Literature DB >> 21581758

(2,2'-Bipyridine-κN,N')(4-hydr-oxy-2-oxidobenzaldehyde thio-semicar-ba-zon-ato-κO,N,S)zinc(II).

Kong Wai Tan, Chew Hee Ng, Mohd Jamil Maah, Seik Weng Ng.   

Abstract

The Zn(II) atom in the title compound, [n class="Chemical">Zn(C(8)H(7)N(3)O(2)S)(C(10)H(8)N(2))], is N,N'-chelated by the heterocycle and N,O,S-chelated by the doubly deprotonated Schiff base ligand in a distorted square-pyramidal environment. O-H⋯O and N-H⋯N hydrogen bonds link adjacent mol-ecules into a layer structure.

Entities:  

Year:  2009        PMID: 21581758      PMCID: PMC2968129          DOI: 10.1107/S1600536808043973

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the square-pyramidal 1,10-phenanthroline adduct, which exists as a monohydrated n class="Chemical">DMSO disolvate, see: Tan et al. (2009 ▶).

Experimental

Crystal data

[Zn(C8n class="Species">H7N3O2S)(C10H8N2)] M = 430.78 Monoclinic, a = 16.1256 (4) Å b = 7.0478 (2) Å c = 17.6387 (5) Å β = 113.646 (2)° V = 1836.33 (9) Å3 Z = 4 Mo Kα radiation μ = 1.48 mm−1 T = 100 (2) K 0.10 × 0.04 × 0.02 mm

Data collection

Bruker SMART APEX diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.867, T max = 0.971 15773 measured reflections 4191 independent reflections 2919 reflections with I > 2σ(I) R int = 0.086

