Literature DB >> 21581692

Ethyl {6-[6-(ethoxy-carbon-yl)picolin-amido-carbon-yl]picolinamido-carbon-yl}picolinate.

Xiao Li1, Yaobing Wang, Chuanlang Zhan, Jiannian Yao.   

Abstract

The title mol-ecule, C(25)H(21)N(5)O(8), adopts a helical conformation, which is stabilized by two intra-molecular bifurcated N-H⋯(N,N) hydrogen bonds.

Entities:  

Year:  2008        PMID: 21581692      PMCID: PMC2967965          DOI: 10.1107/S1600536808040932

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a review on aromatic oligoamides (AOAs), see, for example: Huc (2004 ▶). For related compounds, see: Li et al. (2008 ▶).

Experimental

Crystal data

C25H21N5O8 M = 519.47 Monoclinic, a = 7.4952 (8) Å b = 19.998 (2) Å c = 15.9966 (17) Å β = 96.376 (1)° V = 2382.8 (4) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 113 (2) K 0.32 × 0.22 × 0.18 mm

Data collection

Rigaku Saturn diffractometer Absorption correction: multi-scan (CrystalcClear; Rigaku, 1999 ▶) T min = 0.966, T max = 0.980 30537 measured reflections 6101 independent reflections 5457 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.096 S = 1.08 6101 reflections 354 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.32 e Å−3 Δρmin = −0.17 e Å−3 Data collection: CrystalClear (Rigaku, 1999 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: CrystalStructure (Rigaku, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808040932/hb2864sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808040932/hb2864Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C25H21N5O8F(000) = 1080
Mr = 519.47Dx = 1.448 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71070 Å
Hall symbol: -P 2ybcCell parameters from 6439 reflections
a = 7.4952 (8) Åθ = 2.6–26.0°
b = 19.998 (2) ŵ = 0.11 mm1
c = 15.9966 (17) ÅT = 113 K
β = 96.376 (1)°Prism, colorless
V = 2382.8 (4) Å30.32 × 0.22 × 0.18 mm
Z = 4
Rigaku Saturn diffractometer6101 independent reflections
Radiation source: rotating anode5457 reflections with I > 2σ(I)
confocalRint = 0.025
Detector resolution: 7.31 pixels mm-1θmax = 28.7°, θmin = 2.4°
ω scansh = −10→10
Absorption correction: multi-scan (CrystalcClear; Rigaku, 1999)k = −27→24
Tmin = 0.966, Tmax = 0.980l = −21→21
30537 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.037Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.096H atoms treated by a mixture of independent and constrained refinement
S = 1.08w = 1/[σ2(Fo2) + (0.0481P)2 + 0.4996P] where P = (Fo2 + 2Fc2)/3
6101 reflections(Δ/σ)max = 0.001
354 parametersΔρmax = 0.32 e Å3
