Literature DB >> 21581572

1,3-Bis[4-(dimethyl-amino)benz-yl]-4,5,6,7-tetra-hydro-1H-1,3-diazepan-2-ium chloride.

Hakan Arslan, Don Vanderveer, Yetkin Gök, Ismail Ozdemir, Bekir Cetinkaya.   

Abstract

The title N-heterocyclic carbene derivative, C(23)H(33)N(4) (+)·Cl(-), has been synthesized and characterized by elemental analysis, (1)H and (13)C NMR, IR spectroscopy and a single-crystal X-ray diffraction study. Ions of the title compound are linked by three C-H⋯Cl inter-actions. The seven-membered 1,3-diazepane ring has a form inter-mediate between twist-chair and twist-boat.

Entities:  

Year:  2008        PMID: 21581572      PMCID: PMC2968033          DOI: 10.1107/S1600536808041603

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis, see: Özdemir et al. (2005 ▶); Yaşar et al. (2008 ▶). For general background, see: Hermann (2002 ▶); Littke & Fu (2002 ▶); Evans & Boeyens (1989 ▶). For puckering parameters, see: Cremer & Pople (1975 ▶). For related compounds, see: Arslan et al. (2007a ▶,b ▶,c ▶). For general background to the use of N-heterocyclic carbenes as phosphine mimics and in catalysis, see: Arduengo & Krafczyk (1998 ▶); Dullius et al. (1998 ▶); Glorius (2007 ▶); Hermann & Köcher (1997 ▶); Nolan (2006 ▶); Regitz (1996 ▶). For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

n class="Chemical">C23H33N4 +·n class="Chemical">Cl− M = 400.98 Orthorhombin class="Chemical">c, a = 22.663 (5) Å b = 10.081 (2) Å n class="Chemical">c = 9.6368 (19) Å V = 2201.7 (8) Å3 Z = 4 Mo Kα radiation μ = 0.19 mm−1 T = 153 (2) K 0.46 × 0.12 × 0.07 mm

Data collection

Rigaku Mercury CCD diffractometer Absorption correction: multi-scan (REQAB; Jacobson, 1998 ▶) T min = 0.918, T max = 0.987 14704 measured reflen class="Chemical">ctionpan>s 1947 independent reflen class="Chemical">ctions 1481 reflen class="Chemical">ctionpan>s with I > 2σ(I) R int = 0.053

