Literature DB >> 21581736

4-[(5-Bromo-2-hydroxy-benzyl-idene)amino]-N-(4,6-dimethyl-pyrimidin-2-yl)benzene-sulfonamide-4-bromo-2-[(E)-({4-[(4,6-dimethyl-pyrimidin-2-yl)sulfamo-yl]phen-yl}iminio)meth-yl]phenolate [0.61 (7)/0.39 (7)].

Hazoor A Shad, M Nawaz Tahir, Zahid H Chohan.   

Abstract

The title compound, 0.61C(19)H(17)BrN(4)O(3)S·0.39C(19)H(17)BrN(4)O(3)S, is a Schiff base derived from 5-bromo-salicylaldehyde and 4-amino-N-(4,6-dimethyl-2-pyrimidin-yl)benzene-sulfonamide(sulfamethazine) and is isostructural with its chloro analogue. The geometry of the title mol-ecule points to the enol (OH-C=C-C=N) form as the major tautomer, however two electron-density maxima corresponding to the H atoms of the OH and NH groups, found in the region of a strong intra-molecular N⋯H⋯O hydrogen bond, do not allow the elimination of the presence of the zwitterionic (O(-)-C=C-C=NH(+)) form in the crystal. Refinement of the occupancies of these H atoms gave a 0.61 (7):0.39 (7) ratio of the enolic and zwitterionic forms. The two benzene rings within the mol-ecule are nearly coplanar and the central benzene ring forms a dihedral angle of 84.1 (1)° with the pyrimidine fragment. An inter-molecular N-H⋯O hydrogen bond links mol-ecules into chains extended along the a axis and a C-H⋯O link is also present. The H atoms of one of the methyl groups are disordered over two sites with an occupancy ratio of 0.72 (7):0.28 (7).

Entities:  

Year:  2008        PMID: 21581736      PMCID: PMC2968005          DOI: 10.1107/S1600536808041214

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structures of similar sulphonamides, see: Chohan et al. (2008a ▶,b ▶); Shad et al. (2008 ▶); Tahir et al. (2008 ▶).

Experimental

Crystal data

0.61C19H17BrN4O3S·0.39C19H17BrN4O3S M = 461.34 Orthorhombic, a = 11.7919 (9) Å b = 13.9965 (8) Å c = 23.5117 (17) Å V = 3880.5 (5) Å3 Z = 8 Mo Kα radiation μ = 2.26 mm−1 T = 296 (2) K 0.20 × 0.16 × 0.14 mm

Data collection

Bruker KAPPA APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.650, T max = 0.725 19597 measured reflections 3428 independent reflections 1961 reflections with I > 2σ(I) R int = 0.081

