| Literature DB >> 21581543 |
Toshiki Yamaguchi1, Shigeyuki Masaoka, Ken Sakai.
Abstract
In the title compound, (C(6)H(16)N)(2)[Fe(2)(C(4)H(2)N(2)S(2))(4)]·2CH(4)O, the [Fe(III)(pdt)(2)](-) anion (pdt is pyrazine-2,3-dithiol-ate) forms a centrosymmetric dimer supported by two Fe(III)-S bonds [Fe-S = 2.4787 (4) Å]. In the crystal structure, dimers form a one-dimensional stack along the b axis via π-π stacking inter-actions, the inter-planar separation between adjacent dimers being 3.51 (2) Å. The methanol solvent mol-ecule is involved in two hydrogen bonds in which the hydroxyl group acts as a hydrogen-bond donor to the N atom of a pdt ligand and the O atom acts as an acceptor for the NH group of the triethyl-ammonium cation.Entities:
Year: 2008 PMID: 21581543 PMCID: PMC2967914 DOI: 10.1107/S1600536808041949
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| (C6H16N)2[Fe2(C4H2N2S2)4]·2CH4O | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yn | Cell parameters from 7956 reflections |
| θ = 2.3–27.5° | |
| µ = 1.19 mm−1 | |
| β = 95.293 (1)° | Needles, black |
| 0.33 × 0.18 × 0.16 mm | |
| Bruker SMART APEX CCD-detector diffractometer | 4048 independent reflections |
| Radiation source: rotating anode with a mirror focusing unit | 3824 reflections with |
| graphite | |
| φ and ω scans | θmax = 26.4°, θmin = 2.3° |
| Absorption correction: multi-scan ( | |
| 10059 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 4048 reflections | (Δ/σ)max = 0.001 |
| 240 parameters | Δρmax = 0.40 e Å−3 |
| 0 restraints | Δρmin = −0.19 e Å−3 |
| Experimental. The first 50 frames were rescanned at the end of data collection to evaluate any possible decay phenomenon. Since it was judged to be negligible, no decay correction was applied to the data. |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes.Least-squares planes ( |
| Refinement. Refinement of |
| Fe1 | 0.404540 (13) | 0.93135 (3) | 0.023150 (11) | 0.01057 (6) | |
| S1 | 0.54285 (2) | 0.79904 (4) | 0.029127 (18) | 0.01130 (8) | |
| S2 | 0.35609 (2) | 0.79099 (5) | −0.082403 (19) | 0.01420 (8) | |
| S3 | 0.25466 (2) | 1.00013 (5) | 0.034182 (19) | 0.01363 (8) | |
| S4 | 0.43700 (2) | 0.97513 (4) | 0.147331 (18) | 0.01193 (8) | |
| O1 | 0.89754 (8) | 0.60915 (14) | −0.01530 (6) | 0.0209 (2) | |
| H24 | 0.8767 | 0.6838 | −0.0459 | 0.031* | |
