Literature DB >> 21581734

(+)-(S,S)-1,3-Bis[(tetra-hydro-furan-2-yl)-meth-yl]thio-urea.

Ulises Peña, Sylvain Bernès, René Gutiérrez.   

Abstract

The title compound, C(11)H(20)N(2)O(2)S, is an enanti-omerically pure heterocycle-substituted thio-urea synthesized under solvent-free conditions. The thio-urea unit adopts a ZZ conformation, with the HN-(C=S)-NH core almost planar and the tetra-hydro-furfuryl groups placed below and above this plane. The whole mol-ecule thus approximates to noncrystallographic C(2) symmetry. Unexpectedly, the C=S group is not involved in inter-molecular hydrogen bonding, as generally observed in homodisubstituted thioureas. Instead, mol-ecules form a one-dimensional network based on weak N-H⋯O(heterocycle) hydrogen bonding, resulting in a zigzag ribbon-like structure around the crystallographic 2(1) screw axis along [100].

Entities:  

Year:  2008        PMID: 21581734      PMCID: PMC2968003          DOI: 10.1107/S1600536808040373

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background about solvent-free synthesis, see: Tanaka & Toda (2000 ▶); Jeon et al. (2005 ▶). For C 2 homosubstituted thio­ureas, see: Bailey et al. (1997 ▶); Lai & Tiekink (2002 ▶). For common hydrogen-bonding schemes in thio­ureas, see: Vázquez et al. (2004 ▶); Custelcean et al. (2005 ▶); Shashidhar et al. (2006 ▶); Sadiq-ur-Rehman et al. (2007 ▶); Saxena & Pike (2007 ▶).

Experimental

Crystal data

C11H20N2O2S M = 244.35 Orthorhombic, a = 7.8588 (9) Å b = 10.8265 (11) Å c = 15.6196 (16) Å V = 1329.0 (2) Å3 Z = 4 Mo Kα radiation μ = 0.23 mm−1 T = 298 (1) K 0.6 × 0.6 × 0.6 mm

Data collection

Siemens P4 diffractometer Absorption correction: ψ scan (XSCANS; Siemens, 1996 ▶) T min = 0.782, T max = 0.870 4611 measured reflections 3026 independent reflections 2484 reflections with I > 2σ(I) R int = 0.031 3 standard reflections every 97 reflections intensity decay: 1%

