Literature DB >> 21581777

fac-Aqua-dichloridotris(tetra-methyl-ene sulfoxide-κS)ruthenium(II).

Radhey S Srivastava, Carlos F Gonzales, Frank R Fronczek.   

Abstract

The title mol-ecule, [RuCl(2)(C(4)H(8)OS)(3)(H(2)O)], is the isomer with the two chloride ligands cis and the three S-coordinated tetra-methyl-ene sulfoxide ligands facial relative to the Ru(II) center. The Ru-Cl distances are 2.4161 (7) and 2.4317 (7) Å, the Ru-O distance is 2.1540 (19) Å, and the Ru-S distances are in the range 2.2254 (8)-2.2657 (7) Å, with the shortest being that trans to the aqua ligand. The coordinated water mol-ecule forms inter-molecular hydrogen bonds with Cl and sulfoxide O atoms.

Entities:  

Year:  2009        PMID: 21581777      PMCID: PMC2968404          DOI: 10.1107/S1600536809000439

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background literature, see: Aldinucci et al. (2007 ▶). For related structures, see: Srivastava & Fronczek (2003 ▶); Srivastava et al. (2004 ▶); Allen (2002 ▶). For hydrogen-bonding patterns, see: Etter (1990 ▶).

Experimental

Crystal data

[RuCl2(C4H8OS)3(H2O)] M = 502.48 Monoclinic, a = 14.302 (3) Å b = 7.7877 (15) Å c = 17.248 (3) Å β = 109.917 (9)° V = 1806.2 (6) Å3 Z = 4 Mo Kα radiation μ = 1.52 mm−1 T = 90.0 (5) K 0.22 × 0.10 × 0.05 mm

Data collection

Nonius KappaCCD diffractometer (with an Oxford Cryosystems Cryostream cooler) Absorption correction: multi-scan (SCALEPACK; Otwinowski & Minor, 1997 ▶) T min = 0.731, T max = 0.928 25916 measured reflections 5982 independent reflections 4610 reflections with I > 2σ(I) R int = 0.045

