Literature DB >> 21581781

2-Acetyl-pyridinium 3-amino-2-chloro-pyridinium tetra-chloridocobaltate(II).

Ariel Adamski1, Violetta Patroniak, Maciej Kubicki.   

Abstract

In the title complex, (C(5)n class="Chemical">H(6)ClN(2))(C(7)H(8)NO)[CoCl(4)], the Co(II) ions are tetra-hedrally coordinated. The crystal structure is built from hydrogen-bonded centrosymmetric tetra-mers of tetra-chloridocobaltate(II) dianions and 3-amino-2-chloro-pyridinium cations, additionally strengthened by significant π-π stacking of pyridinium rings [interplanar distance 3.389 (3) Å]. The tetra-mers are linked by N-H⋯Cl hydrogen bonds into chains; the second kind of cations, viz. 2-acetyl-pyridinium, are connected by N-H⋯Cl hydrogen bonds to both sides of the chain. The Co-Cl bond lengths in the dianion correlate with the number of hydrogen bonds accepted by the Cl atom. An intramolecular C-H⋯Cl interaction is also present.

Entities:  

Year:  2009        PMID: 21581781      PMCID: PMC2968359          DOI: 10.1107/S1600536809000713

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

There are only few examples of structures involving the ligands present in the title structure. For related structures, see: 2-acetyl­pyridine itself (Laurent, 1966 ▶) and its cation in perchlorate (Husak, 1996 ▶) and in the complex with n class="Species">tetra­phenyl­porphyrin-zinc(II) (Byrn et al., 1993 ▶), and a free base 3-amino-2-chloro­pyridine (Saha et al., 2006 ▶), and the latter as the dihydrogenphosphate (Hamed et al., 2007 ▶) and as the silver complexes (Tong et al., 2002 ▶; Li et al., 2002 ▶). For literature on the Schiff base complexes, see Häner & Hall (1999 ▶); Mukherjee et al. (2005 ▶); Radecka-Paryzek et al. (2005 ▶); Yam & Lo (1999 ▶).

Experimental

Crystal data

(C5H6ClN2)(C7H8n class="Chemical">NO)[CoCl4] M = 452.44 Triclinic, a = 7.3255 (5) Å b = 8.3188 (5) Å c = 16.2657 (11) Å α = 89.114 (5)° β = 82.806 (5)° γ = 64.145 (6)° V = 884.13 (10) Å3 Z = 2 Mo Kα radiation μ = 1.73 mm−1 T = 100 (1) K 0.4 × 0.15 × 0.1 mm

Data collection

Kuma KM-4-CCD four-circle diffractometer Absorption correction: multi-scan (CrysAlis n class="Disease">RED; Oxford Diffraction, 2007 ▶) T min = 0.616, T max = 0.841 10954 measured reflections 3798 independent reflections 3470 reflections with I > 2σ(I) R int = 0.019