Refinement

R[F 2 > 2σ(F 2)] = 0.059 wR(F 2) = 0.160 S = 1.10 1947 reflen class="Chemical">ctionpan>s 130 parameters H-atom parameters n class="Chemical">conpan>strained Δρmax = 0.28 e Å−3 Δρmin = −0.30 e Å−3 Data collection: CrystalClear (Rigaku/MSC, 2001 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808041603/hg2445sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808041603/hg2445Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C23H33N4+·ClF(000) = 864
Mr = 400.98Dx = 1.210 Mg m3
Orthorhombic, PbcnMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2n 2abCell parameters from 5004 reflections
a = 22.663 (5) Åθ = 3.1–26.4°
b = 10.081 (2) ŵ = 0.19 mm1
c = 9.6368 (19) ÅT = 153 K
V = 2201.7 (8) Å3Rod, colorless
Z = 40.46 × 0.12 × 0.07 mm
Rigaku Mercury CCD diffractometer1947 independent reflections
Radiation source: Sealed Tube1481 reflections with I > 2σ(I)
Graphite MonochromatorRint = 0.053
Detector resolution: 14.6306 pixels mm-1θmax = 25.1°, θmin = 3.1°
ω scansh = −27→23
Absorption correction: multi-scan (REQAB; Jacobson, 1998)k = −12→11
Tmin = 0.918, Tmax = 0.987l = −11→11
14704 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.059Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.160H-atom parameters constrained
S = 1.10w = 1/[σ2(Fo2) + (0.0629P)2 + 3.1587P] where P = (Fo2 + 2Fc2)/3
1947 reflections(Δ/σ)max < 0.001
130 parametersΔρmax = 0.28 e Å3
0 restraintsΔρmin = −0.30 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.50000.27328 (9)0.25000.0326 (3)
N10.53058 (10)0.3281 (2)0.8530 (2)0.0263 (5)
N20.81399 (11)0.3446 (3)0.8340 (3)0.0465 (8)
C10.50000.3809 (4)0.75000.0234 (8)
H10.50000.47610.75000.028*
C20.54103 (13)0.1885 (3)0.8905 (3)0.0320 (7)
H2A0.53910.18100.98970.038*
H2B0.58050.16560.86310.038*
C30.49952 (13)0.0887 (3)0.8287 (3)0.0299 (7)
H3A0.46020.10740.85990.036*
H3B0.51000.00190.86160.036*
C40.56701 (12)0.4207 (3)0.9380 (3)0.0286 (6)
H4A0.55880.40621.03450.034*
H4B0.55640.51040.91600.034*
C50.63188 (12)0.4015 (3)0.9123 (3)0.0280 (6)
C60.65910 (13)0.4560 (3)0.7968 (3)0.0361 (7)
H60.63590.50680.73270.043*
C70.71893 (14)0.4394 (3)0.7709 (4)0.0410 (8)
H70.73640.47910.69020.049*
C80.75396 (13)0.3648 (3)0.8622 (3)0.0359 (7)
C90.72698 (13)0.3100 (3)0.9785 (3)0.0359 (7)
H90.75000.25851.04250.043*
C100.66696 (13)0.3289 (3)1.0031 (3)0.0316 (7)
H100.64940.29091.08460.038*
C110.84333 (15)0.4411 (4)0.7441 (5)0.0577 (11)
H11A0.82430.44240.65520.087*
H11B0.88400.41660.73280.087*
H11C0.84100.52760.78540.087*
C120.85025 (15)0.2829 (4)0.9408 (4)0.0569 (11)
H12A0.85010.33741.02250.085*
H12B0.89000.27370.90740.085*
H12C0.83460.19700.96280.085*
U11U22U33U12U13U23
Cl10.0410 (6)0.0223 (5)0.0347 (5)0.0000.0031 (4)0.000
N10.0280 (12)0.0207 (11)0.0302 (12)−0.0008 (9)0.0021 (10)−0.0010 (10)
N20.0300 (14)0.0458 (17)0.064 (2)−0.0016 (12)0.0035 (13)−0.0117 (15)
C10.0210 (17)0.0196 (18)0.030 (2)0.0000.0053 (16)0.000
C20.0399 (16)0.0206 (14)0.0356 (16)0.0035 (12)−0.0043 (13)0.0019 (12)
C30.0376 (15)0.0191 (13)0.0331 (16)0.0013 (12)0.0030 (13)0.0035 (11)
