Literature DB >> 21581691

2-Amino-4-(2-chloro-phen-yl)-5,10-dioxo-5,10-dihydro-4H-benzo[g]chromene-3-carbonitrile.

Jinpeng Zhang, Xiaohong Zhang, Shu Yan, Ning Ma, Shujiang Tu.   

Abstract

In the mol-ecule of the title compound, C(20)H(11)ClN(2)O(3), the pyran ring adopts a flattened-boat conformation. In the crystal structure, inter-molecular N-H⋯N and N-H⋯O hydrogen bonds generate edge-fused R(2) (2)(12) and R(2) (2)(14) ring motifs; the hydrogen-bonded motifs are linked to each other, forming a three-dimensional network. A π-π contact [centroid-to-centroid distance = 3.879 (3) Å] between the chloro-phenyl rings may further stabilize the structure.

Entities:  

Year:  2008        PMID: 21581691      PMCID: PMC2967857          DOI: 10.1107/S1600536808039986

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the biological activity of pyran and naphthoquinone compounds, see: El-Agrody et al. (2000 ▶); Mohr et al. (1975 ▶); Banzatti et al. (1984 ▶); Hatakeyama et al. (1988 ▶); Tandon et al. (1991 ▶); Kongkathip et al. (2003 ▶). For bond-length data, see: Allen et al. (1987 ▶). For puckering parameters, see: Cremer & Pople (1975 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C20H11ClN2O3 M = 362.76 Triclinic, a = 8.3201 (10) Å b = 9.3729 (12) Å c = 11.0081 (16) Å α = 93.015 (1)° β = 96.393 (1)° γ = 110.732 (2)° V = 793.95 (18) Å3 Z = 2 Mo Kα radiation μ = 0.27 mm−1 T = 298 (2) K 0.17 × 0.15 × 0.10 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.956, T max = 0.974 4207 measured reflections 2746 independent reflections 1566 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.053 wR(F 2) = 0.100 S = 1.04 2746 reflections 235 parameters H-atom parameters constrained Δρmax = 0.40 e Å−3 Δρmin = −0.26 e Å−3 Data collection: SMART (Bruker, 1997 ▶); cell refinement: SAINT (Bruker, 1997 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶) and PLATON (Spek, 2003 ▶); software used to prepare material for publication: SHELXTL and PLATON. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808039986/hk2585sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808039986/hk2585Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H11ClN2O3Z = 2
Mr = 362.76F(000) = 372
Triclinic, P1Dx = 1.517 Mg m3
Hall symbol: -P 1Melting point > 573 K
a = 8.3201 (10) ÅMo Kα radiation, λ = 0.71073 Å
b = 9.3729 (12) ÅCell parameters from 959 reflections
c = 11.0081 (16) Åθ = 2.8–25.1°
α = 93.015 (1)°µ = 0.27 mm1
β = 96.393 (1)°T = 298 K
γ = 110.732 (2)°Block, orange
V = 793.95 (18) Å30.17 × 0.15 × 0.10 mm
Bruker SMART CCD area-detector diffractometer2746 independent reflections
Radiation source: fine-focus sealed tube1566 reflections with I > 2σ(I)
