Literature DB >> 21581764

Bis(6-meth-oxy-2-{[tris-(hydroxy-meth-yl)-meth-yl]-imino-meth-yl}phenolato)-copper(II) dihydrate.

Xiutang Zhang, Peihai Wei, Jianmin Dou, Bin Li, Bo Hu.   

Abstract

In the title compound, [Cu(C(12)H(16)NO(5))(2)]·2H(2)O, the Cu(II) ion adopts a trans-CuN(2)O(4) octa-hedral geometry arising from two N,O,O'-tridentate 6-meth-oxy-2-{[tris-(hydroxy-meth-yl)meth-yl]-imino-meth-yl}phenolate ligands. The Jahn-Teller distortion of the copper centre is unusally small. In the crystal structure, O-H⋯O hydrogen bonds, some of which are bifurcated, link the component species.

Entities:  

Year:  2009        PMID: 21581764      PMCID: PMC2968260          DOI: 10.1107/S1600536808043948

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the ligand synthesis, see: Wang et al. (2007 ▶). For background on Schiff base complexes, see: Ward (2007 ▶).

Experimental

Crystal data

[Cu(C12H16NO5)2]·2H2O M = 608.09 Monoclinic, a = 11.9421 (9) Å b = 11.0238 (9) Å c = 20.6706 (17) Å β = 97.462 (1)° V = 2698.2 (4) Å3 Z = 4 Mo Kα radiation μ = 0.88 mm−1 T = 293 (2) K 0.12 × 0.10 × 0.08 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.902, T max = 0.933 13183 measured reflections 4912 independent reflections 4397 reflections with I > 2σ(I) R int = 0.061