C40.0303 (14)0.0239 (14)0.0315 (15)0.0006 (11)0.0013 (12)−0.0053 (12)
C50.0300 (15)0.0251 (14)0.0290 (15)−0.0003 (11)0.0000 (11)−0.0032 (12)
C60.0331 (16)0.0372 (17)0.0379 (17)0.0004 (13)0.0013 (13)0.0056 (14)
C70.0386 (17)0.0415 (18)0.0430 (19)−0.0055 (14)0.0073 (14)0.0058 (15)
C80.0299 (15)0.0327 (16)0.0450 (17)−0.0011 (12)0.0007 (14)−0.0093 (14)
C90.0353 (16)0.0350 (17)0.0373 (17)0.0069 (13)−0.0062 (13)−0.0036 (14)
C100.0348 (16)0.0299 (15)0.0300 (15)−0.0002 (12)0.0000 (12)−0.0013 (13)
C110.0358 (18)0.045 (2)0.092 (3)−0.0136 (15)0.0185 (19)−0.014 (2)
C120.0326 (17)0.067 (3)0.071 (3)0.0097 (17)−0.0076 (18)−0.024 (2)
N1—C11.322 (3)C5—C61.386 (4)
N1—C21.472 (3)C5—C101.391 (4)
N1—C41.491 (3)C6—C71.389 (4)
N2—C81.402 (4)C6—H60.9600
N2—C121.456 (5)C7—C81.404 (5)
N2—C111.462 (5)C7—H70.9600
C1—N1i1.322 (3)C8—C91.391 (4)
C1—H10.9600C9—C101.394 (4)
C2—C31.501 (4)C9—H90.9600
C2—H2A0.9600C10—H100.9600
C2—H2B0.9600C11—H11A0.9599
C3—C3i1.517 (6)C11—H11B0.9599
C3—H3A0.9600C11—H11C0.9599
C3—H3B0.9600C12—H12A0.9599
C4—C51.503 (4)C12—H12B0.9599
C4—H4A0.9600C12—H12C0.9599
C4—H4B0.9600
C1—N1—C2130.8 (3)C10—C5—C4121.5 (3)
C1—N1—C4116.8 (2)C5—C6—C7122.1 (3)
C2—N1—C4112.0 (2)C5—C6—H6119.0
C8—N2—C12118.2 (3)C7—C6—H6119.0
C8—N2—C11117.3 (3)C6—C7—C8120.3 (3)
C12—N2—C11116.5 (3)C6—C7—H7119.9
N1i—C1—N1132.6 (4)C8—C7—H7119.9
N1i—C1—H1113.7C9—C8—N2121.7 (3)
N1—C1—H1113.7C9—C8—C7118.0 (3)
N1—C2—C3116.3 (2)N2—C8—C7120.3 (3)
N1—C2—H2A108.2C8—C9—C10120.8 (3)
C3—C2—H2A108.2C8—C9—H9119.6
N1—C2—H2B108.2C10—C9—H9119.6
C3—C2—H2B108.2C5—C10—C9121.5 (3)
H2A—C2—H2B107.4C5—C10—H10119.2
C2—C3—C3i112.8 (2)C9—C10—H10119.2
C2—C3—H3A109.0N2—C11—H11A109.5
C3i—C3—H3A109.0N2—C11—H11B109.5
C2—C3—H3B109.0H11A—C11—H11B109.5
C3i—C3—H3B109.0N2—C11—H11C109.5
H3A—C3—H3B107.8H11A—C11—H11C109.5
N1—C4—C5111.8 (2)H11B—C11—H11C109.5
N1—C4—H4A109.3N2—C12—H12A109.5
C5—C4—H4A109.3N2—C12—H12B109.5
N1—C4—H4B109.3H12A—C12—H12B109.5
C5—C4—H4B109.3N2—C12—H12C109.5
H4A—C4—H4B107.9H12A—C12—H12C109.5
C6—C5—C10117.4 (3)H12B—C12—H12C109.5
C6—C5—C4121.1 (3)
C2—N1—C1—N1i−0.7 (2)C12—N2—C8—C9−10.0 (4)
C4—N1—C1—N1i171.0 (2)C11—N2—C8—C9−157.9 (3)
C1—N1—C2—C3−18.0 (4)C12—N2—C8—C7171.5 (3)
C4—N1—C2—C3170.0 (2)C11—N2—C8—C723.6 (5)
N1—C2—C3—C3i59.9 (4)C6—C7—C8—C9−0.5 (5)
C1—N1—C4—C5−109.3 (2)C6—C7—C8—N2178.0 (3)
C2—N1—C4—C563.9 (3)N2—C8—C9—C10−178.6 (3)
N1—C4—C5—C680.0 (3)C7—C8—C9—C10−0.1 (5)
N1—C4—C5—C10−100.1 (3)C6—C5—C10—C9−0.8 (4)
C10—C5—C6—C70.2 (5)C4—C5—C10—C9179.3 (3)
C4—C5—C6—C7−179.9 (3)C8—C9—C10—C50.7 (5)
C5—C6—C7—C80.4 (5)
D—H···AD—HH···AD···AD—H···A
C1—H1···Cl1ii0.962.533.486 (4)180
C2—H2A···Cl1iii0.962.823.688 (3)151
C4—H4A···Cl1iii0.962.813.682 (3)152
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C1—H1⋯Cl1i0.962.533.486 (4)180
C2—H2A⋯Cl1ii0.962.823.688 (3)151
C4—H4A⋯Cl1ii0.962.813.682 (3)152

Symmetry codes: (i) ; (ii) .

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1.  1,3-Bis(4-tert-butyl-benz-yl)-4,5-dihydro-imidazolium chloride monohydrate.

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