelrazek; Peter Metz; Nadia H Metwally; Sherif F El-Mahrouky
Journal:  Arch Pharm (Weinheim)       Date:  2006-08       Impact factor: 3.751

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Novel transient receptor potential vanilloid 1 receptor antagonists for the treatment of pain: structure-activity relationships for ureas with quinoline, isoquinoline, quinazoline, phthalazine, quinoxaline, and cinnoline moieties.

Authors:  Arthur Gomtsyan; Erol K Bayburt; Robert G Schmidt; Guo Zhu Zheng; Richard J Perner; Stanley Didomenico; John R Koenig; Sean Turner; Tammie Jinkerson; Irene Drizin; Steven M Hannick; Bryan S Macri; Heath A McDonald; Prisca Honore; Carol T Wismer; Kennan C Marsh; Jill Wetter; Kent D Stewart; Tetsuro Oie; Michael F Jarvis; Carol S Surowy; Connie R Faltynek; Chih-Hung Lee
Journal:  J Med Chem       Date:  2005-02-10       Impact factor: 7.446

4.  Synthesis and cytotoxicity of new potential intercalators based on tricyclic systems of some pyrimido[5,4-c]cinnoline and pyrimido[5,4-c]quinoline derivatives. Part I.

Authors:  Wiesława Lewgowd; Andrzej Stańczak; Zbigniew Ochocki; Urszula Krajewska; Marek Rózalski
Journal:  Acta Pol Pharm       Date:  2005 Mar-Apr       Impact factor: 0.330

Review 5.  Cinnoline derivatives with biological activity.

Authors:  Wieslawa Lewgowd; Andrzej Stanczak
Journal:  Arch Pharm (Weinheim)       Date:  2007-02       Impact factor: 3.751

6.  Synthesis and biological evaluation of 2,7-Dihydro-3H-dibenzo[de,h]cinnoline-3,7-dione derivatives, a novel group of anticancer agents active on a multidrug resistant cell line.

Authors:  Barbara Stefańska; Małgorzata Arciemiuk; Maria M Bontemps-Gracz; Maria Dzieduszycka; Agnieszka Kupiec; Sante Martelli; Edward Borowski
Journal:  Bioorg Med Chem       Date:  2003-02-20       Impact factor: 3.641

  6 in total

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