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.117 S = 1.01 4912 reflections 352 parameters 8 restraints H-atom parameters constrained Δρmax = 0.47 e Å−3 Δρmin = −0.48 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT-Plus (Bruker, 2001 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808043948/hb2887sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808043948/hb2887Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu(C12H16NO5)2]·2H2OF(000) = 1276
Mr = 608.09Dx = 1.497 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 4912 reflections
a = 11.9421 (9) Åθ = 2.1–25.5°
b = 11.0238 (9) ŵ = 0.88 mm1
c = 20.6706 (17) ÅT = 293 K
β = 97.462 (1)°Block, blue
V = 2698.2 (4) Å30.12 × 0.10 × 0.08 mm
Z = 4
Bruker APEXII CCD diffractometer4912 independent reflections
Radiation source: fine-focus sealed tube4397 reflections with I > 2σ(I)
graphiteRint = 0.061
ω scansθmax = 25.5°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 2001)h = −14→11
Tmin = 0.902, Tmax = 0.933k = −13→13
13183 measured reflectionsl = −25→21
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.041Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.117H-atom parameters constrained
S = 1.01w = 1/[σ2(Fo2) + (0.076P)2 + 1.4852P] where P = (Fo2 + 2Fc2)/3
4912 reflections(Δ/σ)max = 0.010
352 parametersΔρmax = 0.47 e Å3
8 restraintsΔρmin = −0.48 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cu10.76750 (2)0.15964 (2)0.742179 (13)0.02060 (12)
C10.8354 (4)0.4629 (4)0.52078 (18)0.0604 (10)
H1A0.90900.49800.53160.091*
H1B0.78470.52260.49970.091*
H1C0.84000.39530.49190.091*
C20.6893 (2)0.3686 (2)0.57268 (13)0.0304 (6)
C30.6096 (3)0.3782 (3)0.51893 (14)0.0448 (8)
H30.62570.42350.48330.054*
C40.5048 (3)0.3213 (3)0.51666 (16)0.0490 (9)
H40.45040.33030.48050.074*
C50.4835 (3)0.2521 (3)0.56846 (14)0.0386 (7)
H50.41410.21320.56680.058*
C60.5636 (2)0.2380 (2)0.62432 (12)0.0250 (5)
C70.6687 (2)0.3017 (2)0.62939 (11)0.0212 (5)
C80.5359 (2)0.1518 (2)0.67278 (13)0.0245 (5)
H80.46200.12300.66790.029*
C90.5630 (2)0.0167 (2)0.76438 (12)0.0241 (5)
C100.4561 (2)−0.0514 (2)0.73731 (14)0.0328 (6)
H10A0.4384−0.11110.76890.039*
H10B0.39350.00520.73010.039*
C110.5411 (2)0.0769 (3)0.82836 (14)0.0348 (6)
H11A0.52170.01570.85870.042*
H11B0.60880.11840.84800.042*
C120.6611 (2)−0.0728 (2)0.77953 (13)0.0290 (5)
H12A0.6453−0.12870.81350.035*
H12B0.6706−0.11950.74080.035*
C130.6631 (3)0.4397 (3)0.97678 (15)0.0459 (8)
H13A0.58410.45850.96840.069*
H13B0.70580.51360.98270.069*
H13C0.67730.39121.01560.069*
C140.8076 (2)0.3405 (2)0.92680 (12)0.0286 (6)
C150.8870 (3)0.3615 (3)0.97939 (13)0.0369 (6)
H150.86640.40061.01590.044*
C160.9992 (3)0.3245 (3)0.97888 (13)0.0362 (6)
H161.05290.33811.01490.043*
C171.0282 (2)0.2683 (2)0.92462 (12)0.0290 (5)
H171.10270.24460.92400.035*
C180.9483 (2)0.2451 (2)0.86945 (11)0.0211 (5)
C190.8334 (2)0.2797 (2)0.86871 (11)0.0209 (5)
C200.9936 (2)0.1931 (2)0.81378 (11)0.0207 (5)
H201.07150.18240.81800.025*
C210.9988 (2)0.1161 (2)0.70679 (11)0.0205 (5)
