Literature DB >> 21581586

3-Pyridin-2-yl-1H-1,2,4-triazol-5-amine.

Anton V Dolzhenko, Geok Kheng Tan, Lip Lin Koh, Anna V Dolzhenko, Wai Keung Chui.   

Abstract

In the title compound, C(7)H(7)N(5), the non-H atoms are almost coplanar (r.m.s. deviation = 0.050 Å), with the N atom of pyridine ring oriented to the N-N(H) side of the 1,2,4-triazole ring. The mean planes of the pyridine and 1,2,4-triazole rings form a dihedral angle of 5.58 (7)°. The N atom of the amino group adopts a pyramidal configuration. The mol-ecules are linked into a two-dimensional network parallel to (10) by N-H⋯N hydrogen bonds.

Entities:  

Year:  2008        PMID: 21581586      PMCID: PMC2968045          DOI: 10.1107/S1600536808042177

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For 1,2,4-triazol-5-amines as building blocks in the synthesis of fused heterocyclic systems, see: Dolzhenko et al. (2006 ▶, 2007a ▶,b ▶); Fischer, (2007 ▶). For a summary of structural data for 1,2,4-triazoles, see: Buzykin et al. (2006 ▶). For crystal structures of CuII complexes with 3-pyridin-2-yl-1,2,4-triazol-5-amine, see: Ferrer et al. (2004 ▶).

Experimental

Crystal data

C7H7N5 M = 161.18 Monoclinic, a = 7.3863 (6) Å b = 7.9096 (6) Å c = 13.2157 (11) Å β = 91.832 (2)° V = 771.70 (11) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 223 (2) K 0.36 × 0.16 × 0.12 mm

