Literature DB >> 21581669

1,4-Bis(imidazol-1-yl)benzene-terephthalic acid (1/1).

Shiyong Zhang, Yurong Tang, Zhihua Mao, Mingliang Li, Jingbo Lan, Xiaoyu Su.   

Abstract

In the title compound, C(12)H(10)N(4C(8)H(6)O(4), 1,4-bis-(imidazol-1-yl)benzene and terephthalic acid mol-ecules are joined via strong O-H⋯N hydrogen bonds to form infinite zigzag chains. Both mol-ecules are located on crystallographic inversion centers. The O-H⋯N hydrogen-bonded chains are assembled into two-dimensional layers through weak C-H⋯O and strong π-π stacking inter-actions [centroid-centroid distance = 3.818 (2) Å], leading to the formation of a three-dimensional supra-molecular structure.

Entities:  

Year:  2008        PMID: 21581669      PMCID: PMC2967945          DOI: 10.1107/S1600536808040324

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background, see: Aakeröy et al. (2006 ▶); Aakeröy & Seddon (1993 ▶); Desiraju, 2007 ▶; Corna et al. (2004 ▶); Dobrzanska et al. (2006); Van Roey et al. (1991 ▶). For similar structures, see: Wang et al. (2007 ▶); Su et al. (2007 ▶).

Experimental

Crystal data

C12H10N4·C8H6O4 M = 376.37 Monoclinic, a = 5.2780 (17) Å b = 10.599 (5) Å c = 15.449 (5) Å β = 91.17 (3)° V = 864.1 (6) Å3 Z = 2 Mo Kα radiation μ = 0.10 mm−1 T = 293 (2) K 0.25 × 0.22 × 0.15 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: none 1895 measured reflections 1538 independent reflections 904 reflections with I > 2σ(I) R int = 0.008 3 standard reflections every 200 reflections intensity decay: 2.5%

