| Literature DB >> 21581734 |
Ulises Peña, Sylvain Bernès, René Gutiérrez.
Abstract
The title compound, C(11)H(20)N(2)O(2)S, is an enanti-omerically pure heterocycle-substituted thio-urea synthesized under solvent-free conditions. The thio-urea unit adopts a ZZ conformation, with the HN-(C=S)-NH core almost planar and the tetra-hydro-furfuryl groups placed below and above this plane. The whole mol-ecule thus approximates to noncrystallographic C(2) symmetry. Unexpectedly, the C=S group is not involved in inter-molecular hydrogen bonding, as generally observed in homodisubstituted thioureas. Instead, mol-ecules form a one-dimensional network based on weak N-H⋯O(heterocycle) hydrogen bonding, resulting in a zigzag ribbon-like structure around the crystallographic 2(1) screw axis along [100].Entities:
Year: 2008 PMID: 21581734 PMCID: PMC2968003 DOI: 10.1107/S1600536808040373
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C11H20N2O2S | |
| Melting point = 376–378 K | |
| Orthorhombic, | Mo |
| Hall symbol: P 2ac 2ab | Cell parameters from 78 reflections |
| θ = 4.6–13.7° | |
| µ = 0.23 mm−1 | |
| Block, colourless | |
| 0.6 × 0.6 × 0.6 mm | |
| Siemens P4 diffractometer | 2484 reflections with |
| Radiation source: fine-focus sealed tube | |
| graphite | θmax = 27.5°, θmin = 2.3° |
| 2θ/ω scans | |
| Absorption correction: ψ scan ( | |
| 4611 measured reflections | 3 standard reflections every 97 reflections |
| 3026 independent reflections | intensity decay: 1% |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max = 0.001 | |
| 3026 reflections | Δρmax = 0.22 e Å−3 |
| 151 parameters | Δρmin = −0.16 e Å−3 |
| 2 restraints | Absolute structure: Flack (1983), 1267 Friedel pairs |
| 0 constraints | Flack parameter: −0.01 (14) |
| Primary atom site location: structure-invariant direct methods |
| S1 | 0.48959 (12) | 0.46401 (7) | 0.34087 (6) | 0.0889 (3) | |
| C1 | 0.4852 (3) | 0.5875 (2) | 0.40545 (16) | 0.0582 (5) | |
| N2 | 0.4051 (3) | 0.6930 (2) | 0.38410 (17) | 0.0688 (6) | |
| H2 | 0.389 (5) | 0.752 (2) | 0.4186 (18) | 0.083* | |
| C3 | 0.3199 (4) | 0.7142 (4) | 0.3037 (2) | 0.0845 (9) | |
| H3A | 0.3768 | 0.6668 | 0.2594 | 0.101* | |
| H3B | 0.3303 | 0.8009 | 0.2889 | 0.101* | |
| C4 | 0.1361 (4) | 0.6803 (3) | 0.30448 (19) | 0.0750 (8) | |
| H4A | 0.1225 | 0.5952 | 0.3248 | 0.090* | |
| C5 | 0.0534 (7) | 0.6947 (6) | 0.2172 (3) | 0.1303 (19) | |
| H5A | 0.1088 | 0.7591 | 0.1842 | 0.156* | |
| H5B | 0.0582 | 0.6180 | 0.1852 | 0.156* | |
| C6 | −0.1224 (7) | 0.7283 (7) | 0.2368 (3) | 0.146 (2) | |
| H6A | −0.1636 | 0.7898 | 0.1967 | 0.175* | |
| H6B | −0.1957 | 0.6563 | 0.2336 | 0.175* | |
| C7 | −0.1204 (6) | 0.7774 (6) | 0.3230 (3) | 0.1225 (16) | |
| H7A | −0.1498 | 0.8644 | 0.3220 | 0.147* | |
| H7B | −0.2033 | 0.7344 | 0.3580 | 0.147* | |
| O8 | 0.0435 (3) | 0.7618 (2) | 0.35753 (14) | 0.0872 (7) | |