0 restraintsΔρmin = −0.17 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O1−0.13320 (11)0.87694 (4)0.72665 (5)0.02977 (17)
O20.06124 (11)0.85871 (4)0.63149 (5)0.02910 (17)
O3−0.16781 (12)0.59423 (4)0.88294 (6)0.0395 (2)
O4−0.33384 (11)0.65393 (4)1.02334 (5)0.03521 (19)
O5−0.24510 (13)0.99672 (4)0.94666 (5)0.0397 (2)
O60.08420 (13)1.00415 (4)0.86648 (5)0.0391 (2)
O70.21781 (10)0.70449 (4)0.93765 (4)0.02615 (16)
O80.37042 (9)0.67410 (4)0.82982 (4)0.02587 (16)
N1−0.10247 (10)0.74283 (4)0.76977 (5)0.02135 (16)
N2−0.21026 (12)0.70511 (4)0.91366 (5)0.02446 (18)
N3−0.25843 (11)0.82284 (4)0.97648 (5)0.02253 (17)
N4−0.04508 (12)0.91296 (4)0.92339 (5)0.02641 (18)
N50.20551 (11)0.83332 (4)0.87730 (5)0.02099 (16)
C1−0.04508 (13)0.83975 (5)0.68831 (6)0.02336 (19)
C2−0.03851 (12)0.76501 (5)0.70001 (6)0.02167 (19)
C30.02896 (13)0.72245 (5)0.64172 (6)0.0245 (2)
H30.07640.74000.59360.029*
C40.02507 (13)0.65399 (5)0.65576 (6)0.0264 (2)
H4A0.06570.62370.61620.032*
C5−0.03894 (13)0.63047 (5)0.72829 (7)0.0262 (2)
H5−0.04190.58390.73980.031*
C6−0.09874 (12)0.67674 (5)0.78370 (6)0.02280 (19)
C7−0.16141 (13)0.65290 (5)0.86502 (7)0.0260 (2)
C8−0.29462 (13)0.70359 (5)0.98611 (6)0.0248 (2)
C9−0.34013 (13)0.77315 (5)1.01301 (6)0.0241 (2)
C10−0.46393 (14)0.78407 (7)1.07012 (7)0.0334 (2)
H10−0.51800.74781.09610.040*
C11−0.50571 (15)0.84953 (7)1.08782 (8)0.0400 (3)
H11−0.59040.85881.12630.048*
C12−0.42408 (15)0.90164 (6)1.04950 (7)0.0353 (3)
H12−0.45300.94681.06030.042*
C13−0.29831 (14)0.88586 (5)0.99470 (6)0.0263 (2)
C14−0.19693 (15)0.93888 (5)0.95273 (6)0.0287 (2)
C150.08115 (15)0.94475 (5)0.88163 (6)0.0272 (2)
C160.22015 (13)0.89727 (5)0.85479 (6)0.0240 (2)
C170.35075 (15)0.92050 (6)0.80694 (7)0.0318 (2)
H170.35870.96670.79390.038*
C180.46885 (15)0.87489 (6)0.77877 (8)0.0350 (3)
H180.56030.88920.74620.042*
C190.45178 (14)0.80778 (6)0.79891 (7)0.0290 (2)
H190.52860.77510.77880.035*
C200.31961 (12)0.78940 (5)0.84913 (6)0.02153 (19)
C210.29545 (12)0.71868 (5)0.87815 (6)0.02146 (19)
C220.06263 (18)0.92999 (5)0.61175 (7)0.0342 (2)
H22A0.08270.95680.66400.041*
H22B−0.05320.94350.58060.041*
C230.2126 (2)0.94046 (6)0.55884 (9)0.0482 (4)
H23A0.32670.92820.59120.072*
H23B0.21630.98760.54230.072*
H23C0.19310.91240.50840.072*
C240.35652 (15)0.60428 (5)0.85650 (7)0.0275 (2)
H24A0.23150.59410.86660.033*
H24B0.43560.59650.90940.033*
C250.41238 (17)0.56010 (6)0.78771 (7)0.0352 (2)
H25A0.32900.56620.73660.053*
H25B0.41040.51330.80560.053*
H25C0.53410.57210.77620.053*
H4−0.0313 (18)0.8692 (7)0.9284 (8)0.036 (4)*
H2−0.1908 (19)0.7449 (8)0.8932 (9)0.040 (4)*