graphiteRint = 0.025
φ and ω scansθmax = 25.0°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −9→9
Tmin = 0.956, Tmax = 0.974k = −11→10
4207 measured reflectionsl = −13→8
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.053Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.100H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0295P)2] where P = (Fo2 + 2Fc2)/3
2746 reflections(Δ/σ)max < 0.001
235 parametersΔρmax = 0.40 e Å3
0 restraintsΔρmin = −0.26 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl1−0.01619 (12)0.04001 (10)0.69113 (9)0.0587 (3)
O10.1440 (3)0.3890 (2)0.6133 (2)0.0405 (6)
O20.5886 (3)0.2063 (3)0.7464 (2)0.0541 (7)
O30.2251 (3)0.3753 (3)0.3898 (2)0.0536 (7)
N1−0.0034 (3)0.4822 (3)0.7313 (2)0.0471 (8)
H1A−0.03040.50990.79940.057*
H1B−0.05560.49360.66260.057*
N20.1921 (4)0.4871 (4)1.0491 (3)0.0578 (9)
C10.1196 (4)0.4216 (3)0.7320 (3)0.0369 (8)
C20.2135 (4)0.3957 (3)0.8299 (3)0.0344 (8)
C30.3297 (4)0.3028 (3)0.8197 (3)0.0336 (8)
H30.44120.36220.86960.040*
C40.3646 (4)0.2940 (3)0.6883 (3)0.0309 (8)
C50.5061 (4)0.2424 (3)0.6626 (3)0.0360 (8)
C60.5448 (4)0.2361 (3)0.5342 (3)0.0339 (8)
C70.6774 (4)0.1889 (4)0.5076 (3)0.0466 (9)
H70.74160.16040.56990.056*
C80.7152 (5)0.1837 (4)0.3890 (3)0.0538 (10)
H80.80640.15400.37180.065*
C90.6180 (4)0.2225 (4)0.2961 (3)0.0530 (10)
H90.64260.21700.21600.064*
C100.4851 (4)0.2690 (4)0.3207 (3)0.0461 (9)
H100.42020.29510.25740.055*
C110.4476 (4)0.2770 (3)0.4401 (3)0.0346 (8)
C120.3083 (4)0.3326 (3)0.4679 (3)0.0350 (8)
C130.2762 (4)0.3374 (3)0.5983 (3)0.0337 (8)
C140.1989 (4)0.4470 (4)0.9505 (3)0.0405 (9)
C150.2617 (4)0.1487 (3)0.8721 (3)0.0322 (8)
C160.1126 (4)0.0269 (4)0.8235 (3)0.0374 (9)
C170.0573 (4)−0.1101 (4)0.8767 (3)0.0450 (9)
H17−0.0427−0.19030.84120.054*
C180.1515 (5)−0.1260 (4)0.9819 (3)0.0538 (10)
H180.1157−0.21771.01790.065*
C190.2985 (5)−0.0068 (4)1.0343 (3)0.0514 (10)
H190.3613−0.01721.10650.062*
C200.3530 (4)0.1287 (4)0.9798 (3)0.0433 (9)
H200.45320.20841.01580.052*
U11U22U33U12U13U23
Cl10.0512 (6)0.0542 (6)0.0649 (7)0.0171 (4)−0.0099 (5)0.0082 (5)
O10.0409 (14)0.0529 (14)0.0391 (14)0.0302 (12)0.0069 (11)0.0067 (12)
O20.0534 (16)0.0759 (17)0.0500 (16)0.0423 (14)0.0080 (13)0.0191 (14)
O30.0643 (17)0.0733 (17)0.0398 (15)0.0459 (14)0.0020 (13)0.0114 (13)
N10.0525 (19)0.0636 (19)0.0407 (18)0.0403 (16)0.0056 (15)0.0031 (16)
N20.065 (2)0.066 (2)0.046 (2)0.0297 (18)0.0090 (18)−0.0059 (18)
C10.037 (2)0.0340 (19)0.044 (2)0.0177 (16)0.0102 (18)0.0047 (17)
C20.037 (2)0.0356 (19)0.035 (2)0.0183 (16)0.0072 (17)0.0027 (17)
C30.0340 (19)0.0366 (19)0.033 (2)0.0165 (15)0.0015 (16)0.0036 (17)