| N12 | 0.5602 (3) | 0.5888 (2) | 0.48261 (15) | 0.0677 (5) | |
| H12 | 0.541 (4) | 0.651 (2) | 0.5153 (17) | 0.081* | |
| C13 | 0.6525 (4) | 0.4849 (3) | 0.5184 (2) | 0.0796 (8) | |
| H13A | 0.5944 | 0.4092 | 0.5026 | 0.096* | |
| H13B | 0.6503 | 0.4911 | 0.5803 | 0.096* | |
| C14 | 0.8356 (3) | 0.4768 (2) | 0.48913 (18) | 0.0647 (6) | |
| H14A | 0.8394 | 0.4820 | 0.4265 | 0.078* | |
| C15 | 0.9260 (6) | 0.3588 (3) | 0.5178 (4) | 0.1075 (14) | |
| H15A | 0.8723 | 0.3243 | 0.5684 | 0.129* | |
| H15B | 0.9252 | 0.2972 | 0.4727 | 0.129* | |
| C16 | 1.0986 (6) | 0.3991 (4) | 0.5365 (4) | 0.1293 (18) | |
| H16A | 1.1421 | 0.3569 | 0.5867 | 0.155* | |
| H16B | 1.1731 | 0.3815 | 0.4885 | 0.155* | |
| C17 | 1.0897 (5) | 0.5297 (5) | 0.5515 (4) | 0.132 (2) | |
| H17A | 1.1046 | 0.5465 | 0.6121 | 0.158* | |
| H17B | 1.1801 | 0.5711 | 0.5205 | 0.158* | |
| O18 | 0.9296 (3) | 0.57528 (19) | 0.52400 (18) | 0.0850 (7) |
| S1 | 0.0894 (5) | 0.0744 (4) | 0.1029 (6) | 0.0133 (4) | −0.0215 (5) | −0.0363 (4) |
| C1 | 0.0455 (10) | 0.0558 (11) | 0.0733 (14) | −0.0014 (10) | 0.0034 (11) | −0.0067 (10) |
| N2 | 0.0585 (12) | 0.0615 (12) | 0.0864 (15) | 0.0100 (10) | −0.0053 (11) | −0.0065 (11) |
| C3 | 0.0738 (18) | 0.098 (2) | 0.0813 (18) | 0.0236 (18) | 0.0124 (15) | 0.0169 (17) |
| C4 | 0.0749 (18) | 0.0776 (17) | 0.0724 (16) | 0.0170 (15) | −0.0110 (14) | −0.0098 (14) |
| C5 | 0.117 (3) | 0.194 (5) | 0.081 (2) | 0.061 (4) | −0.026 (2) | −0.034 (3) |
| C6 | 0.114 (4) | 0.217 (6) | 0.107 (3) | 0.064 (4) | −0.045 (3) | −0.035 (4) |
| C7 | 0.075 (2) | 0.160 (4) | 0.133 (4) | 0.036 (3) | −0.009 (2) | −0.030 (3) |
| O8 | 0.0645 (11) | 0.1192 (17) | 0.0778 (12) | 0.0116 (11) | 0.0004 (10) | −0.0262 (11) |
| N12 | 0.0551 (11) | 0.0755 (13) | 0.0725 (13) | −0.0009 (10) | −0.0071 (10) | −0.0105 (11) |
| C13 | 0.0672 (15) | 0.0860 (19) | 0.0856 (18) | −0.0126 (14) | −0.0081 (14) | 0.0201 (16) |
| C14 | 0.0654 (13) | 0.0590 (13) | 0.0698 (14) | 0.0061 (11) | −0.0113 (11) | −0.0025 (12) |
| C15 | 0.107 (3) | 0.0628 (16) | 0.153 (4) | 0.0133 (17) | −0.039 (3) | 0.004 (2) |
| C16 | 0.096 (3) | 0.104 (3) | 0.188 (5) | 0.032 (2) | −0.051 (3) | −0.006 (3) |
| C17 | 0.0660 (19) | 0.128 (4) | 0.201 (5) | 0.005 (2) | −0.030 (3) | −0.052 (4) |
| O18 | 0.0640 (11) | 0.0632 (10) | 0.1278 (18) | −0.0006 (9) | −0.0082 (12) | −0.0171 (11) |
| S1—C1 | 1.675 (2) | C7—H7B | 0.97 |
| C1—N12 | 1.342 (3) | N12—C13 | 1.450 (4) |
| C1—N2 | 1.346 (3) | N12—H12 | 0.862 (10) |
| N2—C3 | 1.442 (4) | C13—C14 | 1.513 (4) |
| N2—H2 | 0.849 (10) | C13—H13A | 0.97 |
| C3—C4 | 1.490 (5) | C13—H13B | 0.97 |
| C3—H3A | 0.97 | C14—O18 | 1.407 (3) |
| C3—H3B | 0.97 | C14—C15 | 1.529 (4) |
| C4—O8 | 1.413 (4) | C14—H14A | 0.98 |
| C4—C5 | 1.519 (5) | C15—C16 | 1.454 (7) |
| C4—H4A | 0.98 | C15—H15A | 0.97 |
| C5—C6 | 1.461 (7) | C15—H15B | 0.97 |
| C5—H5A | 0.97 | C16—C17 | 1.436 (6) |
| C5—H5B | 0.97 | C16—H16A | 0.97 |
