| Literature DB >> 21581838 |
Ling-Hua Zhuang, Guo-Wei Wang.
Abstract
The mol-ecule of the title dicarbonyl compound, C(13)H(20)O(6), possesses approximate local twofold symmetry. In the crystal, inter-molecular C-H⋯O hydrogen bonds link the mol-ecules, generating a chain structure.Entities:
Year: 2009 PMID: 21581838 PMCID: PMC2968235 DOI: 10.1107/S1600536808043705
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C13H20O6 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 27 reflections |
| θ = 8–15° | |
| µ = 0.10 mm−1 | |
| β = 107.35 (3)° | Block, colourless |
| 0.30 × 0.20 × 0.10 mm | |
| Enraf–Nonius CAD-4 diffractometer | 1783 reflections with |
| Radiation source: fine-focus sealed tube | |
| graphite | θmax = 25.3°, θmin = 1.9° |
| ω/2θ scans | |
| Absorption correction: ψ scan (North | |
| 2531 measured reflections | 3 standard reflections every 200 reflections |
| 2531 independent reflections | intensity decay: 9% |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 2531 reflections | (Δ/σ)max = 0.001 |
| 172 parameters | Δρmax = 0.38 e Å−3 |
| 0 restraints | Δρmin = −0.25 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 1.1970 (2) | −0.2798 (3) | 0.80271 (19) | 0.0587 (7) | |
| O2 | 1.1274 (2) | −0.0419 (2) | 0.80976 (18) | 0.0552 (7) | |
| O3 | 0.5191 (2) | −0.3553 (3) | 0.66776 (18) | 0.0646 (7) | |
| O4 | 0.5065 (2) | −0.1212 (3) | 0.60519 (17) | 0.0585 (7) | |
| O5 | 0.7976 (2) | 0.0496 (2) | 0.94983 (17) | 0.0506 (6) | |
| O6 | 0.8453 (2) | −0.4676 (2) | 0.96422 (18) | 0.0567 (7) | |
| C1 | 1.2919 (4) | −0.2184 (5) | 0.7683 (3) | 0.0710 (12) | |
| H1A | 1.3430 | −0.3006 | 0.7586 | 0.106* | |
| H1B | 1.3407 | −0.1472 | 0.8136 | 0.106* | |
| H1C | 1.2556 | −0.1660 | 0.7097 | 0.106* | |
| C2 | 1.1177 (3) | −0.1782 (3) | 0.8194 (2) | 0.0401 (7) | |
| C3 | 1.0191 (3) | −0.2557 (3) | 0.8502 (2) | 0.0408 (7) | |
| H3A | 1.0564 | −0.3225 | 0.9033 | 0.049* | |
| H3B | 0.9697 | −0.3190 | 0.7991 | 0.049* | |
| C4 | 0.9365 (2) | −0.1393 (3) | 0.8785 (2) | 0.0360 (7) | |
| H4A | 0.9057 | −0.0673 | 0.8269 | 0.043* | |
| H4B | 0.9858 | −0.0814 | 0.9324 | 0.043* | |
| C5 | 0.4002 (3) | −0.1660 (5) | 0.5299 (3) | 0.0597 (10) | |
| H5A | 0.3724 | −0.0805 | 0.4881 | 0.089* | |
| H5B | 0.3361 | −0.1974 | 0.5557 | 0.089* | |
| H5C | 0.4211 | −0.2501 | 0.4957 | 0.089* | |
| C6 | 0.5572 (3) | −0.2265 (4) | 0.6703 (2) | 0.0430 (7) | |
| C7 | 0.6632 (3) | −0.1613 (4) | 0.7454 (2) | 0.0513 (8) | |
| H7A | 0.6340 | −0.0785 | 0.7769 | 0.062* | |
| H7B | 0.7214 | −0.1179 | 0.7163 | 0.062* | |
| C8 | 0.7290 (3) | −0.2793 (3) | 0.8186 (2) | 0.0413 (7) | |
| H8A | 0.7683 | −0.3542 | 0.7887 | 0.050* | |
| H8B | 0.6686 | −0.3333 | 0.8410 | 0.050* | |
| C9 | 0.6618 (3) | −0.1291 (4) | 0.9838 (3) | 0.0582 (9) | |
| H9A | 0.6315 | −0.0401 | 1.0081 | 0.087* | |