Refinement

R[F 2 > 2σ(F 2)] = 0.031 wR(F 2) = 0.065 S = 1.24 3798 reflections 216 parameters H atoms treated by a mixture of independent and n class="Chemical">constrained refinement Δρmax = 0.70 e Å−3 Δρmin = −0.36 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2007 ▶); cell refinement: CrysAlis n class="Disease">RED (Oxford Diffraction, 2007 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: Stereochemical Workstation Operation Manual (Siemens, 1989 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809000713/lx2085sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809000713/lx2085Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
(C5H6ClN2)(C7H8NO)[CoCl4]Z = 2
Mr = 452.44F(000) = 454
Triclinic, P1Dx = 1.700 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.3255 (5) ÅCell parameters from 7316 reflections
b = 8.3188 (5) Åθ = 3–25°
c = 16.2657 (11) ŵ = 1.73 mm1
α = 89.114 (5)°T = 100 K
β = 82.806 (5)°Plate, blue
γ = 64.145 (6)°0.4 × 0.15 × 0.1 mm
V = 884.13 (10) Å3
Kuma KM-4-CCD four-circle diffractometer3798 independent reflections
Radiation source: fine-focus sealed tube3470 reflections with I > 2σ(I)
graphiteRint = 0.019
Detector resolution: 8.1929 pixels mm-1θmax = 27.0°, θmin = 2.7°
ω scansh = −9→9
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2007)k = −10→10
Tmin = 0.616, Tmax = 0.841l = −20→19
10954 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.031Hydrogen site location: difference Fourier map
wR(F2) = 0.065H atoms treated by a mixture of independent and constrained refinement
S = 1.24w = 1/[σ2(Fo2) + (0.0083P)2 + 1.4737P] where P = (Fo2 + 2Fc2)/3
3798 reflections(Δ/σ)max < 0.001
216 parametersΔρmax = 0.70 e Å3
0 restraintsΔρmin = −0.36 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Co10.88393 (5)0.59259 (4)0.24288 (2)0.01220 (9)
Cl11.00305 (9)0.37850 (8)0.33709 (4)0.01584 (13)
Cl20.70499 (9)0.51487 (8)0.15843 (4)0.01614 (13)
Cl31.15608 (9)0.60998 (8)0.16588 (4)0.01751 (13)
Cl40.66564 (10)0.86213 (8)0.30354 (4)0.01991 (14)
N1A0.5900 (3)1.1877 (3)−0.05439 (15)0.0177 (5)
H1A0.542 (5)1.229 (4)−0.098 (2)0.026 (9)*
C2A0.7364 (4)1.0189 (3)−0.06482 (16)0.0175 (5)
Cl2A0.82058 (10)0.92797 (9)−0.16337 (4)0.02218 (15)
C3A0.8134 (4)0.9213 (3)0.00390 (16)0.0161 (5)
N31A0.9566 (4)0.7490 (3)−0.00534 (16)0.0236 (5)
H31A1.011 (5)0.705 (4)−0.058 (2)0.033 (9)*
H31B1.015 (5)0.690 (4)0.042 (2)0.032 (9)*
C4A0.7311 (4)1.0089 (4)0.08237 (17)0.0186 (5)
H4A0.77980.94790.13070.022*
C5A0.5794 (4)1.1834 (4)0.08995 (17)0.0209 (6)
H5A0.52541.24080.14340.025*