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.076 S = 1.02 5982 reflections 199 parameters H-atom parameters constrained Δρmax = 0.87 e Å−3 Δρmin = −1.12 e Å−3 Data collection: COLLECT (Nonius, 2000 ▶); cell refinement: SCALEPACK (Otwinowski & Minor, 1997 ▶); data reduction: DENZO (Otwinowski & Minor, 1997 ▶) and SCALEPACK; program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809000439/pv2128sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809000439/pv2128Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[RuCl2(C4H8OS)3(H2O)]F(000) = 1024
Mr = 502.48Dx = 1.848 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 6027 reflections
a = 14.302 (3) Åθ = 2.5–31.5°
b = 7.7877 (15) ŵ = 1.52 mm1
c = 17.248 (3) ÅT = 90 K
β = 109.917 (9)°Needle, colorless
V = 1806.2 (6) Å30.22 × 0.10 × 0.05 mm
Z = 4
Nonius KappaCCD diffractometer (with an Oxford Cryosystems Cryostream cooler)5982 independent reflections
Radiation source: fine-focus sealed tube4610 reflections with I > 2σ(I)
graphiteRint = 0.045
ω and φ scansθmax = 31.5°, θmin = 2.9°
Absorption correction: multi-scan (SCALEPACK; Otwinowski & Minor, 1997)h = −20→21
Tmin = 0.731, Tmax = 0.928k = −11→11
25916 measured reflectionsl = −25→25
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.037Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.076H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.0256P)2 + 2.7566P] where P = (Fo2 + 2Fc2)/3
5982 reflections(Δ/σ)max = 0.002
199 parametersΔρmax = 0.87 e Å3
0 restraintsΔρmin = −1.12 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Ru10.589322 (15)0.17421 (3)0.298795 (12)0.00590 (5)
Cl10.63294 (5)−0.00620 (8)0.41988 (4)0.01063 (12)
Cl20.59746 (5)−0.07251 (8)0.21491 (4)0.00956 (12)
S10.55748 (5)0.33080 (8)0.18270 (4)0.00718 (12)
S20.59211 (5)0.41572 (8)0.37280 (4)0.00785 (12)
S30.42982 (5)0.11754 (8)0.27675 (4)0.00811 (12)
O10.64973 (14)0.3915 (2)0.16851 (11)0.0112 (4)
O20.49707 (14)0.5110 (2)0.35546 (12)0.0125 (4)
O30.35604 (14)0.1775 (3)0.19762 (12)0.0133 (4)
O40.74739 (13)0.1973 (2)0.32611 (11)0.0094 (4)
H410.76970.10340.32540.014*
H420.77350.25810.30210.014*
C10.4799 (2)0.2324 (3)0.08568 (16)0.0117 (5)
H1A0.51960.21110.04950.014*
H1B0.45270.12160.09650.014*
C20.3955 (2)0.3583 (4)0.04466 (17)0.0142 (6)
H2A0.33530.32600.05730.017*
H2B0.37900.3561−0.01590.017*
C30.4301 (2)0.5380 (4)0.07805 (16)0.0129 (5)
H3A0.47940.58310.05450.016*
H3B0.37310.61830.06450.016*
C40.4770 (2)0.5151 (3)0.17114 (16)0.0109 (5)
H4A0.42560.49340.19640.013*
H4B0.51570.61810.19700.013*
C50.6859 (2)0.5663 (3)0.36345 (16)0.0108 (5)
H5A0.71410.52490.32180.013*
H5B0.65590.68080.34630.013*
C60.7667 (2)0.5771 (4)0.44766 (17)0.0152 (6)
H6A0.80070.68970.45480.018*
H6B0.81670.48540.45380.018*
C70.7149 (2)0.5548 (4)0.51139 (17)0.0145 (6)
H7A0.76440.53660.56710.017*
H7B0.67480.65760.51280.017*
C80.6484 (2)0.3978 (3)0.48391 (16)0.0110 (5)
H8A0.59670.39640.51010.013*
H8B0.68810.29110.49900.013*
C90.3821 (2)0.1780 (4)0.35774 (17)0.0132 (5)
H9A0.43590.17910.41210.016*
H9B0.35070.29280.34710.016*