Refinement

R[F 2 > 2σ(F 2)] = 0.062 wR(F 2) = 0.195 S = 1.04 4191 reflections 245 parameters 24 restraints H-atom parameters constrained Δρmax = 0.88 e Å−3 Δρmin = −0.96 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: publCIF (Westrip, 2009 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808043973/tk2348sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808043973/tk2348Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Zn(C8H7N3O2S)(C10H8N2)]F(000) = 880
Mr = 430.78Dx = 1.558 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3053 reflections
a = 16.1256 (4) Åθ = 2.3–26.2°
b = 7.0478 (2) ŵ = 1.48 mm1
c = 17.6387 (5) ÅT = 100 K
β = 113.646 (2)°Prism, yellow
V = 1836.33 (9) Å30.10 × 0.04 × 0.02 mm
Z = 4
Bruker SMART APEX diffractometer4191 independent reflections
Radiation source: fine-focus sealed tube2919 reflections with I > 2σ(I)
graphiteRint = 0.086
ω scansθmax = 27.5°, θmin = 1.4°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −20→20
Tmin = 0.867, Tmax = 0.971k = −9→9
15773 measured reflectionsl = −21→22
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.062Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.195H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.1071P)2 + 3.3408P] where P = (Fo2 + 2Fc2)/3
4191 reflections(Δ/σ)max = 0.001
245 parametersΔρmax = 0.88 e Å3
24 restraintsΔρmin = −0.96 e Å3
xyzUiso*/Ueq
Zn10.26010 (4)0.61341 (9)0.78222 (4)0.0186 (2)
S10.35671 (10)0.8297 (2)0.75159 (9)0.0239 (3)
O10.1393 (2)0.4912 (5)0.7423 (2)0.0221 (8)
O2−0.0804 (3)−0.0017 (6)0.6388 (2)0.0238 (8)
H2−0.09410.03250.67800.036*
N10.2953 (3)0.4436 (7)0.7058 (3)0.0213 (10)
N20.3774 (3)0.4754 (7)0.6981 (3)0.0226 (10)
N30.4867 (3)0.6892 (7)0.7112 (3)0.0276 (11)
H310.51350.60210.69320.033*
H320.51070.80290.72420.033*
N40.3299 (3)0.4781 (7)0.8970 (3)0.0276 (11)
N60.2340 (3)0.7942 (6)0.8656 (3)0.0186 (9)
C10.1130 (4)0.3300 (8)0.7005 (3)0.0198 (11)
C20.0305 (3)0.2459 (8)0.6918 (3)0.0192 (11)
H2A−0.00490.30530.71700.023*
C3−0.0009 (4)0.0790 (8)0.6476 (3)0.0199 (11)
C40.0493 (4)−0.0115 (8)0.6105 (3)0.0250 (12)
H40.0276−0.12480.57980.030*
C50.1305 (4)0.0642 (8)0.6187 (3)0.0246 (12)
H50.16440.00170.59270.030*
C60.1660 (3)0.2315 (7)0.6641 (3)0.0182 (10)
C70.2514 (4)0.2930 (8)0.6672 (3)0.0210 (11)
H70.27880.21800.63880.025*
C80.4083 (4)0.6481 (8)0.7189 (3)0.0233 (12)
C90.3807 (6)0.3222 (11)0.9082 (5)0.0486 (19)
H90.38520.26320.86150.058*
C100.4268 (7)0.2446 (14)0.9857 (5)0.068 (3)
H100.46310.13460.99240.082*
C110.4195 (6)0.3282 (13)1.0529 (5)0.059 (2)
H110.45030.27521.10650.071*
C120.3680 (5)0.4878 (11)1.0429 (4)0.0390 (16)
H120.36280.54801.08900.047*
C130.3235 (4)0.5594 (9)0.9635 (3)0.0246 (12)
C140.2655 (4)0.7348 (8)0.9444 (3)0.0235 (12)
C150.2450 (5)0.8306 (10)1.0037 (4)0.0345 (15)
H150.26720.78611.05920.041*
C160.1917 (5)0.9915 (11)0.9804 (4)0.0429 (18)
H160.17541.05731.01940.051*
C170.1624 (5)1.0556 (9)0.9000 (4)0.0356 (15)
H170.12761.16840.88310.043*
C180.1848 (4)0.9525 (8)0.8448 (4)0.0242 (12)
H180.16430.99610.78930.029*
U11U22U33U12U13U23
