Literature DB >> 21581735

3,5-Dichloro-6-methyl-pyridin-2-amine.

Hoong-Kun Fun, Reza Kia, Annada C Maity, Sibaprasad Maity, Shyamaprosad Goswami.   

Abstract

In the title compound, C(6)H(6)Cl(2)N(2), intra-molecular N-H⋯Cl and C-H⋯Cl contacts generate five-membered rings, producing S(5) ring motifs. Pairs of inter-molecular N-H⋯N hydrogen bonds link neighbouring mol-ecules into dimers with R(2) (2)(8) ring motifs. In the crystal structure, these dimers are connected by N-H⋯Cl inter-actions and are packed into columns.

Entities:  

Year:  2008        PMID: 21581735      PMCID: PMC2968004          DOI: 10.1107/S1600536808041366

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For details of hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For related literature and applications see, for example: Goswami & Maity (2007 ▶); Taylor et al. (1989 ▶); Taylor & Ray (1988 ▶); Beer et al. (1993 ▶); Goswami et al. (2000 ▶, 2005 ▶); Fun et al. (2008 ▶).

Experimental

Crystal data

C6H6Cl2N2 M = 177.03 Monoclinic, a = 12.7670 (3) Å b = 3.8037 (1) Å c = 15.4129 (3) Å β = 104.990 (1)° V = 723.01 (3) Å3 Z = 4 Mo Kα radiation μ = 0.81 mm−1 T = 100.0 (1) K 0.45 × 0.31 × 0.28 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (; Bruker, 2005 ▶) T min = 0.711, T max = 0.803 26531 measured reflections 3795 independent reflections 3485 reflections with I > 2˘I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.024 wR(F 2) = 0.071 S = 1.11 3795 reflections 115 parameters All H-atom parameters refined Δρmax = 0.61 e Å−3 Δρmin = −0.42 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2003 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808041366/tk2343sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808041366/tk2343Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H6Cl2N2F(000) = 360
Mr = 177.03Dx = 1.626 Mg m3
Monoclinic, P21/nMelting point: 404 K
Hall symbol: -P 2ynMo Kα radiation, λ = 0.71073 Å
a = 12.7670 (3) ÅCell parameters from 9896 reflections
b = 3.8037 (1) Åθ = 2.4–40.3°
c = 15.4129 (3) ŵ = 0.81 mm1
β = 104.990 (1)°T = 100 K
V = 723.01 (3) Å3Block, colourless
Z = 40.45 × 0.31 × 0.28 mm
Bruker SMART APEXII CCD area-detector diffractometer3795 independent reflections
Radiation source: fine-focus sealed tube3485 reflections with I > 2˘I)
graphiteRint = 0.026
φ and ω scansθmax = 37.5°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −21→21
Tmin = 0.711, Tmax = 0.803k = −6→6
26531 measured reflectionsl = −26→26
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.024Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.071All H-atom parameters refined
S = 1.11w = 1/[σ2(Fo2) + (0.037P)2 + 0.1631P] where P = (Fo2 + 2Fc2)/3
3795 reflections(Δ/σ)max = 0.001
115 parametersΔρmax = 0.61 e Å3
0 restraintsΔρmin = −0.42 e Å3
Experimental. The low-temperature data was collected with the Oxford Cyrosystem Cobra low-temperature attachment.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.116608 (15)0.89761 (5)0.117299 (12)0.01973 (5)
Cl20.150078 (13)0.32687 (5)−0.194719 (10)0.01603 (4)