U11U22U33U12U13U23
O10.0356 (4)0.0277 (4)0.0269 (4)0.0077 (3)0.0077 (3)−0.0011 (3)
O20.0378 (4)0.0242 (4)0.0268 (4)0.0026 (3)0.0104 (3)0.0007 (3)
O30.0507 (5)0.0201 (4)0.0503 (5)−0.0036 (3)0.0176 (4)0.0003 (3)
O40.0350 (4)0.0360 (4)0.0355 (4)−0.0062 (3)0.0075 (3)0.0099 (3)
O50.0549 (5)0.0247 (4)0.0386 (5)0.0185 (4)0.0005 (4)−0.0020 (3)
O60.0650 (6)0.0165 (4)0.0358 (4)−0.0003 (4)0.0059 (4)0.0058 (3)
O70.0308 (4)0.0222 (4)0.0266 (4)0.0031 (3)0.0085 (3)0.0035 (3)
O80.0267 (4)0.0239 (4)0.0280 (4)0.0045 (3)0.0076 (3)0.0009 (3)
N10.0193 (4)0.0215 (4)0.0231 (4)−0.0004 (3)0.0013 (3)−0.0035 (3)
N20.0272 (4)0.0203 (4)0.0269 (4)−0.0018 (3)0.0075 (3)0.0004 (3)
N30.0231 (4)0.0256 (4)0.0186 (4)0.0055 (3)0.0007 (3)−0.0008 (3)
N40.0374 (5)0.0147 (4)0.0277 (4)0.0050 (3)0.0059 (3)0.0009 (3)
N50.0218 (4)0.0188 (4)0.0218 (4)−0.0021 (3)−0.0004 (3)0.0022 (3)
C10.0249 (5)0.0267 (5)0.0179 (4)0.0022 (4)0.0001 (3)−0.0014 (3)
C20.0187 (4)0.0245 (5)0.0211 (4)0.0011 (3)−0.0011 (3)−0.0036 (3)
C30.0209 (4)0.0301 (5)0.0218 (4)0.0016 (4)0.0001 (3)−0.0058 (4)
C40.0223 (4)0.0286 (5)0.0278 (5)0.0021 (4)−0.0002 (4)−0.0109 (4)
C50.0234 (5)0.0220 (5)0.0325 (5)−0.0012 (4)0.0005 (4)−0.0084 (4)
C60.0194 (4)0.0218 (5)0.0269 (5)−0.0022 (3)0.0013 (3)−0.0053 (4)
C70.0241 (5)0.0208 (5)0.0334 (5)−0.0028 (4)0.0052 (4)−0.0024 (4)
C80.0197 (4)0.0309 (5)0.0239 (5)−0.0021 (4)0.0020 (3)0.0026 (4)
C90.0190 (4)0.0340 (5)0.0189 (4)0.0008 (4)0.0009 (3)−0.0006 (4)
C100.0233 (5)0.0522 (7)0.0254 (5)−0.0044 (5)0.0061 (4)−0.0067 (5)
C110.0255 (5)0.0603 (8)0.0357 (6)0.0018 (5)0.0099 (4)−0.0177 (6)
C120.0280 (5)0.0441 (7)0.0332 (6)0.0112 (5)0.0014 (4)−0.0141 (5)
C130.0260 (5)0.0299 (5)0.0218 (4)0.0099 (4)−0.0017 (4)−0.0048 (4)
C140.0375 (6)0.0245 (5)0.0231 (5)0.0103 (4)−0.0013 (4)−0.0029 (4)
C150.0412 (6)0.0179 (4)0.0219 (4)−0.0010 (4)0.0004 (4)0.0022 (3)
C160.0281 (5)0.0200 (5)0.0230 (4)−0.0040 (4)−0.0017 (4)0.0036 (3)
C170.0330 (5)0.0279 (5)0.0338 (5)−0.0085 (4)0.0005 (4)0.0108 (4)
C180.0250 (5)0.0423 (7)0.0383 (6)−0.0051 (4)0.0060 (4)0.0166 (5)
C190.0203 (4)0.0365 (6)0.0304 (5)0.0028 (4)0.0040 (4)0.0096 (4)
C200.0183 (4)0.0236 (5)0.0220 (4)0.0000 (3)−0.0007 (3)0.0037 (3)
C210.0180 (4)0.0229 (5)0.0229 (4)0.0024 (3)0.0001 (3)0.0015 (3)
C220.0510 (7)0.0238 (5)0.0287 (5)0.0041 (5)0.0082 (5)0.0031 (4)
C230.0808 (10)0.0273 (6)0.0419 (7)−0.0084 (6)0.0309 (7)−0.0045 (5)
C240.0320 (5)0.0221 (5)0.0288 (5)0.0063 (4)0.0056 (4)0.0017 (4)
C250.0420 (6)0.0298 (6)0.0350 (6)0.0093 (5)0.0095 (5)−0.0033 (4)
O1—C11.2064 (12)C8—C91.5063 (15)
O2—C11.3289 (12)C9—C101.3898 (14)
