Literature DB >> 21581681

Ethyl 6-amino-5-cyano-4-isopropyl-2-methyl-4H-pyran-3-carboxyl-ate.

Mehdi Messaâd, Besma Hamdi, Fakher Chabchoub, Abdelhamid Ben Salah, Mansour Salem.   

Abstract

In the title compound, C(13)H(18)N(2)O(3), the two H atoms of the NH(2) group are engaged in hydrogen bonding with the N atom of the cyano group and with one O atom of the ethoxy-carbonyl group, building a chain parallel to the [100] direction. The N-H⋯N hydrogen bonds assemble the mol-ecules around inversion centres, forming dimers with an R(2) (2)(12) graph-set motif.

Entities:  

Year:  2008        PMID: 21581681      PMCID: PMC2967956          DOI: 10.1107/S160053680804052X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background, see: Messaâd et al. (2005 ▶, 2006 ▶); Mohr et al. (1975 ▶); Ohira & Yatagai (1993 ▶); Tandon et al. (1991 ▶); Wang et al. (1996 ▶); Zamocka et al. (1992 ▶); Bloxham et al. (1994 ▶); Elagamey et al. (1993 ▶); Khafagy et al. (2002 ▶). For graph-set notation, see: Etter (1990 ▶); Bernstein et al. (1994 ▶).