C221.1144 (2)0.0571 (2)0.72962 (12)0.0261 (5)
H22A1.14340.01900.69290.031*
H22B1.16790.11860.74730.031*
C231.0162 (2)0.2241 (2)0.66108 (11)0.0254 (5)
H23A1.06290.19800.62870.031*
H23B0.94360.24870.63830.031*
C240.9245 (2)0.0216 (2)0.66761 (12)0.0241 (5)
H24A0.95090.00870.62570.029*
H24B0.9288−0.05490.69090.029*
N10.60220 (16)0.11103 (17)0.72146 (10)0.0209 (4)
N20.93778 (16)0.16042 (16)0.75959 (9)0.0176 (4)
O10.79480 (18)0.4224 (2)0.57864 (10)0.0417 (5)
O20.74271 (14)0.30303 (15)0.68132 (8)0.0215 (3)
O30.76136 (14)−0.00642 (16)0.80055 (9)0.0287 (4)
H3A0.8136−0.05410.80320.043*
O40.46929 (17)−0.11041 (18)0.67767 (11)0.0403 (5)
H4A0.4108−0.14620.66400.060*
O50.4506 (2)0.16184 (19)0.81536 (13)0.0504 (6)
H5A0.43880.19420.84960.076*
O60.69604 (17)0.3742 (2)0.92296 (9)0.0424 (5)
O70.75320 (14)0.26443 (15)0.82097 (8)0.0237 (4)
O80.81044 (14)0.06366 (16)0.65805 (8)0.0279 (4)
H8A0.76760.01080.64330.042*
O91.10148 (16)−0.03065 (18)0.77788 (10)0.0378 (5)
H91.1627−0.06220.79010.057*
O101.06809 (16)0.32536 (16)0.69565 (9)0.0316 (4)
H101.02800.34890.72250.047*
O1W0.6645 (2)0.8968 (2)0.60223 (11)0.0496 (6)
H1W0.68720.82340.60270.074*
H2W0.60380.89850.61970.074*
O2W0.2699 (2)0.1555 (2)0.87731 (13)0.0553 (6)
H3W0.24130.08890.88850.083*
H4W0.32530.13870.85650.083*
U11U22U33U12U13U23
Cu10.02012 (18)0.01953 (18)0.02172 (18)−0.00072 (10)0.00112 (12)−0.00073 (10)
C10.086 (3)0.052 (2)0.051 (2)−0.0176 (19)0.0366 (19)0.0000 (16)
C20.0429 (15)0.0226 (12)0.0255 (13)−0.0034 (11)0.0034 (11)0.0012 (10)
C30.069 (2)0.0355 (16)0.0269 (14)−0.0041 (15)−0.0042 (14)0.0095 (12)
C40.062 (2)0.0405 (17)0.0370 (17)−0.0055 (15)−0.0241 (15)0.0080 (13)
C50.0390 (15)0.0282 (14)0.0432 (16)−0.0034 (12)−0.0149 (13)0.0016 (12)
C60.0266 (12)0.0197 (12)0.0268 (12)0.0017 (10)−0.0039 (10)−0.0009 (9)
C70.0263 (12)0.0148 (10)0.0220 (11)−0.0004 (9)0.0015 (9)−0.0013 (9)
C80.0208 (12)0.0193 (12)0.0322 (13)−0.0017 (9)−0.0008 (10)−0.0027 (9)
C90.0240 (12)0.0182 (11)0.0307 (12)−0.0052 (10)0.0059 (9)0.0033 (10)
C100.0236 (13)0.0249 (13)0.0496 (16)−0.0065 (10)0.0040 (11)0.0050 (12)
C110.0392 (15)0.0314 (14)0.0372 (15)−0.0034 (12)0.0180 (12)0.0028 (12)
C120.0283 (13)0.0195 (12)0.0387 (14)−0.0024 (10)0.0024 (11)0.0053 (10)
C130.0513 (18)0.0533 (19)0.0356 (15)0.0175 (15)0.0151 (13)−0.0120 (14)
C140.0338 (14)0.0300 (14)0.0223 (12)0.0064 (11)0.0047 (10)−0.0028 (10)
C150.0461 (17)0.0422 (16)0.0221 (13)0.0031 (13)0.0032 (12)−0.0104 (11)
C160.0391 (16)0.0463 (17)0.0207 (13)−0.0032 (13)−0.0056 (11)−0.0057 (11)
C170.0278 (13)0.0338 (14)0.0240 (12)0.0004 (11)−0.0019 (10)0.0005 (10)
C180.0243 (12)0.0198 (11)0.0193 (11)−0.0007 (9)0.0028 (9)0.0002 (9)
C190.0280 (12)0.0176 (11)0.0168 (10)−0.0012 (9)0.0016 (9)0.0009 (9)
C200.0192 (11)0.0184 (11)0.0237 (11)−0.0006 (9)0.0002 (9)0.0008 (9)
C210.0219 (11)0.0188 (11)0.0213 (11)−0.0001 (9)0.0044 (9)−0.0028 (9)
C220.0234 (12)0.0234 (12)0.0324 (13)0.0041 (10)0.0065 (10)−0.0009 (10)
C230.0303 (13)0.0243 (12)0.0230 (11)−0.0016 (10)0.0082 (10)0.0010 (9)