Zn10.0165 (3)0.0207 (3)0.0182 (3)0.0020 (2)0.0065 (2)0.0029 (2)
S10.0208 (7)0.0196 (7)0.0340 (8)0.0012 (5)0.0139 (6)0.0039 (5)
O10.0178 (19)0.021 (2)0.028 (2)−0.0017 (15)0.0101 (16)−0.0024 (16)
O20.0186 (19)0.027 (2)0.025 (2)−0.0039 (16)0.0079 (16)−0.0022 (16)
N10.018 (2)0.026 (2)0.021 (2)−0.0014 (19)0.0095 (19)0.0022 (18)
N20.014 (2)0.030 (3)0.024 (2)−0.0033 (19)0.0094 (19)−0.002 (2)
N30.022 (2)0.025 (2)0.043 (3)−0.006 (2)0.021 (2)−0.005 (2)
N40.027 (3)0.033 (3)0.024 (2)0.009 (2)0.012 (2)0.012 (2)
N60.016 (2)0.019 (2)0.019 (2)0.0003 (17)0.0052 (18)0.0038 (17)
C10.020 (3)0.019 (3)0.019 (3)0.002 (2)0.007 (2)0.004 (2)
C20.016 (2)0.024 (3)0.018 (2)0.002 (2)0.007 (2)0.002 (2)
C30.015 (2)0.023 (3)0.018 (2)0.001 (2)0.002 (2)0.006 (2)
C40.027 (3)0.026 (3)0.022 (3)−0.002 (2)0.010 (2)0.000 (2)
C50.024 (3)0.028 (3)0.023 (3)0.003 (2)0.010 (2)−0.003 (2)
C60.018 (3)0.018 (3)0.018 (2)0.002 (2)0.006 (2)0.0031 (19)
C70.022 (3)0.025 (3)0.018 (3)0.000 (2)0.009 (2)−0.001 (2)
C80.022 (3)0.026 (3)0.025 (3)0.001 (2)0.013 (2)0.003 (2)
C90.059 (4)0.049 (4)0.048 (4)0.032 (4)0.032 (4)0.022 (3)
C100.085 (6)0.075 (5)0.054 (5)0.054 (5)0.037 (4)0.031 (4)
C110.065 (5)0.076 (5)0.039 (4)0.037 (4)0.024 (4)0.032 (4)
C120.039 (4)0.051 (4)0.032 (3)0.010 (3)0.019 (3)0.015 (3)
C130.020 (3)0.031 (3)0.021 (3)0.000 (2)0.006 (2)0.007 (2)
C140.022 (3)0.027 (3)0.019 (3)−0.007 (2)0.005 (2)−0.003 (2)
C150.042 (4)0.036 (4)0.021 (3)0.001 (3)0.008 (3)−0.007 (2)
C160.053 (5)0.041 (4)0.029 (3)0.004 (3)0.011 (3)−0.014 (3)
C170.040 (4)0.028 (3)0.034 (3)0.010 (3)0.010 (3)−0.002 (3)
C180.020 (3)0.023 (3)0.023 (3)−0.001 (2)0.002 (2)−0.001 (2)
Zn1—O11.983 (4)C4—C51.367 (8)
Zn1—N12.045 (5)C4—H40.9500
Zn1—N42.109 (5)C5—C61.412 (8)
Zn1—N62.112 (5)C5—H50.9500
Zn1—S12.3911 (15)C6—C71.423 (7)
S1—C81.746 (6)C7—H70.9500
O1—C11.329 (7)C9—C101.381 (10)
O2—C31.354 (6)C9—H90.9500
O2—H20.8400C10—C111.370 (12)
N1—C71.306 (7)C10—H100.9500
N1—N21.403 (6)C11—C121.367 (10)
N2—C81.310 (7)C11—H110.9500
N3—C81.355 (7)C12—C131.387 (8)
N3—H310.8800C12—H120.9500
N3—H320.8800C13—C141.505 (8)
N4—C91.338 (8)C14—C151.393 (8)
N4—C131.346 (8)C15—C161.382 (10)
N6—C181.333 (7)C15—H150.9500
N6—C141.340 (7)C16—C171.380 (9)
C1—C21.408 (7)C16—H160.9500
C1—C61.437 (7)C17—C181.373 (9)
C2—C31.389 (8)C17—H170.9500
C2—H2A0.9500C18—H180.9500
C3—C41.385 (8)
O1—Zn1—N190.29 (16)C6—C5—H5118.7
O1—Zn1—N4102.37 (18)C5—C6—C7116.2 (5)
N1—Zn1—N4100.70 (19)C5—C6—C1118.6 (5)
O1—Zn1—N693.82 (16)C7—C6—C1125.1 (5)
N1—Zn1—N6175.77 (18)N1—C7—C6125.5 (5)
N4—Zn1—N677.46 (19)N1—C7—H7117.2
O1—Zn1—S1146.42 (12)C6—C7—H7117.2
N1—Zn1—S181.14 (13)N2—C8—N3115.8 (5)
N4—Zn1—S1111.10 (15)N2—C8—S1126.5 (4)
N6—Zn1—S195.92 (13)N3—C8—S1117.6 (4)
C8—S1—Zn192.73 (19)N4—C9—C10121.7 (7)
C1—O1—Zn1128.1 (3)N4—C9—H9119.1
C3—O2—H2109.5C10—C9—H9119.1
C7—N1—N2114.5 (5)C11—C10—C9119.2 (7)
C7—N1—Zn1125.7 (4)C11—C10—H10120.4
N2—N1—Zn1119.5 (3)C9—C10—H10120.4
C8—N2—N1112.9 (5)C10—C11—C12120.0 (7)
C8—N3—H31120.0C10—C11—H11120.0
C8—N3—H32120.0C12—C11—H11120.0
H31—N3—H32120.0C11—C12—C13118.1 (7)