C40.0328 (19)0.0285 (17)0.034 (2)0.0135 (15)0.0057 (16)0.0044 (16)
C50.0319 (19)0.0350 (19)0.044 (2)0.0162 (16)0.0015 (18)0.0081 (18)
C60.033 (2)0.0334 (18)0.036 (2)0.0121 (15)0.0061 (17)0.0041 (17)
C70.043 (2)0.053 (2)0.054 (3)0.0278 (18)0.0078 (19)0.008 (2)
C80.049 (2)0.065 (3)0.055 (3)0.028 (2)0.016 (2)−0.002 (2)
C90.051 (2)0.065 (3)0.044 (2)0.021 (2)0.010 (2)−0.001 (2)
C100.043 (2)0.054 (2)0.044 (2)0.0207 (18)0.0074 (19)0.003 (2)
C110.035 (2)0.0324 (19)0.035 (2)0.0108 (15)0.0047 (17)−0.0009 (17)
C120.035 (2)0.0325 (19)0.039 (2)0.0132 (15)0.0047 (17)0.0037 (17)
C130.0346 (19)0.0297 (18)0.040 (2)0.0158 (15)0.0061 (17)0.0012 (17)
C140.039 (2)0.037 (2)0.048 (2)0.0164 (16)0.0055 (19)0.008 (2)
C150.0331 (19)0.0377 (19)0.0338 (19)0.0207 (16)0.0098 (16)0.0064 (17)
C160.036 (2)0.042 (2)0.042 (2)0.0234 (16)0.0058 (17)0.0035 (18)
C170.041 (2)0.036 (2)0.062 (3)0.0163 (16)0.0148 (19)0.0048 (19)
C180.062 (3)0.050 (2)0.063 (3)0.031 (2)0.021 (2)0.023 (2)
C190.059 (3)0.059 (3)0.046 (2)0.032 (2)0.009 (2)0.015 (2)
C200.045 (2)0.047 (2)0.040 (2)0.0190 (17)0.0035 (18)0.0086 (18)
Cl1—C161.747 (3)C7—C81.379 (5)
O1—C11.380 (4)C7—H70.9300
O1—C131.370 (3)C8—C91.377 (4)
O2—C51.223 (3)C8—H80.9300
O3—C121.216 (3)C9—C101.372 (4)
N1—C11.334 (3)C9—H90.9300
N1—H1A0.8600C10—C111.389 (4)
N1—H1B0.8600C10—H100.9300
N2—C141.144 (4)C11—C121.482 (4)
C1—C21.343 (4)C12—C131.490 (4)
C2—C141.420 (5)C15—C161.383 (4)
C2—C31.522 (4)C15—C201.393 (4)
C3—C41.510 (4)C16—C171.387 (4)
C3—C151.524 (4)C17—C181.370 (4)
C3—H30.9800C17—H170.9300
C4—C131.335 (4)C18—C191.373 (4)
C4—C51.470 (4)C18—H180.9300
C5—C61.487 (4)C19—C201.383 (4)
C6—C71.380 (4)C19—H190.9300
C6—C111.396 (4)C20—H200.9300
C13—O1—C1117.4 (2)C8—C9—H9119.7
C1—N1—H1A120.0C9—C10—C11120.0 (3)
C1—N1—H1B120.0C9—C10—H10120.0
H1A—N1—H1B120.0C11—C10—H10120.0
N1—C1—C2127.8 (3)C10—C11—C6119.6 (3)
N1—C1—O1110.1 (3)C10—C11—C12120.2 (3)
C2—C1—O1122.1 (3)C6—C11—C12120.2 (3)
C1—C2—C14120.4 (3)O3—C12—C11122.6 (3)
C1—C2—C3122.9 (3)O3—C12—C13120.7 (3)
C14—C2—C3116.6 (3)C11—C12—C13116.8 (3)
C4—C3—C2108.4 (2)C4—C13—O1124.6 (3)
C4—C3—C15114.8 (2)C4—C13—C12123.5 (3)
C2—C3—C15113.2 (3)O1—C13—C12111.9 (3)
C4—C3—H3106.6N2—C14—C2177.6 (4)
C2—C3—H3106.6C16—C15—C20116.6 (3)
C15—C3—H3106.6C16—C15—C3125.4 (3)
C13—C4—C5120.3 (3)C20—C15—C3118.0 (3)
C13—C4—C3121.8 (3)C15—C16—C17122.3 (3)
C5—C4—C3117.8 (3)C15—C16—Cl1120.9 (2)
O2—C5—C4119.6 (3)C17—C16—Cl1116.8 (3)
O2—C5—C6121.8 (3)C18—C17—C16119.4 (3)
C4—C5—C6118.6 (3)C18—C17—H17120.3
C7—C6—C11119.7 (3)C16—C17—H17120.3
C7—C6—C5119.8 (3)C17—C18—C19120.1 (3)
C11—C6—C5120.6 (3)C17—C18—H18120.0
C8—C7—C6120.2 (3)C19—C18—H18120.0
C8—C7—H7119.9C18—C19—C20119.9 (3)
C6—C7—H7119.9C18—C19—H19120.0