| C6—C7 | 1.447 (6) | C16—H16B | 0.97 |
| C6—H6A | 0.97 | C17—O18 | 1.418 (5) |
| C6—H6B | 0.97 | C17—H17A | 0.97 |
| C7—O8 | 1.407 (5) | C17—H17B | 0.97 |
| C7—H7A | 0.97 | ||
| N12—C1—N2 | 114.8 (2) | C7—O8—C4 | 108.8 (3) |
| N12—C1—S1 | 122.69 (19) | C1—N12—C13 | 123.9 (2) |
| N2—C1—S1 | 122.5 (2) | C1—N12—H12 | 118 (2) |
| C1—N2—C3 | 124.6 (3) | C13—N12—H12 | 118 (2) |
| C1—N2—H2 | 124 (2) | N12—C13—C14 | 113.8 (2) |
| C3—N2—H2 | 111 (3) | N12—C13—H13A | 108.8 |
| N2—C3—C4 | 113.8 (3) | C14—C13—H13A | 108.8 |
| N2—C3—H3A | 108.8 | N12—C13—H13B | 108.8 |
| C4—C3—H3A | 108.8 | C14—C13—H13B | 108.8 |
| N2—C3—H3B | 108.8 | H13A—C13—H13B | 107.7 |
| C4—C3—H3B | 108.8 | O18—C14—C13 | 109.8 (2) |
| H3A—C3—H3B | 107.7 | O18—C14—C15 | 106.0 (2) |
| O8—C4—C3 | 110.5 (3) | C13—C14—C15 | 113.7 (3) |
| O8—C4—C5 | 104.0 (3) | O18—C14—H14A | 109.1 |
| C3—C4—C5 | 112.5 (4) | C13—C14—H14A | 109.1 |
| O8—C4—H4A | 109.9 | C15—C14—H14A | 109.1 |
| C3—C4—H4A | 109.9 | C16—C15—C14 | 104.0 (3) |
| C5—C4—H4A | 109.9 | C16—C15—H15A | 111.0 |
| C6—C5—C4 | 104.0 (4) | C14—C15—H15A | 111.0 |
| C6—C5—H5A | 111.0 | C16—C15—H15B | 111.0 |
| C4—C5—H5A | 111.0 | C14—C15—H15B | 111.0 |
| C6—C5—H5B | 111.0 | H15A—C15—H15B | 109.0 |
| C4—C5—H5B | 111.0 | C17—C16—C15 | 106.4 (4) |
| H5A—C5—H5B | 109.0 | C17—C16—H16A | 110.4 |
| C7—C6—C5 | 106.0 (4) | C15—C16—H16A | 110.4 |
| C7—C6—H6A | 110.5 | C17—C16—H16B | 110.4 |
| C5—C6—H6A | 110.5 | C15—C16—H16B | 110.4 |
| C7—C6—H6B | 110.5 | H16A—C16—H16B | 108.6 |
| C5—C6—H6B | 110.5 | O18—C17—C16 | 109.7 (4) |
| H6A—C6—H6B | 108.7 | O18—C17—H17A | 109.7 |
| O8—C7—C6 | 108.8 (3) | C16—C17—H17A | 109.7 |
| O8—C7—H7A | 109.9 | O18—C17—H17B | 109.7 |
| C6—C7—H7A | 109.9 | C16—C17—H17B | 109.7 |
| O8—C7—H7B | 109.9 | H17A—C17—H17B | 108.2 |
| C6—C7—H7B | 109.9 | C14—O18—C17 | 108.6 (3) |
| H7A—C7—H7B | 108.3 | ||
| N12—C1—N2—C3 | 178.2 (3) | N2—C1—N12—C13 | 179.6 (2) |
| S1—C1—N2—C3 | −2.2 (4) | S1—C1—N12—C13 | 0.0 (4) |
| C1—N2—C3—C4 | 91.0 (4) | C1—N12—C13—C14 | 84.0 (3) |
| N2—C3—C4—O8 | 68.5 (4) | N12—C13—C14—O18 | 68.7 (3) |
| N2—C3—C4—C5 | −175.7 (3) | N12—C13—C14—C15 | −172.8 (3) |
| O8—C4—C5—C6 | −28.9 (6) | O18—C14—C15—C16 | −22.6 (5) |
| C3—C4—C5—C6 | −148.5 (5) | C13—C14—C15—C16 | −143.3 (4) |
| C4—C5—C6—C7 | 21.4 (7) | C14—C15—C16—C17 | 21.4 (7) |
| C5—C6—C7—O8 | −6.3 (7) | C15—C16—C17—O18 | −13.3 (8) |
| C6—C7—O8—C4 | −12.9 (6) | C13—C14—O18—C17 | 138.2 (4) |
| C3—C4—O8—C7 | 146.8 (4) | C15—C14—O18—C17 | 15.0 (5) |
| C5—C4—O8—C7 | 25.9 (5) | C16—C17—O18—C14 | −1.6 (7) |
| H··· | ||||
| N2—H2···O18i | 0.85 (1) | 2.10 (2) | 2.897 (3) | 157 (3) |
| N12—H12···O8ii | 0.86 (1) | 2.20 (2) | 2.978 (3) | 150 (3) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N2—H2⋯O18i | 0.85 (1) | 2.095 (17) | 2.897 (3) | 157 (3) |
| N12—H12⋯O8ii | 0.86 (1) | 2.197 (18) | 2.978 (3) | 150 (3) |
Symmetry codes: (i) ; (ii) .