C100.3059 (2)0.0401 (4)0.35450 (18)0.0148 (6)
H10A0.24620.05300.30460.018*
H10B0.28560.04550.40390.018*
C110.3595 (2)−0.1292 (4)0.35214 (18)0.0149 (6)
H11A0.4113−0.15160.40630.018*
H11B0.3117−0.22580.33900.018*
C120.4068 (2)−0.1113 (3)0.28551 (18)0.0119 (5)
H12A0.3614−0.15620.23230.014*
H12B0.4699−0.17640.30100.014*
U11U22U33U12U13U23
Ru10.00693 (9)0.00402 (9)0.00659 (9)0.00017 (7)0.00210 (7)0.00032 (7)
Cl10.0146 (3)0.0069 (3)0.0095 (3)0.0008 (2)0.0030 (2)0.0025 (2)
Cl20.0109 (3)0.0061 (3)0.0119 (3)0.0004 (2)0.0042 (2)−0.0016 (2)
S10.0081 (3)0.0058 (3)0.0071 (3)−0.0008 (2)0.0020 (2)0.0000 (2)
S20.0099 (3)0.0056 (3)0.0077 (3)0.0003 (2)0.0026 (2)0.0005 (2)
S30.0086 (3)0.0069 (3)0.0087 (3)0.0000 (2)0.0028 (2)0.0008 (2)
O10.0116 (9)0.0101 (9)0.0133 (9)−0.0033 (7)0.0060 (8)0.0002 (7)
O20.0117 (9)0.0097 (9)0.0171 (10)0.0036 (7)0.0060 (8)0.0003 (8)
O30.0093 (9)0.0158 (9)0.0127 (9)−0.0009 (8)0.0009 (7)0.0055 (8)
O40.0108 (9)0.0049 (8)0.0132 (9)−0.0012 (7)0.0049 (7)−0.0001 (7)
C10.0127 (13)0.0110 (12)0.0102 (12)−0.0029 (10)0.0024 (10)−0.0015 (10)
C20.0131 (13)0.0156 (14)0.0110 (13)−0.0005 (10)0.0005 (10)0.0025 (10)
C30.0146 (13)0.0125 (12)0.0113 (13)0.0028 (11)0.0038 (10)0.0071 (10)
C40.0115 (12)0.0086 (12)0.0121 (13)0.0040 (10)0.0034 (10)0.0024 (10)
C50.0143 (13)0.0061 (11)0.0123 (12)−0.0014 (10)0.0052 (10)0.0009 (10)
C60.0160 (14)0.0133 (13)0.0135 (13)−0.0039 (11)0.0014 (11)−0.0030 (11)
C70.0197 (15)0.0130 (13)0.0083 (12)−0.0027 (11)0.0014 (11)−0.0033 (10)
C80.0161 (13)0.0092 (12)0.0080 (12)0.0007 (10)0.0044 (10)0.0006 (10)
C90.0135 (13)0.0131 (12)0.0159 (13)−0.0003 (11)0.0086 (11)−0.0031 (11)
C100.0138 (13)0.0178 (14)0.0156 (14)−0.0047 (11)0.0087 (11)0.0012 (11)
C110.0180 (14)0.0121 (12)0.0156 (14)−0.0055 (11)0.0068 (11)0.0024 (11)
C120.0107 (12)0.0063 (11)0.0199 (14)−0.0030 (10)0.0067 (11)0.0009 (10)
Ru1—O42.1540 (19)C3—H3B0.9900
Ru1—S32.2254 (8)C4—H4A0.9900
Ru1—S12.2546 (7)C4—H4B0.9900
Ru1—S22.2657 (7)C5—C61.519 (4)
Ru1—Cl12.4161 (7)C5—H5A0.9900
Ru1—Cl22.4317 (7)C5—H5B0.9900
S1—O11.498 (2)C6—C71.531 (4)
S1—C41.807 (3)C6—H6A0.9900
S1—C11.831 (3)C6—H6B0.9900
S2—O21.487 (2)C7—C81.521 (4)
S2—C81.814 (3)C7—H7A0.9900
S2—C51.830 (3)C7—H7B0.9900
S3—O31.487 (2)C8—H8A0.9900
S3—C91.813 (3)C8—H8B0.9900
S3—C121.828 (3)C9—C101.517 (4)
O4—H410.8000C9—H9A0.9900
O4—H420.8000C9—H9B0.9900
C1—C21.529 (4)C10—C111.532 (4)
C1—H1A0.9900C10—H10A0.9900
C1—H1B0.9900C10—H10B0.9900
C2—C31.530 (4)C11—C121.525 (4)
C2—H2A0.9900C11—H11A0.9900
C2—H2B0.9900C11—H11B0.9900
C3—C41.525 (4)C12—H12A0.9900
C3—H3A0.9900C12—H12B0.9900
O4—Ru1—S3172.92 (5)C3—C4—S1104.15 (18)
O4—Ru1—S191.63 (5)C3—C4—H4A110.9
S3—Ru1—S194.04 (3)S1—C4—H4A110.9
O4—Ru1—S289.52 (5)C3—C4—H4B110.9
S3—Ru1—S294.66 (3)S1—C4—H4B110.9
S1—Ru1—S290.62 (3)H4A—C4—H4B108.9
O4—Ru1—Cl185.23 (5)C6—C5—S2107.04 (18)
S3—Ru1—Cl188.86 (3)C6—C5—H5A110.3
S1—Ru1—Cl1175.45 (2)S2—C5—H5A110.3
S2—Ru1—Cl192.63 (3)C6—C5—H5B110.3
O4—Ru1—Cl286.37 (5)S2—C5—H5B110.3
S3—Ru1—Cl289.75 (2)H5A—C5—H5B108.6
S1—Ru1—Cl286.28 (3)C5—C6—C7106.5 (2)
S2—Ru1—Cl2174.78 (2)C5—C6—H6A110.4
Cl1—Ru1—Cl290.24 (3)C7—C6—H6A110.4