O2—C221.4603 (13)C10—C111.3825 (18)
O3—C71.2100 (13)C10—H100.9500
O4—C81.2109 (13)C11—C121.3854 (19)
O5—C141.2123 (13)C11—H110.9500
O6—C151.2131 (13)C12—C131.3930 (15)
O7—C211.2034 (12)C12—H120.9500
O8—C211.3434 (12)C13—C141.5052 (16)
O8—C241.4671 (12)C15—C161.5068 (15)
N1—C21.3382 (13)C16—C171.3880 (15)
N1—C61.3401 (13)C17—C181.3809 (17)
N2—C71.3760 (13)C17—H170.9500
N2—C81.3809 (13)C18—C191.3893 (16)
N2—H20.878 (15)C18—H180.9500
N3—C131.3348 (13)C19—C201.3924 (14)
N3—C91.3354 (13)C19—H190.9500
N4—C151.3732 (14)C20—C211.5057 (13)
N4—C141.3796 (14)C22—C231.4949 (18)
N4—H40.885 (14)C22—H22A0.9900
N5—C161.3364 (12)C22—H22B0.9900
N5—C201.3384 (13)C23—H23A0.9800
C1—C21.5064 (14)C23—H23B0.9800
C2—C31.3979 (13)C23—H23C0.9800
C3—C41.3882 (15)C24—C251.5064 (14)
C3—H30.9500C24—H24A0.9900
C4—C51.3859 (15)C24—H24B0.9900
C4—H4A0.9500C25—H25A0.9800
C5—C61.3895 (14)C25—H25B0.9800
C5—H50.9500C25—H25C0.9800
C6—C71.5086 (14)
C1—O2—C22116.47 (8)C12—C13—C14122.10 (10)
C21—O8—C24114.60 (8)O5—C14—N4125.50 (11)
C2—N1—C6117.56 (8)O5—C14—C13123.18 (10)
C7—N2—C8129.30 (9)N4—C14—C13111.32 (8)
C7—N2—H2114.2 (9)O6—C15—N4125.43 (11)
C8—N2—H2116.3 (9)O6—C15—C16122.08 (10)
C13—N3—C9118.83 (9)N4—C15—C16112.49 (8)
C15—N4—C14129.10 (9)N5—C16—C17123.57 (10)
C15—N4—H4115.0 (9)N5—C16—C15116.50 (9)
C14—N4—H4115.7 (9)C17—C16—C15119.90 (9)
C16—N5—C20117.56 (9)C18—C17—C16118.41 (10)
O1—C1—O2125.14 (10)C18—C17—H17120.8
O1—C1—C2124.11 (9)C16—C17—H17120.8
O2—C1—C2110.75 (8)C17—C18—C19118.91 (10)
N1—C2—C3122.96 (9)C17—C18—H18120.5
N1—C2—C1114.99 (8)C19—C18—H18120.5
C3—C2—C1122.04 (9)C18—C19—C20118.59 (10)
C4—C3—C2118.48 (10)C18—C19—H19120.7
C4—C3—H3120.8C20—C19—H19120.7
C2—C3—H3120.8N5—C20—C19122.90 (9)
C5—C4—C3119.04 (9)N5—C20—C21114.16 (8)
C5—C4—H4A120.5C19—C20—C21122.92 (9)
C3—C4—H4A120.5O7—C21—O8124.66 (9)
C4—C5—C6118.31 (10)O7—C21—C20123.41 (9)
C4—C5—H5120.8O8—C21—C20111.94 (8)
C6—C5—H5120.8O2—C22—C23106.44 (9)
N1—C6—C5123.57 (9)O2—C22—H22A110.4
N1—C6—C7116.89 (8)C23—C22—H22A110.4
C5—C6—C7119.53 (9)O2—C22—H22B110.4
O3—C7—N2125.58 (10)C23—C22—H22B110.4
O3—C7—C6122.35 (9)H22A—C22—H22B108.6
N2—C7—C6112.06 (8)C22—C23—H23A109.5
O4—C8—N2126.13 (10)C22—C23—H23B109.5
O4—C8—C9122.81 (9)H23A—C23—H23B109.5
N2—C8—C9111.02 (8)C22—C23—H23C109.5
N3—C9—C10122.87 (10)H23A—C23—H23C109.5
N3—C9—C8115.64 (8)H23B—C23—H23C109.5
C10—C9—C8121.45 (10)O8—C24—C25108.13 (8)
C11—C10—C9117.80 (11)O8—C24—H24A110.1
C11—C10—H10121.1C25—C24—H24A110.1
C9—C10—H10121.1O8—C24—H24B110.1
C10—C11—C12120.02 (10)C25—C24—H24B110.1
C10—C11—H11120.0H24A—C24—H24B108.4
C12—C11—H11120.0C24—C25—H25A109.5