C240.0275 (12)0.0187 (11)0.0257 (12)0.0003 (10)0.0022 (9)−0.0062 (9)
N10.0182 (9)0.0171 (9)0.0274 (10)−0.0011 (8)0.0031 (8)−0.0003 (8)
N20.0189 (9)0.0155 (9)0.0189 (9)0.0008 (7)0.0040 (7)0.0006 (7)
O10.0490 (12)0.0433 (12)0.0344 (10)−0.0155 (10)0.0118 (9)0.0073 (9)
O20.0230 (8)0.0178 (8)0.0226 (8)−0.0040 (7)−0.0009 (6)0.0020 (6)
O30.0240 (9)0.0226 (9)0.0384 (10)0.0017 (7)−0.0004 (7)0.0041 (7)
O40.0328 (10)0.0305 (10)0.0542 (13)−0.0085 (8)−0.0070 (9)−0.0069 (9)
O50.0451 (13)0.0364 (12)0.0763 (17)0.0023 (9)0.0325 (12)−0.0080 (11)
O60.0365 (11)0.0621 (14)0.0288 (10)0.0173 (10)0.0040 (8)−0.0155 (9)
O70.0216 (8)0.0273 (9)0.0217 (8)0.0019 (7)0.0005 (7)−0.0058 (7)
O80.0248 (9)0.0262 (9)0.0313 (9)−0.0020 (7)−0.0019 (7)−0.0107 (7)
O90.0278 (10)0.0307 (10)0.0543 (12)0.0112 (8)0.0035 (9)0.0136 (9)
O100.0318 (10)0.0247 (9)0.0398 (11)−0.0078 (7)0.0103 (8)−0.0018 (8)
O1W0.0575 (14)0.0423 (13)0.0482 (13)−0.0186 (11)0.0043 (10)−0.0024 (10)
O2W0.0421 (13)0.0466 (14)0.0814 (18)0.0021 (10)0.0241 (12)−0.0010 (12)
Cu1—N12.0367 (19)C13—H13B0.9600
Cu1—N22.0185 (19)C13—H13C0.9600
Cu1—O22.0180 (16)C14—C151.366 (4)
Cu1—O32.1989 (18)C14—O61.376 (3)
Cu1—O72.0220 (16)C14—C191.443 (3)
Cu1—O82.1537 (17)C15—C161.401 (4)
C1—O11.419 (4)C15—H150.9300
C1—H1A0.9600C16—C171.365 (4)
C1—H1B0.9600C16—H160.9300
C1—H1C0.9600C17—C181.412 (3)
C2—C31.370 (4)C17—H170.9300
C2—O11.383 (3)C18—C191.422 (3)
C2—C71.433 (4)C18—C201.452 (3)
C3—C41.396 (5)C19—O71.294 (3)
C3—H30.9300C20—N21.279 (3)
C4—C51.365 (5)C20—H200.9300
C4—H40.9300C21—N21.472 (3)
C5—C61.409 (4)C21—C241.530 (3)
C5—H50.9300C21—C221.544 (3)
C6—C71.430 (3)C21—C231.551 (3)
C6—C81.450 (4)C22—O91.412 (3)
C7—O21.299 (3)C22—H22A0.9700
C8—N11.278 (3)C22—H22B0.9700
C8—H80.9300C23—O101.423 (3)
C9—N11.481 (3)C23—H23A0.9700
C9—C101.524 (3)C23—H23B0.9700
C9—C121.533 (4)C24—O81.428 (3)
C9—C111.532 (4)C24—H24A0.9700
C10—O41.421 (4)C24—H24B0.9700
C10—H10A0.9700O3—H3A0.8115
C10—H10B0.9700O4—H4A0.8200
C11—O51.428 (4)O5—H5A0.8200
C11—H11A0.9700O8—H8A0.8085
C11—H11B0.9700O9—H90.8200
C12—O31.422 (3)O10—H100.8200
C12—H12A0.9700O1W—H1W0.8520
C12—H12B0.9700O1W—H2W0.8511
C13—O61.424 (3)O2W—H3W0.8541
C13—H13A0.9600O2W—H4W0.8538
O2—Cu1—N299.83 (7)H13A—C13—H13C109.5
O2—Cu1—O791.93 (7)H13B—C13—H13C109.5
N2—Cu1—O792.43 (7)C15—C14—O6124.6 (2)
O2—Cu1—N190.88 (7)C15—C14—C19122.7 (2)
N2—Cu1—N1164.82 (7)O6—C14—C19112.8 (2)
O7—Cu1—N197.97 (7)C14—C15—C16120.7 (2)
O2—Cu1—O884.98 (7)C14—C15—H15119.7
N2—Cu1—O878.82 (7)C16—C15—H15119.7
O7—Cu1—O8170.05 (7)C17—C16—C15118.9 (2)
N1—Cu1—O891.54 (7)C17—C16—H16120.6
O2—Cu1—O3168.97 (6)C15—C16—H16120.6
N2—Cu1—O390.59 (7)C16—C17—C18121.9 (2)
O7—Cu1—O391.22 (7)C16—C17—H17119.0
N1—Cu1—O378.22 (7)C18—C17—H17119.0
O8—Cu1—O393.58 (7)C17—C18—C19120.7 (2)
O1—C1—H1A109.5C17—C18—C20115.4 (2)
O1—C1—H1B109.5C19—C18—C20123.8 (2)
H1A—C1—H1B109.5O7—C19—C18126.2 (2)
O1—C1—H1C109.5O7—C19—C14118.6 (2)
H1A—C1—H1C109.5C18—C19—C14115.2 (2)
H1B—C1—H1C109.5N2—C20—C18126.8 (2)