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.131 S = 1.00 3428 reflections 257 parameters H-atom parameters constrained Δρmax = 0.35 e Å−3 Δρmin = −0.65 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2003 ▶); software used to prepare material for publication: WinGX publication routines (Farrugia, 1999 ▶) and PLATON. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808041214/gk2160sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808041214/gk2160Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
0.61C19H17BrN4O3S·0.39C19H17BrN4O3SDx = 1.579 Mg m3
Mr = 461.34Melting point: 497 K
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 3428 reflections
a = 11.7919 (9) Åθ = 2.4–25.0°
b = 13.9965 (8) ŵ = 2.26 mm1
c = 23.5117 (17) ÅT = 296 K
V = 3880.5 (5) Å3Prismatic, red
Z = 80.20 × 0.16 × 0.14 mm
F(000) = 1872
Bruker KAPPA APEXII CCD diffractometer3428 independent reflections
Radiation source: fine-focus sealed tube1961 reflections with I > 2σ(I)
graphiteRint = 0.081
Detector resolution: 7.9 pixels mm-1θmax = 25.0°, θmin = 2.4°
ω scansh = −14→14
Absorption correction: multi-scan (SADABS; Bruker, 2005)k = −16→16
Tmin = 0.650, Tmax = 0.725l = −27→26
19597 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.048Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.131H-atom parameters constrained
S = 1.00w = 1/[σ2(Fo2) + (0.057P)2 + 2.1678P] where P = (Fo2 + 2Fc2)/3
3428 reflections(Δ/σ)max = 0.001
257 parametersΔρmax = 0.35 e Å3
0 restraintsΔρmin = −0.65 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Br11.18229 (5)0.76268 (4)0.36991 (3)0.0824 (3)
S10.40502 (9)0.37094 (8)0.60341 (5)0.0417 (3)
O10.9535 (3)0.3837 (2)0.39965 (16)0.0716 (11)
H1O0.91240.36920.42870.086*0.61 (7)
N10.8172 (3)0.4593 (3)0.46953 (16)0.0426 (9)
H1N0.86010.39680.45580.051*0.39 (7)
O20.3377 (3)0.3110 (2)0.56749 (13)0.0560 (9)
O30.3565 (2)0.4558 (2)0.62541 (13)0.0511 (8)
N20.4430 (3)0.2997 (2)0.65478 (15)0.0452 (10)
H2N0.41770.24210.65350.068*
N30.5374 (3)0.2497 (3)0.73414 (17)0.0472 (10)
N40.5447 (3)0.4138 (2)0.70529 (16)0.0458 (9)
C10.9643 (4)0.5482 (3)0.42496 (19)0.0440 (11)
C21.0200 (4)0.6363 (3)0.4176 (2)0.0493 (12)
H20.99660.68940.43830.059*
C31.1079 (4)0.6443 (3)0.3803 (2)0.0538 (13)
C41.1447 (4)0.5657 (4)0.3499 (2)0.0661 (15)
H41.20540.57160.32490.079*
C51.0922 (4)0.4790 (4)0.3565 (2)0.0685 (16)
H51.11680.42690.33520.082*
C61.0036 (4)0.4677 (3)0.3942 (2)0.0532 (13)
C70.8679 (4)0.5393 (3)0.46274 (19)0.0450 (11)
H70.84240.59270.48240.054*