| H9B | 0.6907 | −0.2033 | 1.0334 | 0.087* | |
| H9C | 0.5967 | −0.1734 | 0.9338 | 0.087* | |
| C10 | 0.7649 (3) | −0.0831 (4) | 0.9467 (2) | 0.0393 (7) | |
| C11 | 0.9581 (3) | −0.2844 (4) | 1.0738 (2) | 0.0539 (9) | |
| H11A | 0.9808 | −0.3720 | 1.1146 | 0.081* | |
| H11B | 0.9172 | −0.2102 | 1.1018 | 0.081* | |
| H11C | 1.0305 | −0.2389 | 1.0648 | 0.081* | |
| C12 | 0.8733 (3) | −0.3344 (3) | 0.9802 (2) | 0.0394 (7) | |
| C13 | 0.8265 (2) | −0.2094 (3) | 0.9038 (2) | 0.0341 (6) |
| O1 | 0.0587 (14) | 0.0424 (13) | 0.0902 (18) | 0.0057 (11) | 0.0453 (14) | 0.0031 (12) |
| O2 | 0.0663 (15) | 0.0377 (13) | 0.0743 (16) | −0.0010 (11) | 0.0403 (13) | 0.0039 (11) |
| O3 | 0.0630 (16) | 0.0488 (15) | 0.0686 (16) | −0.0126 (12) | −0.0008 (13) | 0.0054 (12) |
| O4 | 0.0587 (15) | 0.0523 (14) | 0.0544 (14) | −0.0080 (11) | 0.0015 (11) | 0.0059 (11) |
| O5 | 0.0508 (13) | 0.0329 (12) | 0.0712 (16) | 0.0012 (10) | 0.0228 (11) | −0.0047 (10) |
| O6 | 0.0595 (15) | 0.0344 (13) | 0.0714 (16) | −0.0049 (10) | 0.0123 (12) | 0.0102 (11) |
| C1 | 0.065 (2) | 0.063 (2) | 0.105 (3) | −0.0007 (19) | 0.055 (2) | −0.006 (2) |
| C2 | 0.0444 (17) | 0.0383 (17) | 0.0393 (16) | −0.0001 (13) | 0.0149 (13) | −0.0041 (12) |
| C3 | 0.0439 (16) | 0.0348 (15) | 0.0472 (17) | 0.0000 (13) | 0.0188 (13) | 0.0000 (12) |
| C4 | 0.0335 (15) | 0.0300 (14) | 0.0444 (16) | −0.0032 (12) | 0.0114 (12) | −0.0044 (12) |
| C5 | 0.0441 (19) | 0.075 (3) | 0.053 (2) | 0.0015 (18) | 0.0036 (16) | 0.0057 (18) |
| C6 | 0.0394 (16) | 0.0485 (19) | 0.0436 (17) | −0.0009 (14) | 0.0163 (14) | −0.0008 (14) |
| C7 | 0.0530 (19) | 0.0474 (19) | 0.0449 (17) | −0.0104 (15) | 0.0013 (15) | 0.0036 (15) |
| C8 | 0.0409 (16) | 0.0355 (16) | 0.0468 (17) | −0.0046 (13) | 0.0122 (14) | −0.0004 (13) |
| C9 | 0.050 (2) | 0.060 (2) | 0.075 (2) | 0.0021 (17) | 0.0360 (18) | 0.0016 (18) |
| C10 | 0.0316 (15) | 0.0415 (17) | 0.0423 (16) | 0.0022 (13) | 0.0072 (12) | −0.0005 (13) |
| C11 | 0.065 (2) | 0.0460 (19) | 0.0474 (19) | 0.0052 (16) | 0.0111 (16) | 0.0047 (15) |
| C12 | 0.0385 (15) | 0.0337 (16) | 0.0499 (17) | 0.0005 (12) | 0.0191 (13) | 0.0033 (13) |
| C13 | 0.0322 (14) | 0.0293 (14) | 0.0408 (15) | −0.0007 (11) | 0.0108 (12) | −0.0010 (11) |
| O1—C2 | 1.339 (4) | C5—H5B | 0.9600 |
| O1—C1 | 1.430 (4) | C5—H5C | 0.9600 |
| O2—C2 | 1.202 (4) | C6—C7 | 1.491 (4) |
| O3—C6 | 1.197 (4) | C7—C8 | 1.519 (4) |
| O4—C6 | 1.331 (4) | C7—H7A | 0.9700 |
| O4—C5 | 1.436 (4) | C7—H7B | 0.9700 |
| O5—C10 | 1.209 (4) | C8—C13 | 1.538 (4) |
| O6—C12 | 1.206 (4) | C8—H8A | 0.9700 |
| C1—H1A | 0.9600 | C8—H8B | 0.9700 |
| C1—H1B | 0.9600 | C9—C10 | 1.494 (4) |
| C1—H1C | 0.9600 | C9—H9A | 0.9600 |
| C2—C3 | 1.495 (4) | C9—H9B | 0.9600 |
| C3—C4 | 1.524 (4) | C9—H9C | 0.9600 |
| C3—H3A | 0.9700 | C10—C13 | 1.540 (4) |
| C3—H3B | 0.9700 | C11—C12 | 1.501 (5) |