C6A0.5065 (4)1.2742 (4)0.02109 (18)0.0198 (6)
H6A0.40141.39330.02590.024*
N1B0.7520 (3)0.5002 (3)0.51335 (13)0.0148 (4)
H1B0.844 (5)0.447 (4)0.470 (2)0.032 (9)*
C2B0.7401 (4)0.4099 (3)0.58207 (15)0.0148 (5)
C21B0.9013 (4)0.2182 (3)0.57886 (16)0.0162 (5)
O21B1.0417 (3)0.1707 (3)0.52259 (12)0.0222 (4)
C22B0.8761 (4)0.1020 (4)0.64563 (17)0.0210 (6)
H22A0.9764−0.02220.63200.029*
H22B0.73760.11020.65030.029*
H22C0.89780.14160.69850.029*
C3B0.5901 (4)0.4969 (4)0.64742 (16)0.0176 (5)
H3B0.57730.43560.69590.021*
C4B0.4563 (4)0.6782 (4)0.64097 (17)0.0201 (6)
H4B0.35300.74070.68570.024*
C5B0.4745 (4)0.7655 (4)0.56984 (17)0.0198 (6)
H5B0.38390.88780.56530.024*
C6B0.6263 (4)0.6729 (3)0.50503 (17)0.0179 (5)
H6B0.64100.73080.45560.022*
U11U22U33U12U13U23
Co10.01261 (16)0.01326 (16)0.01084 (17)−0.00584 (13)−0.00127 (12)0.00103 (13)
Cl10.0180 (3)0.0160 (3)0.0126 (3)−0.0066 (2)−0.0024 (2)0.0034 (2)
Cl20.0149 (3)0.0185 (3)0.0152 (3)−0.0069 (2)−0.0039 (2)−0.0007 (2)
Cl30.0151 (3)0.0224 (3)0.0162 (3)−0.0097 (2)−0.0007 (2)0.0032 (2)
Cl40.0213 (3)0.0151 (3)0.0190 (3)−0.0047 (2)0.0003 (2)−0.0023 (2)
N1A0.0163 (11)0.0158 (11)0.0217 (12)−0.0073 (9)−0.0041 (9)0.0036 (9)
C2A0.0176 (12)0.0193 (13)0.0167 (13)−0.0099 (10)0.0010 (10)0.0011 (10)
Cl2A0.0260 (3)0.0232 (3)0.0140 (3)−0.0083 (3)−0.0004 (2)0.0017 (2)
C3A0.0156 (12)0.0185 (13)0.0174 (13)−0.0105 (10)−0.0020 (10)0.0037 (10)
N31A0.0246 (12)0.0212 (12)0.0157 (12)−0.0018 (10)−0.0010 (10)0.0022 (10)
C4A0.0201 (13)0.0201 (13)0.0172 (13)−0.0106 (11)−0.0019 (10)0.0023 (11)
C5A0.0221 (13)0.0223 (14)0.0211 (14)−0.0132 (11)0.0012 (11)−0.0038 (11)
C6A0.0190 (13)0.0161 (13)0.0300 (15)−0.0122 (11)−0.0072 (11)0.0051 (11)
N1B0.0162 (10)0.0166 (11)0.0122 (10)−0.0077 (9)−0.0016 (8)−0.0002 (9)
C2B0.0160 (12)0.0197 (13)0.0131 (12)−0.0114 (10)−0.0038 (10)0.0004 (10)
C21B0.0184 (12)0.0193 (13)0.0140 (13)−0.0102 (10)−0.0051 (10)0.0014 (10)
O21B0.0212 (10)0.0225 (10)0.0173 (10)−0.0051 (8)−0.0007 (8)0.0025 (8)
C22B0.0244 (14)0.0222 (14)0.0183 (13)−0.0117 (11)−0.0048 (11)0.0063 (11)
C3B0.0177 (12)0.0256 (14)0.0138 (12)−0.0133 (11)−0.0021 (10)0.0009 (11)
C4B0.0167 (12)0.0237 (14)0.0195 (14)−0.0088 (11)0.0001 (10)−0.0066 (11)
C5B0.0196 (13)0.0175 (13)0.0231 (14)−0.0083 (11)−0.0046 (11)−0.0021 (11)
C6B0.0221 (13)0.0176 (13)0.0175 (13)−0.0112 (11)−0.0056 (10)0.0039 (10)
Co1—Cl42.2593 (7)N1B—C6B1.342 (3)
Co1—Cl12.2751 (7)N1B—C2B1.352 (3)
Co1—Cl32.2771 (7)N1B—H1B0.88 (3)
Co1—Cl22.2893 (7)C2B—C3B1.378 (4)
N1A—C2A1.341 (3)C2B—C21B1.512 (4)
N1A—C6A1.362 (4)C21B—O21B1.214 (3)
N1A—H1A0.84 (3)C21B—C22B1.490 (4)
