Literature DB >> 21581529

(2,2'-Bipyridine-κN,N')iodido(piperidine-1-carbodithio-ato-κS,S')copper(II).

Le-Qing Fan1.   

Abstract

In the title compound, [Cu(C(6)H(10)n class="Chemical">NS(2))I(C(10)H(8)N(2))], the Cu(II) ion is coordinated by one iodide ion, two N atoms of the bipyridine ligand and two S atoms from the piperidine-carbodithio-ate ligand in a distorted square-pyramidal environment. π-π stacking inter-actions, with centroid-centroid distances of 3.643 (4) Å, between pyridyl rings of the bipyridyl ligands of neighbouring mol-ecules lead to chains propagating parallel to the a axis.

Entities:  

Year:  2008        PMID: 21581529      PMCID: PMC2967849          DOI: 10.1107/S1600536808039901

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to transition n class="Chemical">metal complexes, see: Engelhardt et al. (1988 ▶); Fernández et al. (2000 ▶); Koh et al. (2003 ▶); Noro et al. (2000 ▶); Yaghi et al. (1998 ▶).

Experimental

Crystal data

[Cu(C6H10NS2)I(C10n class="Species">H8N2)] M = 506.89 Monoclinic, a = 6.532 (3) Å b = 16.859 (7) Å c = 17.578 (7) Å β = 108.047 (14)° V = 1840.5 (14) Å3 Z = 4 Mo Kα radiation μ = 3.09 mm−1 T = 293 (2) K 0.45 × 0.08 × 0.05 mm

Data collection

Rigaku Mercury CCD diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2000 ▶) T min = 0.751, T max = 1.000 (expected range = 0.643–0.857) 13746 measured reflections 3946 independent reflections 3389 reflections with I > 2σ(I) R int = 0.036