C80.7198 (3)0.4440 (3)0.50347 (18)0.0375 (10)
C90.6759 (4)0.3538 (3)0.5027 (2)0.0538 (13)
H90.71070.30670.48090.065*
C100.5808 (4)0.3317 (3)0.5338 (2)0.0548 (13)
H100.55140.27010.53290.066*
C110.5290 (3)0.4005 (3)0.56628 (17)0.0359 (10)
C120.5738 (4)0.4917 (3)0.56843 (19)0.0430 (11)
H120.54050.53820.59120.052*
C130.6683 (4)0.5127 (3)0.5365 (2)0.0457 (12)
H130.69790.57430.53720.055*
C140.5124 (3)0.3231 (3)0.70054 (19)0.0417 (11)
C150.6020 (4)0.2704 (3)0.7790 (2)0.0523 (13)
C160.6396 (4)0.3624 (4)0.7881 (2)0.0579 (13)
H160.68500.37640.81930.069*
C170.6095 (4)0.4328 (3)0.7507 (2)0.0501 (12)
C180.6482 (5)0.5342 (4)0.7575 (3)0.0784 (17)
H18A0.68460.55500.72310.118*
H18B0.70090.53820.78850.118*
H18C0.58400.57430.76520.118*
C190.6307 (5)0.1897 (4)0.8188 (2)0.0797 (18)
H19A0.59730.13160.80500.120*0.72 (7)
H19B0.60150.20360.85600.120*0.72 (7)
H19C0.71150.18240.82080.120*0.72 (7)
H19D0.67620.21340.84950.120*0.28 (7)
H19E0.67200.14140.79850.120*0.28 (7)
H19F0.56200.16260.83370.120*0.28 (7)
U11U22U33U12U13U23
Br10.0841 (5)0.0587 (4)0.1044 (6)−0.0198 (3)0.0112 (4)0.0058 (3)
S10.0396 (6)0.0417 (6)0.0437 (7)−0.0038 (5)−0.0033 (5)0.0005 (6)
O10.086 (3)0.0396 (19)0.089 (3)−0.0101 (18)0.039 (2)−0.0107 (19)
N10.044 (2)0.043 (2)0.041 (2)0.0041 (18)0.0030 (19)0.0006 (18)
O20.053 (2)0.060 (2)0.056 (2)−0.0146 (16)−0.0152 (17)−0.0017 (17)
O30.0480 (18)0.0495 (19)0.056 (2)0.0038 (15)0.0073 (16)−0.0015 (16)
N20.055 (2)0.039 (2)0.042 (2)−0.0141 (18)−0.010 (2)0.0017 (18)
N30.047 (2)0.051 (2)0.043 (3)0.0018 (18)−0.003 (2)0.000 (2)
N40.050 (2)0.046 (2)0.042 (3)−0.0097 (18)0.001 (2)−0.0051 (19)
C10.042 (3)0.049 (3)0.041 (3)0.005 (2)−0.006 (2)0.000 (2)
C20.056 (3)0.038 (3)0.054 (3)0.002 (2)−0.003 (3)−0.003 (2)
C30.043 (3)0.052 (3)0.066 (4)−0.003 (2)0.002 (3)0.006 (3)
C40.053 (3)0.060 (3)0.086 (4)0.002 (3)0.028 (3)−0.002 (3)
C50.063 (3)0.052 (3)0.091 (5)0.001 (3)0.031 (3)−0.010 (3)
C60.056 (3)0.041 (3)0.063 (4)0.003 (2)0.008 (3)−0.003 (3)
C70.051 (3)0.041 (3)0.044 (3)0.010 (2)0.000 (2)−0.002 (2)
C80.037 (2)0.043 (3)0.033 (3)0.004 (2)0.002 (2)0.001 (2)
C90.060 (3)0.044 (3)0.058 (3)0.002 (2)0.016 (3)−0.013 (2)
C100.059 (3)0.038 (3)0.067 (4)−0.006 (2)0.011 (3)−0.011 (2)
C110.040 (2)0.034 (2)0.034 (3)0.0019 (19)−0.004 (2)−0.0028 (19)
C120.050 (3)0.039 (3)0.040 (3)0.005 (2)0.008 (2)−0.007 (2)
C130.050 (3)0.035 (2)0.052 (3)−0.004 (2)0.006 (2)−0.006 (2)
C140.041 (3)0.048 (3)0.036 (3)−0.002 (2)0.004 (2)−0.001 (2)
C150.054 (3)0.057 (3)0.046 (3)0.016 (3)0.007 (3)−0.003 (3)