O1—S1—C4107.13 (12)C5—C6—H6B110.4
O1—S1—C1106.01 (12)C7—C6—H6B110.4
C4—S1—C193.82 (12)H6A—C6—H6B108.6
O1—S1—Ru1113.14 (8)C8—C7—C6105.8 (2)
C4—S1—Ru1117.12 (9)C8—C7—H7A110.6
C1—S1—Ru1117.49 (9)C6—C7—H7A110.6
O2—S2—C8107.31 (12)C8—C7—H7B110.6
O2—S2—C5108.06 (12)C6—C7—H7B110.6
C8—S2—C593.85 (12)H7A—C7—H7B108.7
O2—S2—Ru1117.48 (8)C7—C8—S2105.84 (18)
C8—S2—Ru1116.59 (9)C7—C8—H8A110.6
C5—S2—Ru1110.80 (9)S2—C8—H8A110.6
O3—S3—C9106.85 (13)C7—C8—H8B110.6
O3—S3—C12106.88 (12)S2—C8—H8B110.6
C9—S3—C1293.64 (13)H8A—C8—H8B108.7
O3—S3—Ru1117.39 (8)C10—C9—S3104.01 (19)
C9—S3—Ru1116.73 (10)C10—C9—H9A111.0
C12—S3—Ru1112.49 (9)S3—C9—H9A111.0
Ru1—O4—H41108.3C10—C9—H9B111.0
Ru1—O4—H42125.1S3—C9—H9B111.0
H41—O4—H42105.9H9A—C9—H9B109.0
C2—C1—S1106.96 (18)C9—C10—C11104.5 (2)
C2—C1—H1A110.3C9—C10—H10A110.9
S1—C1—H1A110.3C11—C10—H10A110.9
C2—C1—H1B110.3C9—C10—H10B110.9
S1—C1—H1B110.3C11—C10—H10B110.9
H1A—C1—H1B108.6H10A—C10—H10B108.9
C1—C2—C3108.0 (2)C12—C11—C10107.2 (2)
C1—C2—H2A110.1C12—C11—H11A110.3
C3—C2—H2A110.1C10—C11—H11A110.3
C1—C2—H2B110.1C12—C11—H11B110.3
C3—C2—H2B110.1C10—C11—H11B110.3
H2A—C2—H2B108.4H11A—C11—H11B108.5
C4—C3—C2105.0 (2)C11—C12—S3106.86 (19)
C4—C3—H3A110.7C11—C12—H12A110.4
C2—C3—H3A110.7S3—C12—H12A110.4
C4—C3—H3B110.7C11—C12—H12B110.4
C2—C3—H3B110.7S3—C12—H12B110.4
H3A—C3—H3B108.8H12A—C12—H12B108.6
O4—Ru1—S1—O1−0.88 (10)S1—Ru1—S3—C12129.51 (10)
S3—Ru1—S1—O1−176.63 (9)S2—Ru1—S3—C12−139.54 (10)
S2—Ru1—S1—O188.66 (9)Cl1—Ru1—S3—C12−46.99 (10)
Cl2—Ru1—S1—O1−87.14 (9)Cl2—Ru1—S3—C1243.26 (10)
O4—Ru1—S1—C4−126.24 (11)O1—S1—C1—C2−105.28 (19)
S3—Ru1—S1—C458.01 (11)C4—S1—C1—C23.8 (2)
S2—Ru1—S1—C4−36.70 (11)Ru1—S1—C1—C2127.11 (16)
Cl2—Ru1—S1—C4147.50 (11)S1—C1—C2—C323.5 (3)
O4—Ru1—S1—C1123.22 (11)C1—C2—C3—C4−46.0 (3)
S3—Ru1—S1—C1−52.53 (11)C2—C3—C4—S147.2 (2)
S2—Ru1—S1—C1−147.24 (10)O1—S1—C4—C378.5 (2)
Cl2—Ru1—S1—C136.96 (10)C1—S1—C4—C3−29.5 (2)
O4—Ru1—S2—O2158.55 (10)Ru1—S1—C4—C3−153.17 (15)
S3—Ru1—S2—O2−27.18 (9)O2—S2—C5—C6117.47 (19)
S1—Ru1—S2—O266.92 (9)C8—S2—C5—C67.9 (2)
Cl1—Ru1—S2—O2−116.25 (9)Ru1—S2—C5—C6−112.51 (17)
O4—Ru1—S2—C8−72.00 (12)S2—C5—C6—C7−33.1 (3)
S3—Ru1—S2—C8102.28 (11)C5—C6—C7—C848.6 (3)
S1—Ru1—S2—C8−163.62 (11)C6—C7—C8—S2−41.6 (3)
Cl1—Ru1—S2—C813.20 (11)O2—S2—C8—C7−90.7 (2)
O4—Ru1—S2—C533.70 (11)C5—S2—C8—C719.5 (2)
S3—Ru1—S2—C5−152.03 (9)Ru1—S2—C8—C7135.11 (16)
S1—Ru1—S2—C5−57.93 (10)O3—S3—C9—C1080.2 (2)
Cl1—Ru1—S2—C5118.90 (10)C12—S3—C9—C10−28.6 (2)
S1—Ru1—S3—O34.88 (10)Ru1—S3—C9—C10−146.10 (16)
S2—Ru1—S3—O395.83 (10)S3—C9—C10—C1148.1 (2)
Cl1—Ru1—S3—O3−171.62 (10)C9—C10—C11—C12−48.9 (3)
Cl2—Ru1—S3—O3−81.37 (10)C10—C11—C12—S326.8 (3)
S1—Ru1—S3—C9−123.92 (11)O3—S3—C12—C11−107.7 (2)
S2—Ru1—S3—C9−32.96 (11)C9—S3—C12—C111.2 (2)
Cl1—Ru1—S3—C959.59 (11)Ru1—S3—C12—C11122.10 (17)
Cl2—Ru1—S3—C9149.83 (11)
D—H···AD—HH···AD···AD—H···A
O4—H41···O1i0.801.992.785 (3)169
O4—H42···Cl2ii0.802.373.116 (2)156
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O4—H41⋯O1i0.801.992.785 (3)169
O4—H42⋯Cl2ii0.802.373.116 (2)156

Symmetry codes: (i) ; (ii) .

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