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.108 S = 1.08 3946 reflections 208 parameters H-atom parameters constrained Δρmax = 0.52 e Å−3 Δρmin = −0.63 e Å−3 Data collection: CrystalClear (Rigaku, 2000 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808039901/ez2153sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808039901/ez2153Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu(C6H10NS2)I(C10H8N2)]F(000) = 996
Mr = 506.89Dx = 1.829 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3988 reflections
a = 6.532 (3) Åθ = 3.3–27.5°
b = 16.859 (7) ŵ = 3.09 mm1
c = 17.578 (7) ÅT = 293 K
β = 108.047 (14)°Prism, black
V = 1840.5 (14) Å30.45 × 0.08 × 0.05 mm
Z = 4
Rigaku Mercury CCD diffractometer3946 independent reflections
Radiation source: Sealed Tube3389 reflections with I > 2σ(I)
Graphite MonochromatorRint = 0.036
ω scansθmax = 27.5°, θmin = 2.4°
Absorption correction: multi-scan (CrystalClear; Rigaku,2000)h = −8→6
Tmin = 0.751, Tmax = 1.000k = −21→21
13746 measured reflectionsl = −22→22
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.108H-atom parameters constrained
S = 1.09w = 1/[σ2(Fo2) + (0.043P)2 + 2.8277P] where P = (Fo2 + 2Fc2)/3
3946 reflections(Δ/σ)max = 0.001
208 parametersΔρmax = 0.52 e Å3
0 restraintsΔρmin = −0.63 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cu10.43714 (10)0.66212 (3)0.42086 (3)0.04099 (17)
I10.19321 (6)0.80141 (2)0.36188 (2)0.05420 (14)
S10.6396 (2)0.64039 (8)0.33518 (8)0.0502 (3)
S20.2619 (3)0.55763 (9)0.34096 (8)0.0586 (4)
N10.4731 (7)0.5184 (2)0.2378 (2)0.0423 (9)
N20.6611 (7)0.7232 (2)0.5076 (2)0.0401 (9)
N30.3271 (7)0.6421 (2)0.5154 (2)0.0420 (9)
C10.4607 (8)0.5651 (3)0.2965 (3)0.0386 (10)
C20.6306 (8)0.5319 (3)0.1943 (3)0.0496 (12)
H2A0.70440.48280.19070.059*
H2B0.73700.57060.22250.059*
C30.5104 (9)0.5620 (3)0.1113 (3)0.0556 (14)
H3A0.61060.56930.08110.067*
H3B0.44590.61300.11540.067*
C40.3347 (10)0.5035 (4)0.0674 (3)0.0620 (15)
H4A0.25300.52550.01600.074*
H4B0.40040.45440.05780.074*
C50.1852 (9)0.4865 (3)0.1159 (3)0.0533 (13)
H5A0.10570.53420.11940.064*
H5B0.08220.44610.08910.064*
C60.3075 (9)0.4585 (3)0.1993 (3)0.0499 (13)
H6A0.20940.45150.23040.060*
H6B0.37570.40790.19660.060*
C70.8254 (8)0.7641 (3)0.4972 (3)0.0464 (12)
H7A0.84060.76630.44640.056*
C80.9733 (9)0.8031 (3)0.5591 (3)0.0537 (13)
H8A1.08450.83230.55030.064*
C90.9520 (10)0.7979 (3)0.6347 (4)0.0615 (16)
H9A1.05150.82260.67770.074*
C100.7829 (9)0.7558 (3)0.6462 (3)0.0553 (14)
H10A0.76750.75190.69690.066*
C110.6367 (8)0.7197 (3)0.5814 (3)0.0430 (11)
C120.4453 (9)0.6746 (3)0.5851 (3)0.0417 (11)
C130.3853 (10)0.6676 (3)0.6542 (3)0.0528 (13)
H13A0.46620.69170.70160.063*
C140.2037 (10)0.6243 (3)0.6510 (3)0.0587 (15)
H14A0.16360.61730.69700.070*
C150.0828 (10)0.5918 (3)0.5800 (4)0.0614 (16)
H15A−0.04170.56340.57690.074*
C160.1483 (9)0.6016 (3)0.5129 (3)0.0515 (13)
H16A0.06610.57940.46460.062*
U11U22U33U12U13U23
Cu10.0480 (4)0.0472 (3)0.0298 (3)−0.0078 (3)0.0150 (3)−0.0058 (2)
I10.0605 (3)0.0538 (2)0.0489 (2)0.00754 (16)0.01783 (18)0.01277 (15)
S10.0491 (8)0.0629 (8)0.0430 (6)−0.0169 (6)0.0207 (6)−0.0195 (6)
S20.0670 (10)0.0688 (8)0.0495 (7)−0.0287 (7)0.0322 (7)−0.0201 (6)
N10.043 (3)0.048 (2)0.0346 (19)−0.0025 (18)0.0103 (18)−0.0079 (16)
N20.043 (3)0.0428 (19)0.0308 (18)0.0023 (17)0.0068 (17)−0.0013 (15)
N30.057 (3)0.0387 (19)0.0343 (19)0.0032 (18)0.0195 (18)0.0019 (15)
