Literature DB >> 21581702

1-(Phthalimidometh-yl)pyridinium p-toluene-sulfonate.

Mark Daniel Bartholomä1, Wayne Ouellette, Jon Zubieta.   

Abstract

In the crystal of the title compound, C(14)H(11)N(2)O(2) (+)·C(7)H(7)O(3)S(-), the cation and anion inter-act by way of an aromatic π-π inter-action [centroid-centroid separation = 3.5783 (2) Å] and a T-stacking (C-H⋯π) inter-action between cations. The dihedral angle between the aromatic rings in the cation is 61.73 (8)°. The ionic units are aligned in a zigzag fashion in the b-axis direction.

Entities:  

Year:  2008        PMID: 21581702      PMCID: PMC2967974          DOI: 10.1107/S1600536808038816

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For medicinal background, see: Al-Madhoun et al. (2002 ▶); Arner & Eriksson (1995 ▶); Bello (1974 ▶); Celen et al. (2007 ▶); Eriksson et al. (2002 ▶); Wei et al. (2005 ▶); Welin et al. (2004 ▶).

Experimental

Crystal data

C14H11N2O2 +·C7H7O3S M = 410.43 Monoclinic, a = 7.6944 (5) Å b = 33.626 (2) Å c = 7.9426 (5) Å β = 116.416 (1)° V = 1840.5 (2) Å3 Z = 4 Mo Kα radiation μ = 0.21 mm−1 T = 90 (2) K 0.30 × 0.25 × 0.20 mm

Data collection

Bruker APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2008 ▶) T min = 0.939, T max = 0.958 19080 measured reflections 4482 independent reflections 3753 reflections with I > 2σ(I) R int = 0.049