C2A—C3A1.399 (4)C22B—H22A0.9800
C2A—Cl2A1.705 (3)C22B—H22B0.9800
C3A—N31A1.354 (3)C22B—H22C0.9800
C3A—C4A1.406 (4)C3B—C4B1.406 (4)
N31A—H31A0.90 (4)C3B—H3B0.9500
N31A—H31B0.96 (4)C4B—C5B1.379 (4)
C4A—C5A1.386 (4)C4B—H4B0.9500
C4A—H4A0.9500C5B—C6B1.388 (4)
C5A—C6A1.372 (4)C5B—H5B0.9500
C5A—H5A0.9500C6B—H6B0.9500
C6A—H6A0.9500
Cl4—Co1—Cl1112.35 (3)C6B—N1B—C2B123.6 (2)
Cl4—Co1—Cl3110.42 (3)C6B—N1B—H1B116 (2)
Cl1—Co1—Cl3108.54 (3)C2B—N1B—H1B121 (2)
Cl4—Co1—Cl2106.68 (3)N1B—C2B—C3B119.1 (2)
Cl1—Co1—Cl2109.10 (3)N1B—C2B—C21B114.6 (2)
Cl3—Co1—Cl2109.72 (3)C3B—C2B—C21B126.3 (2)
C2A—N1A—C6A123.7 (2)O21B—C21B—C22B124.9 (2)
C2A—N1A—H1A113 (2)O21B—C21B—C2B117.8 (2)
C6A—N1A—H1A123 (2)C22B—C21B—C2B117.3 (2)
N1A—C2A—C3A120.3 (2)C21B—C22B—H22A109.5
N1A—C2A—Cl2A118.0 (2)C21B—C22B—H22B109.5
C3A—C2A—Cl2A121.7 (2)H22A—C22B—H22B109.5
N31A—C3A—C2A121.0 (2)C21B—C22B—H22C109.5
N31A—C3A—C4A122.0 (2)H22A—C22B—H22C109.5
C2A—C3A—C4A116.9 (2)H22B—C22B—H22C109.5
C3A—N31A—H31A117 (2)C2B—C3B—C4B118.8 (2)
C3A—N31A—H31B119 (2)C2B—C3B—H3B120.6
H31A—N31A—H31B123 (3)C4B—C3B—H3B120.6
C5A—C4A—C3A120.7 (2)C5B—C4B—C3B120.2 (2)
C5A—C4A—H4A119.7C5B—C4B—H4B119.9
C3A—C4A—H4A119.7C3B—C4B—H4B119.9
C6A—C5A—C4A120.7 (3)C4B—C5B—C6B119.4 (2)
C6A—C5A—H5A119.6C4B—C5B—H5B120.3
C4A—C5A—H5A119.6C6B—C5B—H5B120.3
N1A—C6A—C5A117.7 (2)N1B—C6B—C5B118.9 (2)
N1A—C6A—H6A121.2N1B—C6B—H6B120.5
C5A—C6A—H6A121.2C5B—C6B—H6B120.5
C6A—N1A—C2A—C3A−0.5 (4)C6B—N1B—C2B—C21B−178.2 (2)
C6A—N1A—C2A—Cl2A178.5 (2)N1B—C2B—C21B—O21B10.7 (3)
N1A—C2A—C3A—N31A177.9 (2)C3B—C2B—C21B—O21B−168.3 (2)
Cl2A—C2A—C3A—N31A−1.0 (4)N1B—C2B—C21B—C22B−169.7 (2)
N1A—C2A—C3A—C4A−0.3 (4)C3B—C2B—C21B—C22B11.3 (4)
Cl2A—C2A—C3A—C4A−179.19 (19)N1B—C2B—C3B—C4B−1.1 (4)
N31A—C3A—C4A—C5A−177.7 (3)C21B—C2B—C3B—C4B177.9 (2)
C2A—C3A—C4A—C5A0.5 (4)C2B—C3B—C4B—C5B0.8 (4)
C3A—C4A—C5A—C6A0.0 (4)C3B—C4B—C5B—C6B−0.2 (4)
C2A—N1A—C6A—C5A1.0 (4)C2B—N1B—C6B—C5B−0.3 (4)
C4A—C5A—C6A—N1A−0.8 (4)C4B—C5B—C6B—N1B−0.1 (4)
C6B—N1B—C2B—C3B0.9 (4)
D—H···AD—HH···AD···AD—H···A
N1B—H1B···Cl10.88 (3)2.28 (4)3.126 (2)161 (3)
N1A—H1A···Cl2i0.84 (3)2.41 (3)3.127 (2)145 (3)
N31A—H31A···Cl2ii0.90 (4)2.51 (4)3.323 (3)151 (3)
N31A—H31B···Cl30.96 (4)2.33 (4)3.267 (3)167 (3)
C6B—H6B···Cl40.952.713.647 (3)171
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1B—H1B⋯Cl10.88 (3)2.28 (4)3.126 (2)161 (3)
N1A—H1A⋯Cl2i0.84 (3)2.41 (3)3.127 (2)145 (3)
N31A—H31A⋯Cl2ii0.90 (4)2.51 (4)3.323 (3)151 (3)
N31A—H31B⋯Cl30.96 (4)2.33 (4)3.267 (3)167 (3)
C6B—H6B⋯Cl40.952.713.647 (3)171

Symmetry codes: (i) ; (ii) .

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