| N1 | 0.61230 (9) | 0.57967 (15) | −0.06370 (7) | 0.0151 (3) | |
| N2 | 0.44848 (9) | 0.57864 (16) | −0.16542 (7) | 0.0163 (3) | |
| N3 | 0.18638 (8) | 1.19999 (16) | 0.13603 (7) | 0.0147 (2) | |
| N4 | 0.34506 (9) | 1.16211 (16) | 0.24079 (7) | 0.0141 (2) | |
| N5 | 0.86540 (8) | 0.70235 (16) | 0.13156 (7) | 0.0151 (3) | |
| H20 | 0.8819 | 0.6706 | 0.0841 | 0.018* | |
| C1 | 0.53659 (10) | 0.67055 (18) | −0.05203 (8) | 0.0122 (3) | |
| C2 | 0.60532 (11) | 0.48707 (19) | −0.12700 (9) | 0.0171 (3) | |
| H1 | 0.6571 | 0.4184 | −0.1377 | 0.021* | |
| C3 | 0.45350 (10) | 0.67025 (18) | −0.10198 (8) | 0.0132 (3) | |
| C4 | 0.52528 (11) | 0.48836 (19) | −0.17707 (8) | 0.0178 (3) | |
| H2 | 0.5246 | 0.4224 | −0.2218 | 0.021* | |
| C5 | 0.26017 (10) | 1.10755 (18) | 0.12000 (8) | 0.0124 (3) | |
| C6 | 0.19204 (10) | 1.27363 (19) | 0.20475 (8) | 0.0167 (3) | |
| H3 | 0.1412 | 1.3416 | 0.2179 | 0.020* | |
| C7 | 0.34105 (10) | 1.09206 (18) | 0.17242 (8) | 0.0119 (3) | |
| C8 | 0.26953 (10) | 1.25302 (19) | 0.25642 (8) | 0.0161 (3) | |
| H4 | 0.2696 | 1.3047 | 0.3047 | 0.019* | |
| C9 | 0.92078 (11) | 0.5916 (2) | 0.18858 (8) | 0.0181 (3) | |
| H5 | 0.8909 | 0.5936 | 0.2368 | 0.022* | |
| H6 | 0.9856 | 0.6366 | 0.1985 | 0.022* | |
| C10 | 0.92556 (12) | 0.4119 (2) | 0.16109 (9) | 0.0229 (3) | |
| H7 | 0.8615 | 0.3687 | 0.1489 | 0.034* | |
| H8 | 0.9583 | 0.3423 | 0.2008 | 0.034* | |
| H9 | 0.9599 | 0.4082 | 0.1158 | 0.034* | |
| C11 | 0.76030 (10) | 0.6761 (2) | 0.13087 (9) | 0.0197 (3) | |
| H10 | 0.7471 | 0.5538 | 0.1296 | 0.024* | |
| H11 | 0.7289 | 0.7259 | 0.0840 | 0.024* | |
| C12 | 0.71813 (11) | 0.7525 (2) | 0.19835 (9) | 0.0253 (4) | |
| H13 | 0.7530 | 0.7127 | 0.2451 | 0.038* | |
| H12 | 0.6518 | 0.7189 | 0.1977 | 0.038* | |
| H14 | 0.7223 | 0.8754 | 0.1958 | 0.038* | |
| C13 | 0.89199 (11) | 0.8848 (2) | 0.14175 (9) | 0.0193 (3) | |
| H16 | 0.8950 | 0.9141 | 0.1961 | 0.023* | |
| H15 | 0.8428 | 0.9557 | 0.1144 | 0.023* | |
| C14 | 0.98672 (13) | 0.9219 (2) | 0.11225 (10) | 0.0283 (4) | |
| H19 | 1.0362 | 0.8578 | 0.1416 | 0.042* | |
| H18 | 1.0004 | 1.0425 | 0.1173 | 0.042* | |
| H17 | 0.9846 | 0.8894 | 0.0589 | 0.042* | |
| C16 | 0.85896 (13) | 0.4489 (2) | −0.03924 (10) | 0.0263 (4) | |
| H21 | 0.8600 | 0.4378 | −0.0942 | 0.040* | |
| H22 | 0.7938 | 0.4406 | −0.0260 | 0.040* | |
| H23 | 0.8968 | 0.3588 | −0.0139 | 0.040* |