C10.044 (3)0.040 (2)0.031 (2)−0.002 (2)0.011 (2)−0.0012 (17)
C20.043 (3)0.062 (3)0.042 (3)−0.001 (2)0.011 (2)−0.017 (2)
C30.060 (4)0.066 (3)0.042 (3)−0.010 (3)0.019 (3)−0.003 (2)
C40.069 (4)0.070 (4)0.038 (3)−0.011 (3)0.003 (3)−0.004 (3)
C50.056 (4)0.045 (3)0.047 (3)−0.010 (2)−0.001 (3)−0.001 (2)
C60.065 (4)0.040 (2)0.042 (3)−0.012 (2)0.013 (2)−0.007 (2)
C70.047 (3)0.048 (3)0.044 (3)−0.005 (2)0.013 (2)−0.002 (2)
C80.048 (3)0.048 (3)0.058 (3)−0.002 (2)0.005 (3)−0.008 (2)
C90.060 (4)0.053 (3)0.054 (3)0.001 (3)−0.008 (3)−0.019 (3)
C100.067 (4)0.052 (3)0.037 (3)0.012 (3)0.003 (3)−0.007 (2)
C110.050 (3)0.044 (2)0.030 (2)0.014 (2)0.006 (2)−0.0001 (18)
C120.058 (3)0.042 (2)0.027 (2)0.012 (2)0.016 (2)0.0019 (17)
C130.071 (4)0.054 (3)0.037 (3)0.017 (3)0.022 (3)0.010 (2)
C140.085 (5)0.058 (3)0.046 (3)0.021 (3)0.038 (3)0.013 (2)
C150.082 (4)0.046 (3)0.073 (4)0.007 (3)0.048 (3)0.006 (3)
C160.067 (4)0.045 (3)0.052 (3)−0.004 (2)0.033 (3)−0.004 (2)
Cu1—N32.033 (4)C5—C61.510 (7)
Cu1—N22.035 (4)C5—H5A0.9700
Cu1—S12.3205 (15)C5—H5B0.9700
Cu1—S22.3218 (15)C6—H6A0.9700
Cu1—I12.8470 (11)C6—H6B0.9700
S1—C11.717 (5)C7—C81.379 (7)
S2—C11.716 (5)C7—H7A0.9300
N1—C11.320 (6)C8—C91.380 (8)
N1—C21.476 (6)C8—H8A0.9300
N1—C61.482 (6)C9—C101.379 (9)
N2—C71.335 (6)C9—H9A0.9300
N2—C111.357 (6)C10—C111.380 (7)
N3—C161.342 (6)C10—H10A0.9300
N3—C121.345 (6)C11—C121.481 (7)
C2—C31.514 (7)C12—C131.392 (6)
C2—H2A0.9700C13—C141.380 (8)
C2—H2B0.9700C13—H13A0.9300
C3—C41.529 (7)C14—C151.369 (8)
C3—H3A0.9700C14—H14A0.9300
C3—H3B0.9700C15—C161.384 (7)
C4—C51.511 (8)C15—H15A0.9300
C4—H4A0.9700C16—H16A0.9300
C4—H4B0.9700
N3—Cu1—N279.95 (16)C6—C5—C4111.5 (5)
N3—Cu1—S1157.11 (12)C6—C5—H5A109.3
N2—Cu1—S198.30 (12)C4—C5—H5A109.3
N3—Cu1—S297.80 (12)C6—C5—H5B109.3
N2—Cu1—S2160.43 (12)C4—C5—H5B109.3
S1—Cu1—S276.17 (5)H5A—C5—H5B108.0
N3—Cu1—I197.76 (11)N1—C6—C5108.8 (4)
N2—Cu1—I192.69 (11)N1—C6—H6A109.9
S1—Cu1—I1105.13 (5)C5—C6—H6A109.9
S2—Cu1—I1106.86 (6)N1—C6—H6B109.9
C1—S1—Cu185.37 (16)C5—C6—H6B109.9
C1—S2—Cu185.37 (16)H6A—C6—H6B108.3
C1—N1—C2122.3 (4)N2—C7—C8122.3 (5)
C1—N1—C6123.4 (4)N2—C7—H7A118.8
C2—N1—C6113.3 (4)C8—C7—H7A118.8
C7—N2—C11119.4 (4)C7—C8—C9118.3 (6)
C7—N2—Cu1125.5 (3)C7—C8—H8A120.8
C11—N2—Cu1115.1 (3)C9—C8—H8A120.8
C16—N3—C12119.0 (4)C10—C9—C8119.9 (5)
C16—N3—Cu1125.6 (3)C10—C9—H9A120.1
C12—N3—Cu1115.4 (3)C8—C9—H9A120.1
N1—C1—S2123.5 (4)C9—C10—C11119.2 (5)
N1—C1—S1123.5 (4)C9—C10—H10A120.4
S2—C1—S1113.1 (2)C11—C10—H10A120.4
N1—C2—C3108.3 (4)N2—C11—C10120.9 (5)
N1—C2—H2A110.0N2—C11—C12114.5 (4)
C3—C2—H2A110.0C10—C11—C12124.7 (5)
N1—C2—H2B110.0N3—C12—C13121.5 (5)
C3—C2—H2B110.0N3—C12—C11115.1 (4)
H2A—C2—H2B108.4C13—C12—C11123.4 (5)
C2—C3—C4110.8 (4)C14—C13—C12118.7 (5)
C2—C3—H3A109.5C14—C13—H13A120.6
C4—C3—H3A109.5C12—C13—H13A120.6
C2—C3—H3B109.5C15—C14—C13119.6 (5)
C4—C3—H3B109.5C15—C14—H14A120.2
H3A—C3—H3B108.1C13—C14—H14A120.2
C5—C4—C3110.6 (4)C14—C15—C16119.1 (6)
C5—C4—H4A109.5C14—C15—H15A120.4
C3—C4—H4A109.5C16—C15—H15A120.4
C5—C4—H4B109.5N3—C16—C15121.9 (5)
C3—C4—H4B109.5N3—C16—H16A119.1
H4A—C4—H4B108.1C15—C16—H16A119.1
  2 in total

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Authors: 
Journal:  Angew Chem Int Ed Engl       Date:  2000-06-16       Impact factor: 15.336

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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