Refinement

R[F 2 > 2σ(F 2)] = 0.054 wR(F 2) = 0.124 S = 1.12 4482 reflections 263 parameters H-atom parameters constrained Δρmax = 0.61 e Å−3 Δρmin = −0.38 e Å−3 Data collection: SMART (Bruker, 2002 ▶); cell refinement: SAINT (Bruker, 2002 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg & Putz (1999 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808038816/hb2840sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808038816/hb2840Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H11N2O2+·C7H7O3SF(000) = 856
Mr = 410.43Dx = 1.481 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3297 reflections
a = 7.6944 (5) Åθ = 2.4–26.4°
b = 33.626 (2) ŵ = 0.21 mm1
c = 7.9426 (5) ÅT = 90 K
β = 116.416 (1)°Block, colourless
V = 1840.5 (2) Å30.30 × 0.25 × 0.20 mm
Z = 4
Bruker APEX CCD diffractometer4482 independent reflections
Radiation source: fine-focus sealed tube3753 reflections with I > 2σ(I)
graphiteRint = 0.049
Detector resolution: 512 pixels mm-1θmax = 28.1°, θmin = 2.4°
ω scansh = −10→10
Absorption correction: multi-scan (SADABS; Sheldrick, 2008)k = −42→44
Tmin = 0.939, Tmax = 0.958l = −10→10
19080 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.054Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.124H-atom parameters constrained
S = 1.12w = 1/[σ2(Fo2) + (0.0508P)2 + 1.1529P] where P = (Fo2 + 2Fc2)/3
4482 reflections(Δ/σ)max < 0.001
263 parametersΔρmax = 0.61 e Å3
0 restraintsΔρmin = −0.38 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.71561 (7)0.151380 (15)0.83629 (7)0.01495 (13)
O11.0063 (2)0.07297 (5)0.3896 (2)0.0232 (3)
O20.4402 (2)0.01341 (5)0.3092 (2)0.0247 (4)
O30.8408 (2)0.15516 (5)0.7439 (2)0.0209 (3)
O40.6566 (2)0.11048 (4)0.8427 (2)0.0232 (3)
O50.7929 (2)0.17090 (5)1.0188 (2)0.0217 (3)
N10.7117 (2)0.05127 (5)0.3668 (2)0.0173 (4)
N20.5370 (2)0.11140 (5)0.3597 (2)0.0158 (4)
C10.8823 (3)0.04795 (6)0.3432 (3)0.0169 (4)
C20.8696 (3)0.00828 (6)0.2554 (3)0.0159 (4)
C30.9997 (3)−0.01049 (6)0.2060 (3)0.0191 (4)
H31.11660.00200.22190.023*
C40.9513 (3)−0.04884 (7)0.1314 (3)0.0228 (5)
H41.0367−0.06280.09520.027*
C50.7805 (3)−0.06681 (7)0.1096 (3)0.0239 (5)
H50.7523−0.09300.05980.029*
C60.6488 (3)−0.04768 (7)0.1584 (3)0.0217 (4)
H60.5315−0.06010.14230.026*
C70.6972 (3)−0.00982 (6)0.2314 (3)0.0170 (4)
C80.5931 (3)0.01743 (6)0.3028 (3)0.0179 (4)
C90.6823 (3)0.08173 (6)0.4785 (3)0.0204 (4)
H9A0.80710.09530.55470.025*
H9B0.63790.06940.56570.025*
C100.3571 (3)0.11045 (6)0.3473 (3)0.0177 (4)
H100.32450.09100.41500.021*
C110.2198 (3)0.13761 (6)0.2367 (3)0.0182 (4)
H110.09170.13670.22570.022*
C120.2708 (3)0.16635 (6)0.1417 (3)0.0193 (4)
H120.17810.18550.06570.023*
C130.4584 (3)0.16703 (6)0.1581 (3)0.0192 (4)
H130.49520.18670.09420.023*
C140.5902 (3)0.13900 (6)0.2678 (3)0.0185 (4)
H140.71840.13900.27900.022*
C150.4978 (3)0.17744 (6)0.6922 (3)0.0147 (4)
C160.3230 (3)0.16559 (6)0.6887 (3)0.0170 (4)
H160.31960.14300.75910.020*
C170.1535 (3)0.18648 (6)0.5831 (3)0.0180 (4)