Data collection

Bruker SMART APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2001 ▶) T min = 0.967, T max = 0.989 5336 measured reflections 1772 independent reflections 1519 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.110 S = 1.05 1772 reflections 121 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.21 e Å−3 Δρmin = −0.20 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808042177/ci2719sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808042177/ci2719Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C7H7N5F(000) = 336
Mr = 161.18Dx = 1.387 Mg m3
Monoclinic, P21/nMelting point: 493 K
Hall symbol: -P 2ynMo Kα radiation, λ = 0.71073 Å
a = 7.3863 (6) ÅCell parameters from 1841 reflections
b = 7.9096 (6) Åθ = 3.0–26.6°
c = 13.2157 (11) ŵ = 0.10 mm1
β = 91.832 (2)°T = 223 K
V = 771.70 (11) Å3Block, colourless
Z = 40.36 × 0.16 × 0.12 mm
Bruker SMART APEX CCD diffractometer1772 independent reflections
Radiation source: fine-focus sealed tube1519 reflections with I > 2σ(I)
graphiteRint = 0.026
φ and ω scansθmax = 27.5°, θmin = 3.0°
Absorption correction: multi-scan (SADABS; Sheldrick, 2001)h = −9→9
Tmin = 0.967, Tmax = 0.989k = −8→10
5336 measured reflectionsl = −14→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.110H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0539P)2 + 0.1487P] where P = (Fo2 + 2Fc2)/3
1772 reflections(Δ/σ)max = 0.001
121 parametersΔρmax = 0.21 e Å3
0 restraintsΔρmin = −0.20 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.72741 (16)0.34999 (14)0.68693 (8)0.0383 (3)
N20.66107 (16)0.19639 (15)0.71630 (8)0.0393 (3)
H2N0.669 (2)0.164 (2)0.7817 (14)0.052 (5)*
N30.61324 (14)0.20352 (14)0.55193 (8)0.0345 (3)
N40.51489 (16)−0.04181 (15)0.64256 (9)0.0398 (3)
H4A0.488 (2)−0.095 (2)0.5842 (13)0.049 (4)*
H4B0.564 (2)−0.106 (2)0.6948 (13)0.050 (4)*
N50.80901 (15)0.62905 (15)0.56803 (8)0.0388 (3)
C10.69411 (16)0.34759 (16)0.58805 (9)0.0331 (3)
C20.59494 (16)0.11150 (17)0.63532 (9)0.0343 (3)
C30.74353 (16)0.48955 (17)0.52229 (9)0.0343 (3)
C40.72299 (19)0.47748 (19)0.41755 (10)0.0425 (3)
H40.67580.37860.38730.051*
C50.77288 (19)0.6128 (2)0.35870 (11)0.0491 (4)
H50.75980.60760.28780.059*
C60.8419 (2)0.7554 (2)0.40516 (12)0.0486 (4)
H60.87810.84890.36680.058*
C70.85663 (19)0.75796 (19)0.50930 (12)0.0455 (4)
H70.90290.85610.54080.055*
U11U22U33U12U13U23
N10.0476 (6)0.0387 (6)0.0282 (5)−0.0007 (5)−0.0076 (4)0.0006 (4)
N20.0518 (7)0.0392 (6)0.0261 (6)−0.0013 (5)−0.0092 (5)0.0000 (5)
N30.0362 (5)0.0396 (6)0.0273 (5)0.0042 (4)−0.0059 (4)−0.0028 (4)
N40.0498 (7)0.0397 (6)0.0291 (6)−0.0021 (5)−0.0110 (5)−0.0001 (5)
N50.0420 (6)0.0409 (6)0.0332 (6)0.0030 (5)−0.0043 (5)0.0012 (5)
C10.0330 (6)0.0385 (7)0.0273 (6)0.0057 (5)−0.0056 (5)−0.0035 (5)
C20.0357 (6)0.0391 (7)0.0274 (6)0.0053 (5)−0.0068 (5)−0.0030 (5)
C30.0305 (6)0.0419 (7)0.0301 (6)0.0076 (5)−0.0028 (5)−0.0010 (5)
C40.0442 (7)0.0522 (8)0.0310 (7)0.0046 (6)−0.0016 (5)−0.0025 (6)
C50.0488 (8)0.0683 (10)0.0304 (7)0.0080 (7)0.0032 (6)0.0071 (7)
C60.0444 (8)0.0558 (9)0.0457 (8)0.0057 (7)0.0046 (6)0.0150 (7)
C70.0454 (8)0.0447 (8)0.0460 (8)0.0013 (6)−0.0035 (6)0.0050 (6)
N1—C11.3221 (16)N5—C31.3410 (17)
N1—N21.3708 (16)C1—C31.4729 (18)
N2—C21.3422 (16)C3—C41.3909 (18)
N2—H2N0.902 (19)C4—C51.380 (2)
N3—C21.3312 (17)C4—H40.94
N3—C11.3656 (16)C5—C61.374 (2)
N4—C21.3538 (18)C5—H50.94
N4—H4A0.896 (18)C6—C71.377 (2)
N4—H4B0.925 (17)C6—H60.94
N5—C71.3354 (18)C7—H70.94
C1—N1—N2102.14 (10)N5—C3—C4122.10 (13)
C2—N2—N1109.99 (11)N5—C3—C1116.99 (11)
C2—N2—H2N129.2 (11)C4—C3—C1120.91 (12)
N1—N2—H2N120.8 (11)C5—C4—C3119.01 (14)
C2—N3—C1102.81 (10)C5—C4—H4120.5
C2—N4—H4A116.4 (10)C3—C4—H4120.5
C2—N4—H4B112.7 (10)C6—C5—C4119.12 (14)
H4A—N4—H4B117.2 (14)C6—C5—H5120.4
C7—N5—C3117.65 (12)C4—C5—H5120.4
N1—C1—N3115.02 (12)C5—C6—C7118.36 (14)
N1—C1—C3122.04 (12)C5—C6—H6120.8
N3—C1—C3122.94 (11)C7—C6—H6120.8
N3—C2—N2110.03 (12)N5—C7—C6123.76 (15)
N3—C2—N4127.19 (11)N5—C7—H7118.1
N2—C2—N4122.71 (12)C6—C7—H7118.1
D—H···AD—HH···AD···AD—H···A
N2—H2N···N5i0.90 (2)2.01 (2)2.9010 (16)171 (1)
N4—H4A···N3ii0.90 (2)2.11 (2)2.9971 (16)172 (1)
N4—H4B···N1i0.93 (2)2.19 (2)3.0264 (16)151 (1)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2N⋯N5i0.90 (2)2.01 (2)2.9010 (16)171 (1)
N4—H4A⋯N3ii0.90 (2)2.11 (2)2.9971 (16)172 (1)
N4—H4B⋯N1i0.93 (2)2.19 (2)3.0264 (16)151 (1)

Symmetry codes: (i) ; (ii) .

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