Refinement

R[F 2 > 2σ(F 2)] = 0.054 wR(F 2) = 0.165 S = 1.03 3026 reflections 151 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.22 e Å−3 Δρmin = −0.16 e Å−3 Absolute structure: Flack (1983 ▶), 1267 Friedel pairs Flack parameter: −0.01 (14) Data collection: XSCANS (Siemens, 1996 ▶); cell refinement: XSCANS; data reduction: XSCANS; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808040373/ci2734sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808040373/ci2734Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H20N2O2SDx = 1.221 Mg m3
Mr = 244.35Melting point = 376–378 K
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 78 reflections
a = 7.8588 (9) Åθ = 4.6–13.7°
b = 10.8265 (11) ŵ = 0.23 mm1
c = 15.6196 (16) ÅT = 298 K
V = 1329.0 (2) Å3Block, colourless
Z = 40.6 × 0.6 × 0.6 mm
F(000) = 528
Siemens P4 diffractometer2484 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.031
graphiteθmax = 27.5°, θmin = 2.3°
2θ/ω scansh = −10→10
Absorption correction: ψ scan (XSCANS; Siemens, 1996)k = −14→14
Tmin = 0.782, Tmax = 0.870l = −20→20
4611 measured reflections3 standard reflections every 97 reflections
3026 independent reflections intensity decay: 1%
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.054H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.165w = 1/[σ2(Fo2) + (0.0916P)2 + 0.2186P] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max = 0.001
3026 reflectionsΔρmax = 0.22 e Å3
151 parametersΔρmin = −0.16 e Å3
2 restraintsAbsolute structure: Flack (1983), 1267 Friedel pairs
0 constraintsFlack parameter: −0.01 (14)
Primary atom site location: structure-invariant direct methods
xyzUiso*/Ueq
S10.48959 (12)0.46401 (7)0.34087 (6)0.0889 (3)
C10.4852 (3)0.5875 (2)0.40545 (16)0.0582 (5)
N20.4051 (3)0.6930 (2)0.38410 (17)0.0688 (6)
H20.389 (5)0.752 (2)0.4186 (18)0.083*
C30.3199 (4)0.7142 (4)0.3037 (2)0.0845 (9)
H3A0.37680.66680.25940.101*
H3B0.33030.80090.28890.101*
C40.1361 (4)0.6803 (3)0.30448 (19)0.0750 (8)
H4A0.12250.59520.32480.090*
C50.0534 (7)0.6947 (6)0.2172 (3)0.1303 (19)
H5A0.10880.75910.18420.156*
H5B0.05820.61800.18520.156*
C6−0.1224 (7)0.7283 (7)0.2368 (3)0.146 (2)
H6A−0.16360.78980.19670.175*
H6B−0.19570.65630.23360.175*
C7−0.1204 (6)0.7774 (6)0.3230 (3)0.1225 (16)
H7A−0.14980.86440.32200.147*
H7B−0.20330.73440.35800.147*
O80.0435 (3)0.7618 (2)0.35753 (14)0.0872 (7)
N120.5602 (3)0.5888 (2)0.48261 (15)0.0677 (5)
H120.541 (4)0.651 (2)0.5153 (17)0.081*
C130.6525 (4)0.4849 (3)0.5184 (2)0.0796 (8)
H13A0.59440.40920.50260.096*
H13B0.65030.49110.58030.096*
C140.8356 (3)0.4768 (2)0.48913 (18)0.0647 (6)
H14A0.83940.48200.42650.078*
C150.9260 (6)0.3588 (3)0.5178 (4)0.1075 (14)
H15A0.87230.32430.56840.129*
H15B0.92520.29720.47270.129*
C161.0986 (6)0.3991 (4)0.5365 (4)0.1293 (18)
H16A1.14210.35690.58670.155*
H16B1.17310.38150.48850.155*
C171.0897 (5)0.5297 (5)0.5515 (4)0.132 (2)
H17A1.10460.54650.61210.158*
H17B1.18010.57110.52050.158*
O180.9296 (3)0.57528 (19)0.52400 (18)0.0850 (7)
U11U22U33U12U13U23
S10.0894 (5)0.0744 (4)0.1029 (6)0.0133 (4)−0.0215 (5)−0.0363 (4)
C10.0455 (10)0.0558 (11)0.0733 (14)−0.0014 (10)0.0034 (11)−0.0067 (10)
N20.0585 (12)0.0615 (12)0.0864 (15)0.0100 (10)−0.0053 (11)−0.0065 (11)
C30.0738 (18)0.098 (2)0.0813 (18)0.0236 (18)0.0124 (15)0.0169 (17)
C40.0749 (18)0.0776 (17)0.0724 (16)0.0170 (15)−0.0110 (14)−0.0098 (14)
C50.117 (3)0.194 (5)0.081 (2)0.061 (4)−0.026 (2)−0.034 (3)
C60.114 (4)0.217 (6)0.107 (3)0.064 (4)−0.045 (3)−0.035 (4)
C70.075 (2)0.160 (4)0.133 (4)0.036 (3)−0.009 (2)−0.030 (3)
O80.0645 (11)0.1192 (17)0.0778 (12)0.0116 (11)0.0004 (10)−0.0262 (11)
N120.0551 (11)0.0755 (13)0.0725 (13)−0.0009 (10)−0.0071 (10)−0.0105 (11)