H170.03550.17830.58320.022*
C180.1543 (3)0.21947 (6)0.4764 (3)0.0169 (4)
C19−0.0316 (3)0.24117 (7)0.3577 (3)0.0221 (5)
H19A−0.00260.26520.30490.033*
H19B−0.09570.24860.43570.033*
H19C−0.11760.22380.25530.033*
C200.3304 (3)0.23071 (6)0.4797 (3)0.0184 (4)
H200.33360.25290.40690.022*
C210.5012 (3)0.21025 (6)0.5872 (3)0.0167 (4)
H210.61980.21860.58890.020*
U11U22U33U12U13U23
S10.0132 (2)0.0163 (2)0.0136 (2)−0.00043 (18)0.00446 (18)−0.00117 (18)
O10.0220 (8)0.0201 (8)0.0253 (8)−0.0060 (6)0.0086 (7)−0.0012 (6)
O20.0170 (7)0.0361 (9)0.0229 (8)−0.0006 (7)0.0105 (6)0.0016 (7)
O30.0184 (7)0.0250 (8)0.0212 (8)0.0008 (6)0.0106 (6)−0.0010 (6)
O40.0203 (8)0.0182 (8)0.0288 (8)−0.0001 (6)0.0087 (7)0.0030 (6)
O50.0183 (7)0.0290 (8)0.0130 (7)0.0020 (6)0.0027 (6)−0.0037 (6)
N10.0168 (8)0.0177 (9)0.0160 (8)0.0022 (7)0.0060 (7)0.0003 (7)
N20.0154 (8)0.0182 (8)0.0110 (8)0.0043 (7)0.0035 (7)−0.0007 (6)
C10.0165 (10)0.0187 (10)0.0135 (9)0.0029 (8)0.0049 (8)0.0032 (7)
C20.0181 (10)0.0150 (9)0.0120 (9)0.0015 (8)0.0044 (8)0.0032 (7)
C30.0207 (10)0.0221 (11)0.0144 (10)0.0022 (8)0.0077 (8)0.0034 (8)
C40.0315 (12)0.0237 (11)0.0137 (10)0.0088 (9)0.0105 (9)0.0037 (8)
C50.0371 (13)0.0169 (10)0.0133 (10)−0.0018 (9)0.0074 (9)0.0002 (8)
C60.0262 (11)0.0208 (11)0.0149 (10)−0.0056 (9)0.0063 (9)0.0012 (8)
C70.0158 (9)0.0192 (10)0.0132 (9)0.0000 (8)0.0041 (8)0.0036 (7)
C80.0167 (10)0.0220 (10)0.0119 (9)0.0004 (8)0.0036 (8)0.0047 (8)
C90.0212 (10)0.0241 (11)0.0129 (9)0.0076 (8)0.0047 (8)0.0020 (8)
C100.0193 (10)0.0194 (10)0.0144 (9)−0.0002 (8)0.0076 (8)−0.0026 (8)
C110.0148 (9)0.0223 (10)0.0149 (10)0.0009 (8)0.0044 (8)−0.0050 (8)
C120.0198 (10)0.0186 (10)0.0142 (10)0.0044 (8)0.0026 (8)−0.0026 (8)
C130.0247 (11)0.0171 (10)0.0152 (10)0.0006 (8)0.0083 (8)0.0006 (8)
C140.0177 (10)0.0207 (10)0.0163 (10)−0.0010 (8)0.0068 (8)−0.0031 (8)
C150.0139 (9)0.0166 (9)0.0102 (9)0.0000 (7)0.0022 (7)−0.0026 (7)
C160.0199 (10)0.0185 (10)0.0123 (9)−0.0001 (8)0.0068 (8)0.0001 (7)
C170.0163 (9)0.0213 (10)0.0158 (10)0.0002 (8)0.0067 (8)−0.0027 (8)
C180.0205 (10)0.0159 (9)0.0107 (9)0.0013 (8)0.0038 (8)−0.0042 (7)
C190.0207 (11)0.0228 (11)0.0184 (10)0.0049 (8)0.0047 (9)−0.0019 (8)
C200.0233 (10)0.0155 (10)0.0139 (9)−0.0002 (8)0.0061 (8)−0.0010 (7)
C210.0162 (9)0.0188 (10)0.0134 (9)−0.0037 (8)0.0050 (8)−0.0035 (7)
S1—O31.4531 (15)C9—H9B0.9900
S1—O51.4556 (15)C10—C111.377 (3)
S1—O41.4562 (16)C10—H100.9500
S1—C151.783 (2)C11—C121.386 (3)
O1—C11.201 (3)C11—H110.9500
O2—C81.208 (2)C12—C131.391 (3)
N1—C81.405 (3)C12—H120.9500
N1—C11.410 (3)C13—C141.375 (3)
N1—C91.437 (3)C13—H130.9500
N2—C101.343 (3)C14—H140.9500
N2—C141.352 (3)C15—C211.390 (3)
N2—C91.482 (3)C15—C161.391 (3)
C1—C21.488 (3)C16—C171.387 (3)
C2—C31.380 (3)C16—H160.9500
C2—C71.393 (3)C17—C181.397 (3)
C3—C41.399 (3)C17—H170.9500
C3—H30.9500C18—C201.396 (3)
C4—C51.386 (3)C18—C191.506 (3)
C4—H40.9500C19—H19A0.9800
C5—C61.393 (3)C19—H19B0.9800
C5—H50.9500C19—H19C0.9800