| Fe1 | 0.01022 (10) | 0.01220 (11) | 0.00912 (10) | 0.00046 (7) | 0.00004 (7) | −0.00049 (7) |
| S1 | 0.01119 (16) | 0.01259 (17) | 0.00985 (15) | 0.00098 (12) | −0.00040 (12) | −0.00008 (12) |
| S2 | 0.01256 (17) | 0.01665 (18) | 0.01285 (16) | 0.00100 (13) | −0.00173 (13) | −0.00337 (13) |
| S3 | 0.01063 (16) | 0.01853 (19) | 0.01144 (16) | 0.00053 (13) | −0.00050 (12) | −0.00270 (13) |
| S4 | 0.01160 (16) | 0.01452 (17) | 0.00948 (16) | 0.00168 (13) | 0.00002 (12) | 0.00010 (12) |
| O1 | 0.0232 (6) | 0.0213 (6) | 0.0173 (5) | 0.0043 (5) | −0.0036 (4) | −0.0003 (4) |
| N1 | 0.0165 (6) | 0.0126 (6) | 0.0166 (6) | 0.0007 (5) | 0.0039 (5) | 0.0010 (5) |
| N2 | 0.0208 (6) | 0.0141 (6) | 0.0140 (6) | −0.0008 (5) | 0.0009 (5) | −0.0018 (5) |
| N3 | 0.0138 (6) | 0.0149 (6) | 0.0156 (6) | −0.0002 (5) | 0.0020 (5) | −0.0004 (5) |
| N4 | 0.0167 (6) | 0.0131 (6) | 0.0125 (6) | 0.0002 (5) | 0.0017 (5) | −0.0004 (5) |
| N5 | 0.0136 (6) | 0.0187 (7) | 0.0124 (6) | 0.0002 (5) | −0.0013 (5) | 0.0010 (5) |
| C1 | 0.0151 (7) | 0.0104 (7) | 0.0111 (6) | −0.0007 (5) | 0.0019 (5) | 0.0008 (5) |
| C2 | 0.0192 (7) | 0.0120 (7) | 0.0211 (7) | 0.0014 (6) | 0.0067 (6) | −0.0012 (6) |
| C3 | 0.0156 (7) | 0.0109 (7) | 0.0132 (6) | −0.0008 (5) | 0.0020 (5) | 0.0010 (5) |
| C4 | 0.0253 (8) | 0.0129 (7) | 0.0157 (7) | 0.0000 (6) | 0.0053 (6) | −0.0027 (6) |
| C5 | 0.0133 (7) | 0.0120 (7) | 0.0122 (6) | −0.0016 (5) | 0.0023 (5) | 0.0011 (5) |
| C6 | 0.0164 (7) | 0.0158 (7) | 0.0183 (7) | 0.0017 (6) | 0.0043 (6) | −0.0013 (6) |
| C7 | 0.0137 (7) | 0.0101 (7) | 0.0120 (6) | −0.0013 (5) | 0.0018 (5) | 0.0019 (5) |
| C8 | 0.0197 (7) | 0.0156 (7) | 0.0134 (7) | 0.0003 (6) | 0.0035 (6) | −0.0017 (5) |
| C9 | 0.0147 (7) | 0.0233 (8) | 0.0155 (7) | 0.0015 (6) | −0.0036 (6) | 0.0039 (6) |
| C10 | 0.0240 (8) | 0.0231 (9) | 0.0207 (8) | 0.0039 (6) | −0.0017 (6) | 0.0045 (6) |
| C11 | 0.0122 (7) | 0.0259 (8) | 0.0201 (7) | −0.0001 (6) | −0.0033 (6) | 0.0002 (6) |
| C12 | 0.0169 (8) | 0.0336 (9) | 0.0255 (8) | 0.0008 (7) | 0.0028 (6) | −0.0024 (7) |
| C13 | 0.0208 (8) | 0.0184 (8) | 0.0177 (7) | −0.0012 (6) | −0.0033 (6) | 0.0001 (6) |
| C14 | 0.0294 (9) | 0.0274 (9) | 0.0283 (9) | −0.0089 (7) | 0.0048 (7) | −0.0002 (7) |
| C16 | 0.0303 (9) | 0.0248 (9) | 0.0228 (8) | 0.0009 (7) | −0.0038 (7) | −0.0038 (7) |
| Fe1—S1 | 2.2264 (4) | C9—C10 | 1.513 (2) |