C130.0672 (15)0.0860 (19)0.0856 (18)−0.0126 (14)−0.0081 (14)0.0201 (16)
C140.0654 (13)0.0590 (13)0.0698 (14)0.0061 (11)−0.0113 (11)−0.0025 (12)
C150.107 (3)0.0628 (16)0.153 (4)0.0133 (17)−0.039 (3)0.004 (2)
C160.096 (3)0.104 (3)0.188 (5)0.032 (2)−0.051 (3)−0.006 (3)
C170.0660 (19)0.128 (4)0.201 (5)0.005 (2)−0.030 (3)−0.052 (4)
O180.0640 (11)0.0632 (10)0.1278 (18)−0.0006 (9)−0.0082 (12)−0.0171 (11)
S1—C11.675 (2)C7—H7B0.97
C1—N121.342 (3)N12—C131.450 (4)
C1—N21.346 (3)N12—H120.862 (10)
N2—C31.442 (4)C13—C141.513 (4)
N2—H20.849 (10)C13—H13A0.97
C3—C41.490 (5)C13—H13B0.97
C3—H3A0.97C14—O181.407 (3)
C3—H3B0.97C14—C151.529 (4)
C4—O81.413 (4)C14—H14A0.98
C4—C51.519 (5)C15—C161.454 (7)
C4—H4A0.98C15—H15A0.97
C5—C61.461 (7)C15—H15B0.97
C5—H5A0.97C16—C171.436 (6)
C5—H5B0.97C16—H16A0.97
C6—C71.447 (6)C16—H16B0.97
C6—H6A0.97C17—O181.418 (5)
C6—H6B0.97C17—H17A0.97
C7—O81.407 (5)C17—H17B0.97
C7—H7A0.97
N12—C1—N2114.8 (2)C7—O8—C4108.8 (3)
N12—C1—S1122.69 (19)C1—N12—C13123.9 (2)
N2—C1—S1122.5 (2)C1—N12—H12118 (2)
C1—N2—C3124.6 (3)C13—N12—H12118 (2)
C1—N2—H2124 (2)N12—C13—C14113.8 (2)
C3—N2—H2111 (3)N12—C13—H13A108.8
N2—C3—C4113.8 (3)C14—C13—H13A108.8
N2—C3—H3A108.8N12—C13—H13B108.8
C4—C3—H3A108.8C14—C13—H13B108.8
N2—C3—H3B108.8H13A—C13—H13B107.7
C4—C3—H3B108.8O18—C14—C13109.8 (2)
H3A—C3—H3B107.7O18—C14—C15106.0 (2)
O8—C4—C3110.5 (3)C13—C14—C15113.7 (3)
O8—C4—C5104.0 (3)O18—C14—H14A109.1
C3—C4—C5112.5 (4)C13—C14—H14A109.1
O8—C4—H4A109.9C15—C14—H14A109.1
C3—C4—H4A109.9C16—C15—C14104.0 (3)
C5—C4—H4A109.9C16—C15—H15A111.0
C6—C5—C4104.0 (4)C14—C15—H15A111.0
C6—C5—H5A111.0C16—C15—H15B111.0
C4—C5—H5A111.0C14—C15—H15B111.0
C6—C5—H5B111.0H15A—C15—H15B109.0
C4—C5—H5B111.0C17—C16—C15106.4 (4)
H5A—C5—H5B109.0C17—C16—H16A110.4
C7—C6—C5106.0 (4)C15—C16—H16A110.4
C7—C6—H6A110.5C17—C16—H16B110.4
C5—C6—H6A110.5C15—C16—H16B110.4
C7—C6—H6B110.5H16A—C16—H16B108.6
C5—C6—H6B110.5O18—C17—C16109.7 (4)
H6A—C6—H6B108.7O18—C17—H17A109.7
O8—C7—C6108.8 (3)C16—C17—H17A109.7
O8—C7—H7A109.9O18—C17—H17B109.7
C6—C7—H7A109.9C16—C17—H17B109.7
O8—C7—H7B109.9H17A—C17—H17B108.2
C6—C7—H7B109.9C14—O18—C17108.6 (3)
H7A—C7—H7B108.3
N12—C1—N2—C3178.2 (3)N2—C1—N12—C13179.6 (2)
S1—C1—N2—C3−2.2 (4)S1—C1—N12—C130.0 (4)
C1—N2—C3—C491.0 (4)C1—N12—C13—C1484.0 (3)
N2—C3—C4—O868.5 (4)N12—C13—C14—O1868.7 (3)
N2—C3—C4—C5−175.7 (3)N12—C13—C14—C15−172.8 (3)
O8—C4—C5—C6−28.9 (6)O18—C14—C15—C16−22.6 (5)
C3—C4—C5—C6−148.5 (5)C13—C14—C15—C16−143.3 (4)
C4—C5—C6—C721.4 (7)C14—C15—C16—C1721.4 (7)
C5—C6—C7—O8−6.3 (7)C15—C16—C17—O18−13.3 (8)
C6—C7—O8—C4−12.9 (6)C13—C14—O18—C17138.2 (4)
C3—C4—O8—C7146.8 (4)C15—C14—O18—C1715.0 (5)
C5—C4—O8—C725.9 (5)C16—C17—O18—C14−1.6 (7)
D—H···AD—HH···AD···AD—H···A
N2—H2···O18i0.85 (1)2.10 (2)2.897 (3)157 (3)
N12—H12···O8ii0.86 (1)2.20 (2)2.978 (3)150 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2⋯O18i0.85 (1)2.095 (17)2.897 (3)157 (3)
N12—H12⋯O8ii0.86 (1)2.197 (18)2.978 (3)150 (3)

Symmetry codes: (i) ; (ii) .

  4 in total

1.  Solvent-free organic synthesis.

Authors:  K Tanaka; F Toda
Journal:  Chem Rev       Date:  2000-03-08       Impact factor: 60.622

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  A green chemistry approach to a more efficient asymmetric catalyst: solvent-free and highly concentrated alkyl additions to ketones.

Authors:  Sang-Jin Jeon; Hongmei Li; Patrick J Walsh
Journal:  J Am Chem Soc       Date:  2005-11-30       Impact factor: 15.419

4.  Steric control over hydrogen bonding in crystalline organic solids: a structural study of N,N'-dialkylthioureas.

Authors:  Radu Custelcean; Maryna G Gorbunova; Peter V Bonnesen
Journal:  Chemistry       Date:  2005-02-18       Impact factor: 5.236

  4 in total

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