C6—C71.380 (3)C20—C211.390 (3)
C6—H60.9500C20—H200.9500
C7—C81.486 (3)C21—H210.9500
C9—H9A0.9900
O3—S1—O5113.25 (9)H9A—C9—H9B108.0
O3—S1—O4112.78 (9)N2—C10—C11120.30 (19)
O5—S1—O4112.75 (10)N2—C10—H10119.8
O3—S1—C15106.13 (9)C11—C10—H10119.8
O5—S1—C15105.58 (9)C10—C11—C12119.12 (19)
O4—S1—C15105.53 (9)C10—C11—H11120.4
C8—N1—C1112.38 (17)C12—C11—H11120.4
C8—N1—C9123.06 (18)C11—C12—C13119.60 (19)
C1—N1—C9123.35 (18)C11—C12—H12120.2
C10—N2—C14121.75 (18)C13—C12—H12120.2
C10—N2—C9119.46 (18)C14—C13—C12119.4 (2)
C14—N2—C9118.78 (17)C14—C13—H13120.3
O1—C1—N1124.31 (19)C12—C13—H13120.3
O1—C1—C2130.5 (2)N2—C14—C13119.82 (19)
N1—C1—C2105.22 (17)N2—C14—H14120.1
C3—C2—C7121.9 (2)C13—C14—H14120.1
C3—C2—C1129.71 (19)C21—C15—C16119.42 (18)
C7—C2—C1108.40 (18)C21—C15—S1120.78 (15)
C2—C3—C4116.9 (2)C16—C15—S1119.78 (15)
C2—C3—H3121.6C17—C16—C15120.50 (19)
C4—C3—H3121.6C17—C16—H16119.8
C5—C4—C3120.9 (2)C15—C16—H16119.8
C5—C4—H4119.5C16—C17—C18120.81 (19)
C3—C4—H4119.5C16—C17—H17119.6
C4—C5—C6122.1 (2)C18—C17—H17119.6
C4—C5—H5119.0C20—C18—C17118.02 (19)
C6—C5—H5119.0C20—C18—C19121.63 (19)
C7—C6—C5116.7 (2)C17—C18—C19120.33 (19)
C7—C6—H6121.7C18—C19—H19A109.5
C5—C6—H6121.7C18—C19—H19B109.5
C6—C7—C2121.6 (2)H19A—C19—H19B109.5
C6—C7—C8129.7 (2)C18—C19—H19C109.5
C2—C7—C8108.70 (18)H19A—C19—H19C109.5
O2—C8—N1124.3 (2)H19B—C19—H19C109.5
O2—C8—C7130.4 (2)C21—C20—C18121.47 (19)
N1—C8—C7105.31 (17)C21—C20—H20119.3
N1—C9—N2111.61 (16)C18—C20—H20119.3
N1—C9—H9A109.3C20—C21—C15119.78 (19)
N2—C9—H9A109.3C20—C21—H21120.1
N1—C9—H9B109.3C15—C21—H21120.1
N2—C9—H9B109.3
C8—N1—C1—O1−179.12 (19)C1—N1—C9—N2108.7 (2)
C9—N1—C1—O1−11.4 (3)C10—N2—C9—N1104.0 (2)
C8—N1—C1—C20.2 (2)C14—N2—C9—N1−76.5 (2)
C9—N1—C1—C2167.94 (17)C14—N2—C10—C111.0 (3)
O1—C1—C2—C30.9 (4)C9—N2—C10—C11−179.58 (18)
N1—C1—C2—C3−178.3 (2)N2—C10—C11—C12−1.3 (3)
O1—C1—C2—C7179.2 (2)C10—C11—C12—C130.6 (3)
N1—C1—C2—C7−0.1 (2)C11—C12—C13—C140.4 (3)
C7—C2—C3—C4−0.4 (3)C10—N2—C14—C130.0 (3)
C1—C2—C3—C4177.63 (19)C9—N2—C14—C13−179.44 (18)
C2—C3—C4—C5−0.2 (3)C12—C13—C14—N2−0.7 (3)
C3—C4—C5—C60.7 (3)O3—S1—C15—C21−30.90 (19)
C4—C5—C6—C7−0.5 (3)O5—S1—C15—C2189.57 (17)
C5—C6—C7—C2−0.2 (3)O4—S1—C15—C21−150.81 (16)
C5—C6—C7—C8−177.4 (2)O3—S1—C15—C16150.97 (16)
C3—C2—C7—C60.6 (3)O5—S1—C15—C16−88.55 (17)
C1—C2—C7—C6−177.78 (19)O4—S1—C15—C1631.06 (19)
C3—C2—C7—C8178.36 (18)C21—C15—C16—C17−0.7 (3)
C1—C2—C7—C8−0.1 (2)S1—C15—C16—C17177.49 (15)
C1—N1—C8—O2179.69 (19)C15—C16—C17—C180.8 (3)
C9—N1—C8—O211.9 (3)C16—C17—C18—C20−0.1 (3)
C1—N1—C8—C7−0.2 (2)C16—C17—C18—C19178.17 (19)
C9—N1—C8—C7−168.02 (17)C17—C18—C20—C21−0.8 (3)
C6—C7—C8—O2−2.3 (4)C19—C18—C20—C21−179.02 (19)
C2—C7—C8—O2−179.7 (2)C18—C20—C21—C151.0 (3)
C6—C7—C8—N1177.6 (2)C16—C15—C21—C20−0.2 (3)
C2—C7—C8—N10.2 (2)S1—C15—C21—C20−178.34 (15)
C8—N1—C9—N2−84.8 (2)
D—H···AD—HH···AD···AD—H···A
C5—H5···Cg1i0.952.703.531 (2)147
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C5—H5⋯Cg1i0.952.703.531 (2)147