| C4—C13 | 1.539 (4) | C11—H11A | 0.9600 |
| C4—H4A | 0.9700 | C11—H11B | 0.9600 |
| C4—H4B | 0.9700 | C11—H11C | 0.9600 |
| C5—H5A | 0.9600 | C12—C13 | 1.546 (4) |
| C2—O1—C1 | 116.4 (3) | C8—C7—H7A | 108.9 |
| C6—O4—C5 | 117.5 (3) | C6—C7—H7B | 108.9 |
| O1—C1—H1A | 109.5 | C8—C7—H7B | 108.9 |
| O1—C1—H1B | 109.5 | H7A—C7—H7B | 107.7 |
| H1A—C1—H1B | 109.5 | C7—C8—C13 | 113.8 (2) |
| O1—C1—H1C | 109.5 | C7—C8—H8A | 108.8 |
| H1A—C1—H1C | 109.5 | C13—C8—H8A | 108.8 |
| H1B—C1—H1C | 109.5 | C7—C8—H8B | 108.8 |
| O2—C2—O1 | 122.5 (3) | C13—C8—H8B | 108.8 |
| O2—C2—C3 | 125.8 (3) | H8A—C8—H8B | 107.7 |
| O1—C2—C3 | 111.8 (3) | C10—C9—H9A | 109.5 |
| C2—C3—C4 | 111.6 (2) | C10—C9—H9B | 109.5 |
| C2—C3—H3A | 109.3 | H9A—C9—H9B | 109.5 |
| C4—C3—H3A | 109.3 | C10—C9—H9C | 109.5 |
| C2—C3—H3B | 109.3 | H9A—C9—H9C | 109.5 |
| C4—C3—H3B | 109.3 | H9B—C9—H9C | 109.5 |
| H3A—C3—H3B | 108.0 | O5—C10—C9 | 120.6 (3) |
| C3—C4—C13 | 114.8 (2) | O5—C10—C13 | 121.5 (3) |
| C3—C4—H4A | 108.6 | C9—C10—C13 | 117.9 (3) |
| C13—C4—H4A | 108.6 | C12—C11—H11A | 109.5 |
| C3—C4—H4B | 108.6 | C12—C11—H11B | 109.5 |
| C13—C4—H4B | 108.6 | H11A—C11—H11B | 109.5 |
| H4A—C4—H4B | 107.5 | C12—C11—H11C | 109.5 |
| O4—C5—H5A | 109.5 | H11A—C11—H11C | 109.5 |
| O4—C5—H5B | 109.5 | H11B—C11—H11C | 109.5 |
| H5A—C5—H5B | 109.5 | O6—C12—C11 | 121.3 (3) |
| O4—C5—H5C | 109.5 | O6—C12—C13 | 121.1 (3) |
| H5A—C5—H5C | 109.5 | C11—C12—C13 | 117.5 (3) |
| H5B—C5—H5C | 109.5 | C8—C13—C4 | 113.4 (2) |
| O3—C6—O4 | 123.0 (3) | C8—C13—C10 | 108.4 (2) |
| O3—C6—C7 | 125.7 (3) | C4—C13—C10 | 108.9 (2) |
| O4—C6—C7 | 111.2 (3) | C8—C13—C12 | 109.4 (2) |
| C6—C7—C8 | 113.3 (3) | C4—C13—C12 | 109.2 (2) |
| C6—C7—H7A | 108.9 | C10—C13—C12 | 107.3 (2) |
| C1—O1—C2—O2 | −2.7 (5) | C3—C4—C13—C10 | 170.5 (2) |
| C1—O1—C2—C3 | 177.0 (3) | C3—C4—C13—C12 | 53.6 (3) |
| O2—C2—C3—C4 | −5.9 (4) | O5—C10—C13—C8 | −118.2 (3) |
| O1—C2—C3—C4 | 174.3 (3) | C9—C10—C13—C8 | 61.1 (3) |
| C2—C3—C4—C13 | 175.5 (2) | O5—C10—C13—C4 | 5.6 (4) |
| C5—O4—C6—O3 | 0.9 (5) | C9—C10—C13—C4 | −175.1 (3) |
| C5—O4—C6—C7 | −177.8 (3) | O5—C10—C13—C12 | 123.7 (3) |
| O3—C6—C7—C8 | 4.6 (5) | C9—C10—C13—C12 | −57.0 (3) |
| O4—C6—C7—C8 | −176.7 (3) | O6—C12—C13—C8 | 9.0 (4) |
| C6—C7—C8—C13 | −171.8 (3) | C11—C12—C13—C8 | −172.9 (3) |
| C7—C8—C13—C4 | −66.3 (3) | O6—C12—C13—C4 | −115.7 (3) |
| C7—C8—C13—C10 | 54.8 (3) | C11—C12—C13—C4 | 62.4 (3) |
| C7—C8—C13—C12 | 171.5 (3) | O6—C12—C13—C10 | 126.4 (3) |
| C3—C4—C13—C8 | −68.8 (3) | C11—C12—C13—C10 | −55.5 (3) |
| H··· | ||||
| C4—H4B···O5i | 0.97 | 2.58 | 3.418 (4) | 145 |
| C3—H3B···O2ii | 0.97 | 2.55 | 3.500 (4) | 165 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| C4—H4 | 0.97 | 2.58 | 3.418 (4) | 145 |
| C3—H3 | 0.97 | 2.55 | 3.500 (4) | 165 |
Symmetry codes: (i) ; (ii) .