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.132 S = 0.95 1538 reflections 128 parameters H-atom parameters constrained Δρmax = 0.18 e Å−3 Δρmin = −0.21 e Å−3 Data collection: DIFRAC (Gabe & White, 1993 ▶); cell refinement: DIFRAC; data reduction: NRCVAX (Gabe et al., 1989 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPIII (Burnett & Johnson, 1996 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808040324/zl2155sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808040324/zl2155Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H10N4·C8H6O4F(000) = 392
Mr = 376.37Dx = 1.447 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 18 reflections
a = 5.2780 (17) Åθ = 4.5–7.6°
b = 10.599 (5) ŵ = 0.10 mm1
c = 15.449 (5) ÅT = 293 K
β = 91.17 (3)°Block, colourless
V = 864.1 (6) Å30.25 × 0.22 × 0.15 mm
Z = 2
Enraf–Nonius CAD-4 diffractometerRint = 0.008
Radiation source: fine-focus sealed tubeθmax = 25.5°, θmin = 2.3°
graphiteh = −6→6
ω/2θ scansk = 0→12
1895 measured reflectionsl = −9→18
1538 independent reflections3 standard reflections every 200 reflections
904 reflections with I > 2σ(I) intensity decay: 2.5%
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.132H-atom parameters constrained
S = 0.95w = 1/[σ2(Fo2) + (0.0842P)2] where P = (Fo2 + 2Fc2)/3
1538 reflections(Δ/σ)max < 0.001
128 parametersΔρmax = 0.18 e Å3
0 restraintsΔρmin = −0.21 e Å3
Experimental. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R– factors based on ALL data will be even larger.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.3750 (4)0.57026 (17)0.12218 (11)0.0403 (5)
N20.7031 (4)0.5588 (2)0.21140 (12)0.0489 (6)
C10.0819 (5)0.6228 (2)0.00451 (16)0.0467 (6)
H1A0.13820.70590.00730.056*
C2−0.1041 (5)0.5891 (2)−0.05539 (15)0.0467 (6)
H2−0.17450.6495−0.09230.056*
C30.1844 (4)0.5339 (2)0.06017 (13)0.0375 (5)
C40.5583 (4)0.4962 (2)0.15707 (14)0.0445 (6)
H40.57880.41120.14400.053*
C50.6087 (5)0.6786 (2)0.21254 (16)0.0531 (7)
H50.67400.74440.24600.064*
C60.4073 (3)0.68757 (13)0.15820 (8)0.0504 (7)
H60.30950.75900.14720.061*
O10.0950 (3)0.49725 (13)0.30802 (8)0.0499 (5)
H1−0.02880.51790.27840.075*
O20.0072 (4)0.67524 (16)0.37876 (12)0.0601 (6)
C70.1260 (5)0.5775 (2)0.37186 (15)0.0428 (6)
C80.3231 (4)0.5370 (2)0.43721 (14)0.0387 (6)
C90.5136 (4)0.4536 (2)0.41709 (14)0.0415 (6)
H90.52360.42210.36110.050*
C100.6897 (4)0.4164 (2)0.47922 (14)0.0435 (6)
H100.81710.36000.46500.052*
U11U22U33U12U13U23
N10.0420 (11)0.0393 (11)0.0391 (10)0.0033 (9)−0.0132 (9)0.0005 (8)
N20.0476 (12)0.0568 (13)0.0415 (11)−0.0001 (11)−0.0184 (9)−0.0007 (9)
C10.0516 (15)0.0374 (12)0.0504 (13)0.0036 (11)−0.0187 (12)0.0008 (10)
C20.0542 (15)0.0390 (13)0.0460 (12)0.0053 (12)−0.0196 (11)0.0056 (10)
C30.0369 (12)0.0418 (13)0.0334 (11)0.0059 (10)−0.0102 (9)−0.0028 (9)
C40.0446 (13)0.0476 (14)0.0405 (12)0.0064 (12)−0.0176 (10)−0.0021 (10)
C50.0619 (16)0.0460 (14)0.0506 (14)−0.0053 (13)−0.0198 (12)−0.0023 (12)
C60.0588 (16)0.0377 (14)0.0539 (15)0.0035 (12)−0.0198 (13)−0.0039 (11)
O10.0495 (10)0.0531 (10)0.0462 (9)0.0021 (8)−0.0205 (7)−0.0019 (8)
O20.0645 (12)0.0425 (10)0.0720 (13)0.0053 (9)−0.0335 (10)−0.0041 (9)
C70.0400 (13)0.0422 (14)0.0457 (13)−0.0084 (12)−0.0128 (11)0.0030 (11)
C80.0412 (13)0.0335 (12)0.0409 (12)−0.0106 (10)−0.0133 (10)0.0058 (9)
C90.0427 (13)0.0441 (13)0.0372 (11)−0.0040 (11)−0.0087 (10)−0.0003 (10)
C100.0363 (13)0.0440 (14)0.0498 (13)−0.0044 (11)−0.0083 (11)0.0019 (11)
N1—C41.349 (3)C5—H50.9300
N1—C61.371 (2)C6—H60.9300
N1—C31.428 (3)O1—C71.31010
N2—C41.305 (3)O1—H10.8200
N2—C51.364 (3)O2—C71.217 (3)
C1—C31.379 (3)C7—C81.498 (3)
C1—C21.383 (3)C8—C91.379 (3)
C1—H1A0.9300C8—C10ii1.385 (3)
C2—C3i1.372 (3)C9—C101.380 (3)
C2—H20.9300C9—H90.9300
C3—C2i1.372 (3)C10—C8ii1.385 (3)
C4—H40.9300C10—H100.9300
C5—C61.344 (3)
C4—N1—C6106.45 (17)N2—C5—H5125.0
C4—N1—C3126.9 (2)C5—C6—N1106.22 (16)
C6—N1—C3126.66 (17)C5—C6—H6126.9
C4—N2—C5105.8 (2)N1—C6—H6126.9
C3—C1—C2120.3 (2)C7—O1—H1109.5
C3—C1—H1A119.8O2—C7—O1124.20
C2—C1—H1A119.8O2—C7—C8122.5 (2)
C3i—C2—C1119.7 (2)O1—C7—C8113.31
C3i—C2—H2120.1C9—C8—C10ii119.2 (2)
C1—C2—H2120.1C9—C8—C7122.1 (2)
C2i—C3—C1119.9 (2)C10ii—C8—C7118.7 (2)
C2i—C3—N1120.35 (19)C8—C9—C10120.7 (2)
C1—C3—N1119.7 (2)C8—C9—H9119.7
N2—C4—N1111.5 (2)C10—C9—H9119.7
N2—C4—H4124.2C9—C10—C8ii120.1 (2)
N1—C4—H4124.2C9—C10—H10119.9
C6—C5—N2110.01 (19)C8ii—C10—H10119.9
C6—C5—H5125.0
C3—C1—C2—C3i−0.9 (4)N2—C5—C6—N10.0 (3)
C2—C1—C3—C2i0.9 (4)C4—N1—C6—C50.3 (2)
C2—C1—C3—N1−179.5 (2)C3—N1—C6—C5−179.9 (2)
C4—N1—C3—C2i26.8 (4)O2—C7—C8—C9−157.3 (2)
C6—N1—C3—C2i−153.0 (2)O1—C7—C8—C923.07
C4—N1—C3—C1−152.9 (2)O2—C7—C8—C10ii23.6 (4)
C6—N1—C3—C127.3 (3)O1—C7—C8—C10ii−155.90
C5—N2—C4—N10.5 (3)C10ii—C8—C9—C100.2 (4)
C6—N1—C4—N2−0.5 (3)C7—C8—C9—C10−178.8 (2)
C3—N1—C4—N2179.6 (2)C8—C9—C10—C8ii−0.2 (4)
C4—N2—C5—C6−0.3 (3)
D—H···AD—HH···AD···AD—H···A
O1—H1···N2iii0.821.792.60885178
C2—H2···O2iv0.932.543.376 (3)150
C4—H4···O2v0.932.563.463 (3)162
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯N2i0.821.792.60885178
C2—H2⋯O2ii0.932.543.376 (3)150
C4—H4⋯O2iii0.932.563.463 (3)162

Symmetry codes: (i) ; (ii) ; (iii) .

  4 in total

1.  Crystal engineering: a holistic view.

Authors:  Gautam R Desiraju
Journal:  Angew Chem Int Ed Engl       Date:  2007       Impact factor: 15.336

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Structure of cis-1-([4-(1-imidazolylmethyl)cyclohexyl]methyl)imidazole- succinic acid complex.

Authors:  P Van Roey; K A Bullion; Y Osawa; R M Bowman; D G Braun
Journal:  Acta Crystallogr C       Date:  1991-05-15       Impact factor: 1.172

4.  Supramolecular self-assembled molecules as organic directing agent for synthesis of zeolites.

Authors:  Avelino Corma; Fernando Rey; Jordi Rius; Maria J Sabater; Susana Valencia
Journal:  Nature       Date:  2004-09-16       Impact factor: 49.962

  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.