C9—C8—C7120.0 (4)C20—C19—H19120.0
C9—C8—H8120.0C19—C20—C15121.6 (3)
C7—C8—H8120.0C19—C20—H20119.2
C10—C9—C8120.5 (4)C15—C20—H20119.2
C10—C9—H9119.7
C13—O1—C1—N1174.8 (2)C7—C6—C11—C12−178.1 (3)
C13—O1—C1—C2−3.9 (4)C5—C6—C11—C122.1 (4)
N1—C1—C2—C14−5.9 (6)C10—C11—C12—O3−1.4 (5)
O1—C1—C2—C14172.6 (3)C6—C11—C12—O3177.0 (3)
N1—C1—C2—C3169.9 (3)C10—C11—C12—C13179.9 (3)
O1—C1—C2—C3−11.5 (5)C6—C11—C12—C13−1.7 (4)
C1—C2—C3—C418.2 (4)C5—C4—C13—O1−179.1 (3)
C14—C2—C3—C4−165.8 (3)C3—C4—C13—O1−2.0 (5)
C1—C2—C3—C15−110.3 (4)C5—C4—C13—C122.0 (5)
C14—C2—C3—C1565.6 (4)C3—C4—C13—C12179.1 (3)
C2—C3—C4—C13−11.5 (4)C1—O1—C13—C411.0 (4)
C15—C3—C4—C13116.1 (3)C1—O1—C13—C12−170.1 (3)
C2—C3—C4—C5165.6 (3)O3—C12—C13—C4−179.1 (3)
C15—C3—C4—C5−66.7 (3)C11—C12—C13—C4−0.4 (4)
C13—C4—C5—O2178.4 (3)O3—C12—C13—O11.9 (4)
C3—C4—C5—O21.1 (4)C11—C12—C13—O1−179.4 (2)
C13—C4—C5—C6−1.6 (4)C4—C3—C15—C16−57.8 (4)
C3—C4—C5—C6−178.8 (3)C2—C3—C15—C1667.4 (4)
O2—C5—C6—C7−0.2 (5)C4—C3—C15—C20124.2 (3)
C4—C5—C6—C7179.7 (3)C2—C3—C15—C20−110.6 (3)
O2—C5—C6—C11179.5 (3)C20—C15—C16—C17−1.4 (5)
C4—C5—C6—C11−0.6 (4)C3—C15—C16—C17−179.4 (3)
C11—C6—C7—C80.7 (5)C20—C15—C16—Cl1178.3 (2)
C5—C6—C7—C8−179.5 (3)C3—C15—C16—Cl10.2 (4)
C6—C7—C8—C9−1.4 (5)C15—C16—C17—C180.8 (5)
C7—C8—C9—C101.1 (5)Cl1—C16—C17—C18−178.8 (3)
C8—C9—C10—C11−0.1 (5)C16—C17—C18—C190.4 (5)
C9—C10—C11—C6−0.6 (5)C17—C18—C19—C20−1.0 (5)
C9—C10—C11—C12177.8 (3)C18—C19—C20—C150.4 (5)
C7—C6—C11—C100.3 (5)C16—C15—C20—C190.8 (5)
C5—C6—C11—C10−179.5 (3)C3—C15—C20—C19179.0 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1A···N2i0.862.263.080 (4)159
N1—H1B···O3ii0.862.222.889 (3)134
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯N2i0.862.263.080 (4)159
N1—H1B⋯O3ii0.862.222.889 (3)134

Symmetry codes: (i) ; (ii) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Pyran copolymer as an effective adjuvant to chemotherapy against a murine leukemia and solid tumor.

Authors:  S J Mohr; M A Chirigos; F S Fuhrman; J W Pryor
Journal:  Cancer Res       Date:  1975-12       Impact factor: 12.701

3.  Hypolipidemic activity of some derivatives of 6H-dibenzo[b,d]pyran.

Authors:  C Banzatti; U Branzoli; P P Lovisolo; P Melloni; G Orsini; P Salvadori
Journal:  Arzneimittelforschung       Date:  1984

4.  Potent antitumor activity of synthetic 1,2-Naphthoquinones and 1,4-Naphthoquinones.

Authors:  Ngampong Kongkathip; Boonsong Kongkathip; Pongpun Siripong; Chak Sangma; Suwaporn Luangkamin; Momad Niyomdecha; Suppachai Pattanapa; Suratsawadee Piyaviriyagul; Palangpon Kongsaeree
Journal:  Bioorg Med Chem       Date:  2003-07-17       Impact factor: 3.641

  4 in total

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