N10.36956 (5)0.65340 (16)0.02268 (4)0.01455 (9)
N20.38950 (5)0.41291 (19)−0.10983 (4)0.01738 (11)
H2N10.4571 (12)0.379 (4)−0.0819 (9)0.027 (3)*
H1N10.3607 (11)0.284 (4)−0.1526 (9)0.025 (3)*
C10.32310 (5)0.51854 (18)−0.05855 (4)0.01322 (10)
C20.20904 (5)0.49965 (17)−0.08923 (4)0.01321 (10)
C30.14544 (5)0.61633 (18)−0.03563 (4)0.01465 (10)
H30.0672 (10)0.605 (3)−0.0583 (8)0.022 (3)*
C40.19660 (5)0.75331 (18)0.04856 (4)0.01450 (10)
C50.30903 (5)0.77194 (18)0.07629 (4)0.01437 (10)
C60.37037 (7)0.9165 (2)0.16549 (5)0.02130 (13)
H6C0.4268 (13)1.055 (5)0.1579 (11)0.041 (4)*
H6B0.4079 (16)0.744 (5)0.2083 (12)0.061 (5)*
H6A0.3222 (16)1.071 (6)0.1929 (13)0.065 (6)*
U11U22U33U12U13U23
Cl10.02170 (8)0.02155 (8)0.01862 (8)0.00364 (6)0.01006 (6)−0.00108 (5)
Cl20.01665 (7)0.01786 (7)0.01167 (7)−0.00132 (5)0.00022 (5)−0.00081 (5)
N10.0143 (2)0.0174 (2)0.0113 (2)−0.00002 (17)0.00219 (17)−0.00112 (17)
N20.0146 (2)0.0247 (3)0.0127 (2)0.00163 (19)0.00317 (18)−0.00292 (19)
C10.0136 (2)0.0146 (2)0.0110 (2)0.00045 (18)0.00251 (18)0.00056 (18)
C20.0140 (2)0.0139 (2)0.0108 (2)−0.00021 (18)0.00163 (17)0.00039 (18)
C30.0143 (2)0.0153 (2)0.0142 (2)0.00085 (19)0.00352 (19)0.0011 (2)
C40.0168 (2)0.0140 (2)0.0137 (2)0.0020 (2)0.00586 (19)0.00056 (19)
C50.0172 (2)0.0141 (2)0.0117 (2)0.00022 (19)0.00350 (19)−0.00028 (19)
C60.0264 (3)0.0224 (3)0.0135 (3)−0.0011 (3)0.0023 (2)−0.0044 (2)
Cl1—C41.7396 (7)C2—C31.3733 (9)
Cl2—C21.7346 (6)C3—C41.3941 (9)
N1—C11.3409 (8)C3—H30.970 (13)
N1—C51.3468 (9)C4—C51.3894 (10)
N2—C11.3607 (9)C5—C61.4996 (10)
N2—H2N10.869 (14)C6—H6C0.924 (17)
N2—H1N10.828 (14)C6—H6B0.96 (2)
C1—C21.4118 (9)C6—H6A1.02 (2)
C1—N1—C5121.03 (6)C5—C4—C3120.23 (6)
C1—N2—H2N1116.4 (9)C5—C4—Cl1121.27 (5)
C1—N2—H1N1115.0 (9)C3—C4—Cl1118.50 (5)
H2N1—N2—H1N1119.1 (13)N1—C5—C4120.35 (6)
N1—C1—N2117.62 (6)N1—C5—C6116.03 (6)
N1—C1—C2120.07 (6)C4—C5—C6123.62 (6)
N2—C1—C2122.28 (6)C5—C6—H6C109.4 (10)
C3—C2—C1120.08 (6)C5—C6—H6B115.3 (11)
C3—C2—Cl2120.37 (5)H6C—C6—H6B102.0 (15)
C1—C2—Cl2119.55 (5)C5—C6—H6A111.3 (11)
C2—C3—C4118.24 (6)H6C—C6—H6A107.2 (15)
C2—C3—H3118.9 (7)H6B—C6—H6A110.8 (14)
C4—C3—H3122.8 (7)
C5—N1—C1—N2178.27 (6)C2—C3—C4—C50.46 (10)
C5—N1—C1—C20.13 (10)C2—C3—C4—Cl1−179.37 (5)
N1—C1—C2—C3−0.61 (10)C1—N1—C5—C40.64 (10)
N2—C1—C2—C3−178.66 (7)C1—N1—C5—C6179.98 (6)
N1—C1—C2—Cl2179.63 (5)C3—C4—C5—N1−0.94 (10)
N2—C1—C2—Cl21.58 (9)Cl1—C4—C5—N1178.89 (5)
C1—C2—C3—C40.29 (10)C3—C4—C5—C6179.77 (7)
Cl2—C2—C3—C4−179.95 (5)Cl1—C4—C5—C6−0.40 (10)
D—H···AD—HH···AD···AD—H···A
N2—H2N1···N1i0.869 (15)2.168 (15)3.0320 (9)172.8 (13)
N2—H1N1···Cl20.828 (14)2.603 (14)3.0156 (7)112.3 (12)
C6—H6A···Cl11.02 (2)2.67 (2)3.1318 (9)108.0 (14)
N2—H1N1···Cl2ii0.828 (14)2.900 (14)3.6758 (7)156.9 (13)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2N1⋯N1i0.869 (15)2.168 (15)3.0320 (9)172.8 (13)
N2—H1N1⋯Cl20.828 (14)2.603 (14)3.0156 (7)112.3 (12)
C6—H6A⋯Cl11.02 (2)2.67 (2)3.1318 (9)108.0 (14)
N2—H1N1⋯Cl2ii0.828 (14)2.900 (14)3.6758 (7)156.9 (13)

Symmetry code: (i) .

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