C9—N4—C13118.5 (5)C11—C12—H12121.0
C9—N4—Zn1124.9 (5)C13—C12—H12121.0
C13—N4—Zn1116.5 (4)N4—C13—C12122.4 (6)
C18—N6—C14118.9 (5)N4—C13—C14114.3 (5)
C18—N6—Zn1125.2 (4)C12—C13—C14123.2 (6)
C14—N6—Zn1115.8 (4)N6—C14—C15121.5 (6)
O1—C1—C2119.8 (5)N6—C14—C13115.6 (5)
O1—C1—C6123.2 (5)C15—C14—C13122.9 (5)
C2—C1—C6117.0 (5)C16—C15—C14118.7 (6)
C3—C2—C1122.2 (5)C16—C15—H15120.6
C3—C2—H2A118.9C14—C15—H15120.6
C1—C2—H2A118.9C17—C16—C15119.3 (6)
O2—C3—C4117.3 (5)C17—C16—H16120.3
O2—C3—C2122.4 (5)C15—C16—H16120.3
C4—C3—C2120.3 (5)C18—C17—C16118.5 (6)
C5—C4—C3119.2 (5)C18—C17—H17120.8
C5—C4—H4120.4C16—C17—H17120.8
C3—C4—H4120.4N6—C18—C17123.0 (5)
C4—C5—C6122.6 (5)N6—C18—H18118.5
C4—C5—H5118.7C17—C18—H18118.5
O1—Zn1—S1—C8−95.8 (3)C4—C5—C6—C1−2.5 (8)
N1—Zn1—S1—C8−18.8 (2)O1—C1—C6—C5−178.1 (5)
N4—Zn1—S1—C879.3 (2)C2—C1—C6—C53.3 (7)
N6—Zn1—S1—C8158.1 (2)O1—C1—C6—C7−0.7 (8)
N1—Zn1—O1—C115.3 (4)C2—C1—C6—C7−179.2 (5)
N4—Zn1—O1—C1−85.8 (4)N2—N1—C7—C6−178.8 (5)
N6—Zn1—O1—C1−163.8 (4)Zn1—N1—C7—C67.3 (8)
S1—Zn1—O1—C189.5 (5)C5—C6—C7—N1180.0 (5)
O1—Zn1—N1—C7−13.1 (5)C1—C6—C7—N12.5 (9)
N4—Zn1—N1—C789.5 (5)N1—N2—C8—N3−178.7 (5)
S1—Zn1—N1—C7−160.5 (5)N1—N2—C8—S1−1.0 (7)
O1—Zn1—N1—N2173.2 (4)Zn1—S1—C8—N217.3 (5)
N4—Zn1—N1—N2−84.1 (4)Zn1—S1—C8—N3−165.0 (4)
S1—Zn1—N1—N225.8 (4)C13—N4—C9—C10−0.5 (12)
C7—N1—N2—C8163.9 (5)Zn1—N4—C9—C10178.0 (7)
Zn1—N1—N2—C8−21.8 (6)N4—C9—C10—C110.7 (15)
O1—Zn1—N4—C992.1 (6)C9—C10—C11—C12−0.8 (16)
N1—Zn1—N4—C9−0.5 (6)C10—C11—C12—C130.6 (13)
N6—Zn1—N4—C9−176.7 (6)C9—N4—C13—C120.3 (10)
S1—Zn1—N4—C9−85.1 (6)Zn1—N4—C13—C12−178.3 (5)
O1—Zn1—N4—C13−89.4 (4)C9—N4—C13—C14179.5 (6)
N1—Zn1—N4—C13177.9 (4)Zn1—N4—C13—C140.9 (6)
N6—Zn1—N4—C131.8 (4)C11—C12—C13—N4−0.4 (10)
S1—Zn1—N4—C1393.4 (4)C11—C12—C13—C14−179.5 (7)
O1—Zn1—N6—C18−78.4 (4)C18—N6—C14—C152.6 (8)
N4—Zn1—N6—C18179.8 (5)Zn1—N6—C14—C15−173.4 (5)
S1—Zn1—N6—C1869.4 (4)C18—N6—C14—C13−177.6 (5)
O1—Zn1—N6—C1497.3 (4)Zn1—N6—C14—C136.4 (6)
N4—Zn1—N6—C14−4.6 (4)N4—C13—C14—N6−4.9 (7)
S1—Zn1—N6—C14−114.9 (4)C12—C13—C14—N6174.3 (6)
Zn1—O1—C1—C2167.2 (4)N4—C13—C14—C15174.9 (6)
Zn1—O1—C1—C6−11.3 (7)C12—C13—C14—C15−5.9 (9)
O1—C1—C2—C3179.0 (5)N6—C14—C15—C16−0.7 (10)
C6—C1—C2—C3−2.4 (8)C13—C14—C15—C16179.5 (6)
C1—C2—C3—O2−179.6 (5)C14—C15—C16—C17−1.7 (11)
C1—C2—C3—C40.3 (8)C15—C16—C17—C182.3 (11)
O2—C3—C4—C5−179.3 (5)C14—N6—C18—C17−2.0 (9)
C2—C3—C4—C50.7 (8)Zn1—N6—C18—C17173.5 (5)
C3—C4—C5—C60.4 (9)C16—C17—C18—N6−0.5 (10)
C4—C5—C6—C7179.9 (5)
D—H···AD—HH···AD···AD—H···A
O2—H2···O1i0.841.852.625 (5)153
N3—H32···N2ii0.882.152.936 (7)148
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2⋯O1i0.841.852.625 (5)153
N3—H32⋯N2ii0.882.152.936 (7)148

Symmetry codes: (i) ; (ii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  (4-Hydr-oxy-2-oxidobenzaldehyde thio-semicarbazonato-κO,N,S)(1,10-phenanthroline-κN,N')zinc(II) dimethyl sulfoxide disolvate monohydrate.

Authors:  Kong Wai Tan; Chew Hee Ng; Mohd Jamil Maah; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-12-13
  2 in total

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