| Fe1—S3 | 2.2289 (4) | C11—C12 | 1.515 (2) |
| Fe1—S2 | 2.2341 (4) | C13—C14 | 1.520 (2) |
| Fe1—S4 | 2.2367 (4) | N5—H20 | 0.9300 |
| Fe1—S1i | 2.4787 (4) | C2—H1 | 0.9500 |
| S1—C1 | 1.7611 (14) | C4—H2 | 0.9500 |
| S1—Fe1i | 2.4787 (4) | C6—H3 | 0.9500 |
| S2—C3 | 1.7477 (15) | C8—H4 | 0.9500 |
| S3—C5 | 1.7415 (14) | C9—H5 | 0.9900 |
| S4—C7 | 1.7438 (14) | C9—H6 | 0.9900 |
| O1—C16 | 1.436 (2) | C10—H7 | 0.9800 |
| O1—H24 | 0.8400 | C10—H8 | 0.9800 |
| N1—C1 | 1.3297 (19) | C10—H9 | 0.9800 |
| N1—C2 | 1.339 (2) | C11—H10 | 0.9900 |
| N2—C3 | 1.3372 (19) | C11—H11 | 0.9900 |
| N2—C4 | 1.340 (2) | C12—H13 | 0.9800 |
| N3—C5 | 1.3341 (19) | C12—H12 | 0.9800 |
| N3—C6 | 1.3483 (19) | C12—H14 | 0.9800 |
| N4—C7 | 1.3315 (18) | C13—H16 | 0.9900 |
| N4—C8 | 1.3456 (19) | C13—H15 | 0.9900 |
| N5—C13 | 1.506 (2) | C14—H19 | 0.9800 |
| N5—C9 | 1.5079 (18) | C14—H18 | 0.9800 |
| N5—C11 | 1.5097 (19) | C14—H17 | 0.9800 |
| C1—C3 | 1.411 (2) | C16—H21 | 0.9800 |
| C2—C4 | 1.379 (2) | C16—H22 | 0.9800 |
| C5—C7 | 1.417 (2) | C16—H23 | 0.9800 |
| C6—C8 | 1.378 (2) | ||
| C1···C1ii | 3.493 (3) | ||
| S1—Fe1—S3 | 164.042 (16) | C4—C2—H1 | 119.0 |
| S1—Fe1—S2 | 90.420 (15) | N2—C4—H2 | 118.6 |
| S3—Fe1—S2 | 88.401 (15) | C2—C4—H2 | 118.6 |
| S1—Fe1—S4 | 85.705 (14) | N3—C6—H3 | 119.1 |
| S3—Fe1—S4 | 89.299 (14) | C8—C6—H3 | 119.1 |
| S2—Fe1—S4 | 157.445 (17) | N4—C8—H4 | 118.9 |
| S1—Fe1—S1i | 97.462 (14) | C6—C8—H4 | 118.9 |
| S3—Fe1—S1i | 98.369 (15) | N5—C9—H5 | 109.3 |
| S2—Fe1—S1i | 101.461 (15) | C10—C9—H5 | 109.3 |
| S4—Fe1—S1i | 101.073 (15) | N5—C9—H6 | 109.3 |
| C1—S1—Fe1 | 104.91 (5) | C10—C9—H6 | 109.3 |
| C1—S1—Fe1i | 100.94 (5) | H5—C9—H6 | 107.9 |
| Fe1—S1—Fe1i | 82.538 (14) | C9—C10—H7 | 109.5 |
| C3—S2—Fe1 | 104.58 (5) | C9—C10—H8 | 109.5 |
| C5—S3—Fe1 | 103.35 (5) | H7—C10—H8 | 109.5 |
| C7—S4—Fe1 | 103.82 (5) | C9—C10—H9 | 109.5 |
| C1—N1—C2 | 115.52 (13) | H7—C10—H9 | 109.5 |
| C3—N2—C4 | 116.15 (13) | H8—C10—H9 | 109.5 |
| C5—N3—C6 | 116.71 (12) | N5—C11—H10 | 108.8 |
| C7—N4—C8 | 116.39 (12) | C12—C11—H10 | 108.8 |
| C13—N5—C9 | 111.84 (11) | N5—C11—H11 | 108.8 |
| C13—N5—C11 | 111.85 (12) | C12—C11—H11 | 108.8 |
| C9—N5—C11 | 112.41 (12) | H10—C11—H11 | 107.7 |
| N1—C1—C3 | 123.08 (13) | C11—C12—H13 | 109.5 |
| N1—C1—S1 | 117.51 (11) | C11—C12—H12 | 109.5 |
| C3—C1—S1 | 119.40 (11) | H13—C12—H12 | 109.5 |