C3—C2—O1124.6 (3)N2—C20—H20116.6
C3—C2—C7121.9 (3)C18—C20—H20116.6
O1—C2—C7113.5 (2)N2—C21—C24108.05 (19)
C2—C3—C4121.2 (3)N2—C21—C22114.98 (19)
C2—C3—H3119.4C24—C21—C22108.01 (19)
C4—C3—H3119.4N2—C21—C23108.37 (18)
C5—C4—C3118.9 (3)C24—C21—C23108.33 (19)
C5—C4—H4120.6C22—C21—C23108.92 (19)
C3—C4—H4120.6O9—C22—C21109.19 (19)
C4—C5—C6121.9 (3)O9—C22—H22A109.8
C4—C5—H5119.0C21—C22—H22A109.8
C6—C5—H5119.1O9—C22—H22B109.8
C5—C6—C7120.1 (2)C21—C22—H22B109.8
C5—C6—C8116.5 (2)H22A—C22—H22B108.3
C7—C6—C8123.3 (2)O10—C23—C21112.36 (19)
O2—C7—C6124.2 (2)O10—C23—H23A109.1
O2—C7—C2120.0 (2)C21—C23—H23A109.1
C6—C7—C2115.8 (2)O10—C23—H23B109.1
N1—C8—C6126.9 (2)C21—C23—H23B109.1
N1—C8—H8116.6H23A—C23—H23B107.9
C6—C8—H8116.6O8—C24—C21109.23 (18)
N1—C9—C10116.2 (2)O8—C24—H24A109.8
N1—C9—C12106.37 (19)C21—C24—H24A109.8
C10—C9—C12109.9 (2)O8—C24—H24B109.8
N1—C9—C11108.37 (19)C21—C24—H24B109.8
C10—C9—C11107.6 (2)H24A—C24—H24B108.3
C12—C9—C11108.3 (2)C8—N1—C9120.4 (2)
O4—C10—C9111.2 (2)C8—N1—Cu1123.88 (17)
O4—C10—H10A109.4C9—N1—Cu1115.57 (15)
C9—C10—H10A109.4C20—N2—C21119.4 (2)
O4—C10—H10B109.4C20—N2—Cu1123.80 (16)
C9—C10—H10B109.4C21—N2—Cu1116.77 (14)
H10A—C10—H10B108.0C2—O1—C1117.8 (2)
O5—C11—C9109.3 (2)C7—O2—Cu1122.38 (14)
O5—C11—H11A109.8C12—O3—Cu1110.35 (14)
C9—C11—H11A109.8C12—O3—H3A107.2
O5—C11—H11B109.8Cu1—O3—H3A119.7
C9—C11—H11B109.8C10—O4—H4A109.5
H11A—C11—H11B108.3C11—O5—H5A109.5
O3—C12—C9108.8 (2)C14—O6—C13117.1 (2)
O3—C12—H12A109.9C19—O7—Cu1123.85 (15)
C9—C12—H12A109.9C24—O8—Cu1111.75 (13)
O3—C12—H12B109.9C24—O8—H8A111.3
C9—C12—H12B109.9Cu1—O8—H8A117.0
H12A—C12—H12B108.3C22—O9—H9109.5
O6—C13—H13A109.5C23—O10—H10109.5
O6—C13—H13B109.5H1W—O1W—H2W107.6
H13A—C13—H13B109.5H3W—O2W—H4W108.2
O6—C13—H13C109.5
D—H···AD—HH···AD···AD—H···A
O3—H3A···O10i0.811.942.748 (3)176
O4—H4A···O6ii0.822.082.681 (3)130
O4—H4A···O7ii0.822.252.997 (3)152
O5—H5A···O2W0.822.212.649 (4)114
O8—H8A···O1Wiii0.811.882.689 (3)175
O9—H9···O2i0.821.912.670 (3)153
O10—H10···O9iv0.822.042.685 (3)135
O1W—H1W···O2Wv0.851.952.790 (3)168
O1W—H2W···O4vi0.852.132.969 (3)170
O2W—H3W···O1ii0.852.022.866 (3)169
O2W—H4W···O50.851.832.649 (4)159
Table 1

Selected bond lengths (Å)

Cu1—N12.0367 (19)
Cu1—N22.0185 (19)
Cu1—O22.0180 (16)
Cu1—O32.1989 (18)
Cu1—O72.0220 (16)
Cu1—O82.1537 (17)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3A⋯O10i0.811.942.748 (3)176
O4—H4A⋯O6ii0.822.082.681 (3)130
O4—H4A⋯O7ii0.822.252.997 (3)152
O5—H5A⋯O2W0.822.212.649 (4)114
O8—H8A⋯O1Wiii0.811.882.689 (3)175
O9—H9⋯O2i0.821.912.670 (3)153
O10—H10⋯O9iv0.822.042.685 (3)135
O1W—H1W⋯O2Wv0.851.952.790 (3)168
O1W—H2W⋯O4vi0.852.132.969 (3)170
O2W—H3W⋯O1ii0.852.022.866 (3)169
O2W—H4W⋯O50.851.832.649 (4)159

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

  1 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  1 in total
  1 in total

1.  Retraction of articles.

Authors: 
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-09-14
  1 in total

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