Symmetry code: (i) . Cg1 is the centroid of the N2/C10–C14 ring.

  8 in total

Review 1.  Structure and function of cellular deoxyribonucleoside kinases.

Authors:  S Eriksson; B Munch-Petersen; K Johansson; H Eklund
Journal:  Cell Mol Life Sci       Date:  2002-08       Impact factor: 9.261

2.  Structures of thymidine kinase 1 of human and mycoplasmic origin.

Authors:  Martin Welin; Urszula Kosinska; Nils-Egil Mikkelsen; Cecilia Carnrot; Chunying Zhu; Liya Wang; Staffan Eriksson; Birgitte Munch-Petersen; Hans Eklund
Journal:  Proc Natl Acad Sci U S A       Date:  2004-12-20       Impact factor: 11.205

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  Regulation of thymidine kinase synthesis in human cells.

Authors:  L J Bello
Journal:  Exp Cell Res       Date:  1974-12       Impact factor: 3.905

5.  Rhenium tricarbonyl core complexes of thymidine and uridine derivatives.

Authors:  Lihui Wei; John Babich; William C Eckelman; Jon Zubieta
Journal:  Inorg Chem       Date:  2005-04-04       Impact factor: 5.165

6.  Synthesis and evaluation of a (99m)Tc-MAMA-propyl-thymidine complex as a potential probe for in vivo visualization of tumor cell proliferation with SPECT.

Authors:  Sofie Celen; Tjibbe de Groot; Jan Balzarini; Kathleen Vunckx; Christelle Terwinghe; Peter Vermaelen; Lizette Van Berckelaer; Hubert Vanbilloen; Johan Nuyts; Luc Mortelmans; Alfons Verbruggen; Guy Bormans
Journal:  Nucl Med Biol       Date:  2007-04       Impact factor: 2.408

7.  Synthesis of a small library of 3-(carboranylalkyl)thymidines and their biological evaluation as substrates for human thymidine kinases 1 and 2.

Authors:  Ashraf S Al-Madhoun; Jayaseharan Johnsamuel; Junhua Yan; Weihua Ji; Jianghai Wang; Jin-Cong Zhuo; Anthony J Lunato; Jeffrey E Woollard; Andrew E Hawk; Guirec Y Cosquer; Thomas E Blue; Staffan Eriksson; Werner Tjarks
Journal:  J Med Chem       Date:  2002-08-29       Impact factor: 7.446

Review 8.  Mammalian deoxyribonucleoside kinases.

Authors:  E S Arnér; S Eriksson
Journal:  Pharmacol Ther       Date:  1995       Impact factor: 12.310

  8 in total
  1 in total

1.  Dicarbonyl-chlorido(phen-oxy-thio-carbonyl-κC,S)bis-(triphenyl-phosphane-κP)molybdenum(II).

Authors:  Gene-Hsiang Lee; Hsiao-Fen Wang; Kuang-Hway Yih; Shou-Ling Huang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-12-24
  1 in total

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