Experimental

Crystal data

C13H18N2O3 M = 250.29 Triclinic, a = 8.0856 (1) Å b = 9.3193 (2) Å c = 10.4563 (2) Å α = 65.652 (1)° β = 69.679 (1)° γ = 76.105 (1)° V = 668.80 (2) Å3 Z = 2 Mo Kα radiation μ = 0.09 mm−1 T = 296 K 0.44 × 0.36 × 0.18 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 1998 ▶) T min = 0.959, T max = 0.982 17876 measured reflections 4664 independent reflections 3324 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.046 wR(F 2) = 0.143 S = 1.05 4664 reflections 167 parameters H-atom parameters constrained Δρmax = 0.24 e Å−3 Δρmin = −0.24 e Å−3 Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT (Bruker, 1998 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPIII (Burnett & Johnson, 1996 ▶), ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2003 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053680804052X/dn2412sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680804052X/dn2412Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H18N2O3Z = 2
Mr = 250.29F(000) = 268
Triclinic, P1Dx = 1.243 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.0856 (1) ÅCell parameters from 2132 reflections
b = 9.3193 (2) Åθ = 2.3–21.2°
c = 10.4563 (2) ŵ = 0.09 mm1
α = 65.652 (1)°T = 296 K
β = 69.679 (1)°Prism, colourless
γ = 76.105 (1)°0.44 × 0.36 × 0.18 mm
V = 668.80 (2) Å3
Bruker SMART CCD area-detector diffractometer4664 independent reflections
Radiation source: sealed tube3324 reflections with I > 2σ(I)
graphiteRint = 0.027
φ and ω scansθmax = 32.1°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 1998)h = −12→12
Tmin = 0.959, Tmax = 0.982k = −13→12
17876 measured reflectionsl = −15→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.046Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.143H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0801P)2 + 0.026P] where P = (Fo2 + 2Fc2)/3
4664 reflections(Δ/σ)max = 0.009
167 parametersΔρmax = 0.24 e Å3
0 restraintsΔρmin = −0.24 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.36662 (8)0.54982 (7)0.29951 (8)0.03977 (18)
O2−0.23592 (10)0.56365 (10)0.34370 (11)0.0559 (2)
O3−0.12340 (9)0.79434 (9)0.22760 (9)0.0463 (2)
N20.54618 (11)0.33268 (10)0.37642 (11)0.0440 (2)
H2A0.61610.39720.36310.053*
H2B0.57730.23210.40800.053*
N30.29885 (15)0.00436 (11)0.48430 (13)0.0583 (3)
C10.38924 (12)0.38872 (11)0.34801 (10)0.0340 (2)
C20.26177 (12)0.30627 (10)0.36205 (10)0.0341 (2)
C30.10119 (11)0.39019 (10)0.30733 (10)0.03172 (19)
H3−0.00200.33800.38010.038*
C40.07103 (11)0.55961 (10)0.29910 (10)0.03243 (19)
C50.19954 (12)0.63057 (10)0.29517 (10)0.0344 (2)
C6−0.11029 (12)0.63756 (12)0.29492 (11)0.0364 (2)
C7−0.29880 (14)0.87305 (14)0.21657 (15)0.0535 (3)
H7A−0.38190.85240.31330.064*
H7B−0.34090.83420.16180.064*
C8−0.2844 (2)1.04593 (17)0.14025 (19)0.0738 (4)
H8A−0.24951.08430.19820.111*
H8B−0.39731.10070.12640.111*
H8C−0.19721.06440.04690.111*
C90.28332 (13)0.13998 (11)0.42860 (12)0.0393 (2)
C100.19803 (15)0.79274 (12)0.28995 (14)0.0471 (3)
H10A0.07850.84390.30480.071*
H10B0.27000.85310.19630.071*
H10C0.24460.78590.36540.071*
C110.11157 (12)0.38374 (12)0.15880 (11)0.0382 (2)
H110.00710.44990.12970.046*
C120.27420 (17)0.45164 (17)0.03829 (13)0.0573 (3)
H12A0.37950.39030.06390.086*
H12B0.27280.55960.02660.086*
H12C0.27300.4479−0.05180.086*
C130.1026 (2)0.21704 (15)0.17254 (16)0.0614 (3)
H13A0.08520.22040.08500.092*
H13B0.00540.17280.25480.092*
H13C0.21160.15250.18650.092*
U11U22U33U12U13U23
O10.0361 (3)0.0241 (3)0.0613 (4)−0.0051 (2)−0.0227 (3)−0.0092 (3)
O20.0355 (4)0.0475 (5)0.0925 (6)−0.0084 (3)−0.0162 (4)−0.0320 (4)
O30.0353 (3)0.0343 (4)0.0665 (5)0.0028 (3)−0.0207 (3)−0.0140 (3)