C160.046 (3)0.082 (4)0.046 (3)0.008 (3)−0.009 (2)−0.016 (3)
C170.043 (3)0.061 (3)0.046 (3)−0.005 (2)0.005 (2)−0.012 (3)
C180.085 (4)0.070 (4)0.081 (5)−0.031 (3)−0.002 (3)−0.020 (3)
C190.095 (4)0.083 (4)0.061 (4)0.035 (3)−0.016 (3)0.002 (3)
Br1—C31.890 (5)C7—H70.9300
S1—O31.416 (3)C8—C91.365 (6)
S1—O21.431 (3)C8—C131.378 (6)
S1—N21.629 (4)C9—C101.374 (6)
S1—C111.753 (4)C9—H90.9300
O1—C61.322 (5)C10—C111.372 (6)
O1—H1O0.8621C10—H100.9300
N1—C71.279 (5)C11—C121.381 (5)
N1—C81.414 (5)C12—C131.375 (6)
N1—H1N1.0611C12—H120.9300
N2—C141.391 (5)C13—H130.9300
N2—H2N0.8600C15—C161.378 (6)
N3—C141.329 (5)C15—C191.506 (7)
N3—C151.332 (6)C16—C171.368 (6)
N4—C141.330 (5)C16—H160.9300
N4—C171.339 (6)C17—C181.499 (6)
C1—C21.408 (6)C18—H18A0.9600
C1—C61.416 (6)C18—H18B0.9600
C1—C71.448 (6)C18—H18C0.9600
C2—C31.362 (6)C19—H19A0.9600
C2—H20.9300C19—H19B0.9600
C3—C41.382 (7)C19—H19C0.9600
C4—C51.371 (6)C19—H19D0.9600
C4—H40.9300C19—H19E0.9600
C5—C61.380 (7)C19—H19F0.9600
C5—H50.9300
O3—S1—O2118.9 (2)C11—C10—C9120.1 (4)
O3—S1—N2110.7 (2)C11—C10—H10120.0
O2—S1—N2103.37 (18)C9—C10—H10120.0
O3—S1—C11108.73 (19)C10—C11—C12119.9 (4)
O2—S1—C11107.90 (19)C10—C11—S1118.8 (3)
N2—S1—C11106.54 (18)C12—C11—S1121.3 (3)
C6—O1—H1O122.5C13—C12—C11119.2 (4)
C7—N1—C8125.7 (4)C13—C12—H12120.4
C7—N1—H1N117.4C11—C12—H12120.4
C8—N1—H1N115.7C12—C13—C8121.0 (4)
C14—N2—S1126.3 (3)C12—C13—H13119.5
C14—N2—H2N116.9C8—C13—H13119.5
S1—N2—H2N116.9N3—C14—N4128.6 (4)
C14—N3—C15115.4 (4)N3—C14—N2114.1 (4)
C14—N4—C17114.8 (4)N4—C14—N2117.2 (4)
C2—C1—C6118.8 (4)N3—C15—C16120.7 (5)
C2—C1—C7121.1 (4)N3—C15—C19117.2 (5)
C6—C1—C7120.1 (4)C16—C15—C19122.2 (5)
C3—C2—C1120.4 (4)C17—C16—C15119.3 (5)
C3—C2—H2119.8C17—C16—H16120.3
C1—C2—H2119.8C15—C16—H16120.3
C2—C3—C4120.4 (4)N4—C17—C16121.1 (4)
C2—C3—Br1120.6 (4)N4—C17—C18116.6 (5)
C4—C3—Br1119.0 (4)C16—C17—C18122.3 (5)
C5—C4—C3120.3 (5)C17—C18—H18A109.5
C5—C4—H4119.8C17—C18—H18B109.5
C3—C4—H4119.8H18A—C18—H18B109.5
C4—C5—C6121.1 (5)C17—C18—H18C109.5
C4—C5—H5119.5H18A—C18—H18C109.5
C6—C5—H5119.5H18B—C18—H18C109.5
O1—C6—C5120.2 (4)C15—C19—H19A109.5
O1—C6—C1120.8 (4)C15—C19—H19B109.5
C5—C6—C1119.0 (4)H19A—C19—H19B109.5
N1—C7—C1121.3 (4)C15—C19—H19C109.5
N1—C7—H7119.4H19A—C19—H19C109.5
C1—C7—H7119.4H19B—C19—H19C109.5
C9—C8—C13119.1 (4)C15—C19—H19D109.5
C9—C8—N1116.2 (4)C15—C19—H19E109.5
C13—C8—N1124.7 (4)H19D—C19—H19E109.5
C8—C9—C10120.7 (4)C15—C19—H19F109.5
C8—C9—H9119.6H19D—C19—H19F109.5
C10—C9—H9119.6H19E—C19—H19F109.5