| N1—C2—C4 | 121.97 (14) | C11—C12—H14 | 109.5 |
| N2—C3—C1 | 120.42 (13) | H13—C12—H14 | 109.5 |
| N2—C3—S2 | 119.00 (11) | H12—C12—H14 | 109.5 |
| C1—C3—S2 | 120.58 (11) | N5—C13—H16 | 109.3 |
| N2—C4—C2 | 122.84 (14) | C14—C13—H16 | 109.3 |
| N3—C5—C7 | 121.06 (13) | N5—C13—H15 | 109.3 |
| N3—C5—S3 | 118.93 (11) | C14—C13—H15 | 109.3 |
| C7—C5—S3 | 119.98 (11) | H16—C13—H15 | 108.0 |
| N3—C6—C8 | 121.84 (14) | C13—C14—H19 | 109.5 |
| N4—C7—C5 | 121.71 (13) | C13—C14—H18 | 109.5 |
| N4—C7—S4 | 119.13 (11) | H19—C14—H18 | 109.5 |
| C5—C7—S4 | 119.14 (11) | C13—C14—H17 | 109.5 |
| N4—C8—C6 | 122.20 (13) | H19—C14—H17 | 109.5 |
| N5—C9—C10 | 111.80 (12) | H18—C14—H17 | 109.5 |
| N5—C11—C12 | 113.75 (12) | O1—C16—H21 | 109.5 |
| N5—C13—C14 | 111.52 (13) | O1—C16—H22 | 109.5 |
| C16—O1—H24 | 109.5 | H21—C16—H22 | 109.5 |
| C13—N5—H20 | 106.8 | O1—C16—H23 | 109.5 |
| C9—N5—H20 | 106.8 | H21—C16—H23 | 109.5 |
| C11—N5—H20 | 106.8 | H22—C16—H23 | 109.5 |
| N1—C2—H1 | 119.0 | ||
| C2—N1—C1—C3 | 0.5 (2) | Fe1—S3—C5—N3 | 164.68 (10) |
| C2—N1—C1—S1 | −178.40 (11) | Fe1—S3—C5—C7 | −17.12 (12) |
| Fe1—S1—C1—N1 | 178.17 (10) | C5—N3—C6—C8 | −0.8 (2) |
| Fe1i—S1—C1—N1 | 93.07 (11) | C8—N4—C7—C5 | −2.2 (2) |
| Fe1—S1—C1—C3 | −0.74 (12) | C8—N4—C7—S4 | 178.97 (11) |
| Fe1i—S1—C1—C3 | −85.84 (11) | N3—C5—C7—N4 | 3.2 (2) |
| C1—N1—C2—C4 | 0.9 (2) | S3—C5—C7—N4 | −174.98 (11) |
| C4—N2—C3—C1 | 0.9 (2) | N3—C5—C7—S4 | −177.96 (11) |
| C4—N2—C3—S2 | −179.75 (11) | S3—C5—C7—S4 | 3.87 (16) |
| N1—C1—C3—N2 | −1.4 (2) | Fe1—S4—C7—N4 | −169.57 (10) |
| S1—C1—C3—N2 | 177.43 (11) | Fe1—S4—C7—C5 | 11.55 (12) |
| N1—C1—C3—S2 | 179.20 (11) | C7—N4—C8—C6 | −0.2 (2) |
| S1—C1—C3—S2 | −1.95 (17) | N3—C6—C8—N4 | 1.8 (2) |
| Fe1—S2—C3—N2 | −175.86 (10) | C13—N5—C9—C10 | −156.73 (13) |
| Fe1—S2—C3—C1 | 3.53 (12) | C11—N5—C9—C10 | 76.48 (16) |
| C3—N2—C4—C2 | 0.5 (2) | C13—N5—C11—C12 | −52.48 (17) |
| N1—C2—C4—N2 | −1.5 (2) | C9—N5—C11—C12 | 74.31 (17) |
| C6—N3—C5—C7 | −1.5 (2) | C9—N5—C13—C14 | 75.40 (15) |
| C6—N3—C5—S3 | 176.64 (11) | C11—N5—C13—C14 | −157.50 (13) |
| H··· | ||||
| O1—H24···N3i | 0.84 | 1.99 | 2.8014 (17) | 163 |
| N5—H20···O1 | 0.93 | 1.86 | 2.7880 (17) | 172 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O1—H24⋯N3i | 0.84 | 1.99 | 2.8014 (17) | 163 |
| N5—H20⋯O1 | 0.93 | 1.86 | 2.7880 (17) | 172 |
Symmetry code: (i) .