N20.0393 (4)0.0292 (4)0.0672 (6)−0.0028 (3)−0.0279 (4)−0.0109 (4)
N30.0649 (6)0.0298 (5)0.0844 (8)−0.0039 (4)−0.0399 (6)−0.0098 (5)
C10.0358 (4)0.0255 (4)0.0421 (5)−0.0041 (3)−0.0164 (4)−0.0088 (3)
C20.0378 (4)0.0246 (4)0.0437 (5)−0.0043 (3)−0.0185 (4)−0.0100 (3)
C30.0322 (4)0.0248 (4)0.0417 (4)−0.0057 (3)−0.0146 (3)−0.0106 (3)
C40.0320 (4)0.0264 (4)0.0424 (5)−0.0030 (3)−0.0143 (3)−0.0128 (3)
C50.0357 (4)0.0258 (4)0.0450 (5)−0.0038 (3)−0.0171 (4)−0.0111 (3)
C60.0334 (4)0.0343 (5)0.0481 (5)−0.0018 (3)−0.0138 (4)−0.0204 (4)
C70.0398 (5)0.0505 (7)0.0749 (8)0.0106 (5)−0.0261 (5)−0.0276 (6)
C80.0675 (8)0.0544 (8)0.0838 (10)0.0189 (6)−0.0321 (7)−0.0150 (7)
C90.0413 (5)0.0289 (5)0.0525 (5)−0.0034 (4)−0.0224 (4)−0.0120 (4)
C100.0509 (5)0.0294 (5)0.0710 (7)−0.0048 (4)−0.0277 (5)−0.0188 (5)
C110.0393 (5)0.0369 (5)0.0472 (5)−0.0021 (4)−0.0200 (4)−0.0183 (4)
C120.0578 (7)0.0678 (8)0.0461 (6)−0.0139 (6)−0.0110 (5)−0.0195 (6)
C130.0818 (9)0.0518 (7)0.0718 (8)−0.0148 (6)−0.0272 (7)−0.0343 (6)
O1—C11.3599 (11)C7—C81.4871 (18)
O1—C51.3855 (11)C7—H7A0.9700
O2—C61.2053 (11)C7—H7B0.9700
O3—C61.3308 (12)C8—H8A0.9600
O3—C71.4516 (12)C8—H8B0.9600
N2—C11.3367 (11)C8—H8C0.9600
N2—H2A0.8600C10—H10A0.9600
N2—H2B0.8600C10—H10B0.9600
N3—C91.1489 (13)C10—H10C0.9600
C1—C21.3625 (12)C11—C131.5172 (15)
C2—C91.4077 (13)C11—C121.5194 (15)
C2—C31.5113 (12)C11—H110.9800
C3—C41.5091 (12)C12—H12A0.9600
C3—C111.5513 (13)C12—H12B0.9600
C3—H30.9800C12—H12C0.9600
C4—C51.3404 (11)C13—H13A0.9600
C4—C61.4785 (12)C13—H13B0.9600
C5—C101.4868 (13)C13—H13C0.9600
C1—O1—C5119.76 (7)C7—C8—H8A109.5
C6—O3—C7116.29 (8)C7—C8—H8B109.5
C1—N2—H2A120.0H8A—C8—H8B109.5
C1—N2—H2B120.0C7—C8—H8C109.5
H2A—N2—H2B120.0H8A—C8—H8C109.5
N2—C1—O1110.47 (7)H8B—C8—H8C109.5
N2—C1—C2128.56 (8)N3—C9—C2179.11 (13)
O1—C1—C2120.97 (8)C5—C10—H10A109.5
C1—C2—C9118.33 (8)C5—C10—H10B109.5
C1—C2—C3121.20 (8)H10A—C10—H10B109.5
C9—C2—C3120.47 (7)C5—C10—H10C109.5
C4—C3—C2109.19 (7)H10A—C10—H10C109.5
C4—C3—C11110.66 (7)H10B—C10—H10C109.5
C2—C3—C11114.29 (8)C13—C11—C12110.81 (10)
C4—C3—H3107.5C13—C11—C3111.65 (9)
C2—C3—H3107.5C12—C11—C3112.53 (8)
C11—C3—H3107.5C13—C11—H11107.2
C5—C4—C6124.13 (8)C12—C11—H11107.2
C5—C4—C3121.99 (8)C3—C11—H11107.2
C6—C4—C3113.88 (7)C11—C12—H12A109.5
C4—C5—O1120.88 (8)C11—C12—H12B109.5
C4—C5—C10130.87 (9)H12A—C12—H12B109.5
O1—C5—C10108.23 (7)C11—C12—H12C109.5
O2—C6—O3122.42 (8)H12A—C12—H12C109.5
O2—C6—C4122.32 (9)H12B—C12—H12C109.5
O3—C6—C4115.19 (7)C11—C13—H13A109.5
O3—C7—C8107.55 (10)C11—C13—H13B109.5
O3—C7—H7A110.2H13A—C13—H13B109.5
C8—C7—H7A110.2C11—C13—H13C109.5
O3—C7—H7B110.2H13A—C13—H13C109.5
C8—C7—H7B110.2H13B—C13—H13C109.5
H7A—C7—H7B108.5
C5—O1—C1—N2−165.46 (8)C6—C4—C5—C101.72 (18)
C5—O1—C1—C214.55 (14)C3—C4—C5—C10−178.70 (10)
N2—C1—C2—C97.28 (17)C1—O1—C5—C4−18.29 (14)
O1—C1—C2—C9−172.73 (9)C1—O1—C5—C10160.34 (9)
N2—C1—C2—C3−172.47 (10)C7—O3—C6—O20.41 (16)
O1—C1—C2—C37.52 (15)C7—O3—C6—C4177.50 (9)
C1—C2—C3—C4−23.01 (13)C5—C4—C6—O2−155.83 (11)
C9—C2—C3—C4157.24 (9)C3—C4—C6—O224.56 (14)
C1—C2—C3—C11101.52 (11)C5—C4—C6—O327.08 (14)
C9—C2—C3—C11−78.22 (11)C3—C4—C6—O3−152.53 (9)
C2—C3—C4—C519.51 (13)C6—O3—C7—C8179.26 (11)
C11—C3—C4—C5−107.12 (10)C4—C3—C11—C13−167.94 (8)
C2—C3—C4—C6−160.87 (8)C2—C3—C11—C1368.32 (10)
C11—C3—C4—C672.50 (9)C4—C3—C11—C1266.72 (11)
C3—C4—C5—O1−0.42 (14)C2—C3—C11—C12−57.03 (11)
D—H···AD—HH···AD···AD—H···A
N2—H2A···O2i0.862.082.9411 (11)174
N2—H2B···N3ii0.862.193.0269 (13)164
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2A⋯O2i0.862.082.9411 (11)174
N2—H2B⋯N3ii0.862.193.0269 (13)164

Symmetry codes: (i) ; (ii) .

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