O3—S1—N2—C14−53.3 (4)O3—S1—C11—C10−169.9 (4)
O2—S1—N2—C14178.3 (4)O2—S1—C11—C10−39.7 (4)
C11—S1—N2—C1464.7 (4)N2—S1—C11—C1070.8 (4)
C6—C1—C2—C31.9 (7)O3—S1—C11—C129.0 (4)
C7—C1—C2—C3−177.5 (4)O2—S1—C11—C12139.2 (3)
C1—C2—C3—C4−1.1 (7)N2—S1—C11—C12−110.4 (4)
C1—C2—C3—Br1179.6 (3)C10—C11—C12—C131.9 (7)
C2—C3—C4—C50.8 (8)S1—C11—C12—C13−177.0 (3)
Br1—C3—C4—C5−179.9 (4)C11—C12—C13—C8−1.3 (7)
C3—C4—C5—C6−1.4 (9)C9—C8—C13—C12−0.1 (7)
C4—C5—C6—O1179.4 (5)N1—C8—C13—C12−179.8 (4)
C4—C5—C6—C12.2 (8)C15—N3—C14—N41.1 (7)
C2—C1—C6—O1−179.6 (4)C15—N3—C14—N2−178.7 (4)
C7—C1—C6—O1−0.2 (7)C17—N4—C14—N3−1.1 (7)
C2—C1—C6—C5−2.4 (7)C17—N4—C14—N2178.7 (4)
C7—C1—C6—C5177.0 (5)S1—N2—C14—N3−175.0 (3)
C8—N1—C7—C1−177.3 (4)S1—N2—C14—N45.2 (6)
C2—C1—C7—N1180.0 (4)C14—N3—C15—C16−0.7 (6)
C6—C1—C7—N10.6 (7)C14—N3—C15—C19179.0 (4)
C7—N1—C8—C9177.0 (4)N3—C15—C16—C170.4 (7)
C7—N1—C8—C13−3.2 (7)C19—C15—C16—C17−179.3 (5)
C13—C8—C9—C100.8 (7)C14—N4—C17—C160.7 (6)
N1—C8—C9—C10−179.4 (4)C14—N4—C17—C18179.7 (4)
C8—C9—C10—C11−0.3 (7)C15—C16—C17—N4−0.4 (7)
C9—C10—C11—C12−1.1 (7)C15—C16—C17—C18−179.4 (5)
C9—C10—C11—S1177.8 (4)
D—H···AD—HH···AD···AD—H···A
N1—H1N···O11.061.732.530 (5)129
O1—H1O···N10.861.942.530 (5)124
N2—H2N···O1i0.862.202.871 (4)135
C9—H9···O2ii0.932.503.417 (5)169
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N⋯O11.061.732.530 (5)129
O1—H1O⋯N10.861.942.530 (5)124
N2—H2N⋯O1i0.862.202.871 (4)135
C9—H9⋯O2ii0.932.503.417 (5)169

Symmetry codes: (i) ; (ii) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  4-{2-[(5-Chloro-2-hydroxy-benzyl-idene)amino]eth-yl}benzene-sulfonamide.

Authors:  Zahid H Chohan; Hazoor A Shad; M Nawaz Tahir; Islam Ullah Khan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-03-20

3.  4-Bromo-2-((E)-{4-[(3,4-dimethyl-isoxazol-5-yl)sulfamo-yl]phen-yl}iminio-meth-yl)phenolate.

Authors:  M Nawaz Tahir; Zahid H Chohan; Hazoor A Shad; Islam Ullah Khan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-03-14

4.  4-(5-Chloro-2-hydroxy-benzyl-idene-amino)-N-(4,6-dimethyl-pyrimidin-2-yl)benzene-sulfonamide.

Authors:  Zahid H Chohan; M Nawaz Tahir; Hazoor A Shad; Islam Ullah Khan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-03-05

5.  4-Chloro-2-[(E)-({4-[N-(3,4-dimethyl-isoxazol-5-yl)sulfamo-yl]phen-yl}iminio)meth-yl]phenolate.

Authors:  Hazoor A Shad; Zahid H Chohan; M Nawaz Tahir; Islam Ullah Khan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-02-27
  5 in total

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