C11—C12—C13118.10 (11)C24—C25—H25B109.5
C11—C12—H12121.0H25A—C25—H25B109.5
C13—C12—H12121.0C24—C25—H25C109.5
N3—C13—C12122.34 (11)H25A—C25—H25C109.5
N3—C13—C14115.55 (9)H25B—C25—H25C109.5
C22—O2—C1—O1−3.25 (15)C9—N3—C13—C12−0.98 (14)
C22—O2—C1—C2177.85 (8)C9—N3—C13—C14178.44 (8)
C6—N1—C2—C30.73 (13)C11—C12—C13—N31.89 (16)
C6—N1—C2—C1−179.54 (8)C11—C12—C13—C14−177.48 (10)
O1—C1—C2—N1−15.36 (14)C15—N4—C14—O5−0.58 (18)
O2—C1—C2—N1163.55 (8)C15—N4—C14—C13179.72 (9)
O1—C1—C2—C3164.37 (10)N3—C13—C14—O5162.22 (10)
O2—C1—C2—C3−16.71 (12)C12—C13—C14—O5−18.36 (16)
N1—C2—C3—C41.73 (14)N3—C13—C14—N4−18.07 (12)
C1—C2—C3—C4−177.98 (8)C12—C13—C14—N4161.35 (9)
C2—C3—C4—C5−2.40 (14)C14—N4—C15—O63.77 (18)
C3—C4—C5—C60.72 (14)C14—N4—C15—C16−175.83 (9)
C2—N1—C6—C5−2.58 (14)C20—N5—C16—C17−2.57 (14)
C2—N1—C6—C7176.59 (8)C20—N5—C16—C15175.38 (8)
C4—C5—C6—N11.87 (15)O6—C15—C16—N5178.10 (10)
C4—C5—C6—C7−177.27 (9)N4—C15—C16—N5−2.29 (12)
C8—N2—C7—O3−8.40 (18)O6—C15—C16—C17−3.88 (15)
C8—N2—C7—C6170.93 (9)N4—C15—C16—C17175.74 (9)
N1—C6—C7—O3178.12 (10)N5—C16—C17—C182.05 (16)
C5—C6—C7—O3−2.68 (15)C15—C16—C17—C18−175.83 (10)
N1—C6—C7—N2−1.24 (12)C16—C17—C18—C190.37 (16)
C5—C6—C7—N2177.96 (9)C17—C18—C19—C20−2.07 (16)
C7—N2—C8—O44.13 (18)C16—N5—C20—C190.70 (14)
C7—N2—C8—C9−173.76 (9)C16—N5—C20—C21179.34 (8)
C13—N3—C9—C10−0.73 (14)C18—C19—C20—N51.58 (15)
C13—N3—C9—C8177.19 (8)C18—C19—C20—C21−176.94 (9)
O4—C8—C9—N3167.30 (9)C24—O8—C21—O7−1.92 (13)
N2—C8—C9—N3−14.72 (12)C24—O8—C21—C20178.12 (8)
O4—C8—C9—C10−14.75 (15)N5—C20—C21—O7−19.00 (13)
N2—C8—C9—C10163.23 (9)C19—C20—C21—O7159.64 (10)
N3—C9—C10—C111.43 (15)N5—C20—C21—O8160.96 (8)
C8—C9—C10—C11−176.37 (10)C19—C20—C21—O8−20.40 (13)
C9—C10—C11—C12−0.44 (17)C1—O2—C22—C23170.48 (10)
C10—C11—C12—C13−1.12 (17)C21—O8—C24—C25168.94 (8)
D—H···AD—HH···AD···AD—H···A
N4—H4···N30.885 (14)2.153 (14)2.6131 (13)111.7 (11)
N4—H4···N50.885 (14)2.158 (14)2.6297 (12)112.8 (11)
N2—H2···N30.878 (15)2.148 (14)2.6006 (12)111.4 (11)
N2—H2···N10.878 (15)2.151 (14)2.6329 (12)114.0 (11)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N4—H4⋯N30.885 (14)2.153 (14)2.6131 (13)111.7 (11)
N4—H4⋯N50.885 (14)2.158 (14)2.6297 (12)112.8 (11)
N2—H2⋯N30.878 (15)2.148 (14)2.6006 (12)111.4 (11)
N2—H2⋯N10.878 (15)2.151 (14)2.6329 (12)114.0 (11)
  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Pyridine-imide oligomers.

Authors:  Xiao Li; Chuanlang Zhan; Yaobing Wang; Jiannian Yao
Journal:  Chem Commun (Camb)       Date:  2008-04-21       Impact factor: 6.222

  2 in total

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