Literature DB >> 21581505

trans-N,N,N',N'-Tetra-kis(carboxy-meth-yl)cyclo-hexane-1,2-diammonium tetra-chloridocadmium(II) tetra-hydrate.

Ping Lian, Qiao-Sheng Hu, Yong-Rong Xie, Hong-Xu Guo.   

Abstract

In the title compound, (C(14)H(24)N(2)O(8))[CdCl(4)]·4H(2)O, the Cd atom in the tetra-hedral [CdCl(4)](2-) anion lies on a twofold rotation axis, and the diprotonated organic mol-ecule, trans-N,N,N',N'-tetra-kis(carb-oxy-meth-yl)cyclo-hexane-1,2-diammon-ium, has 2 symmetry with the twofold rotation axis running through the mid-point of two C-C bonds in the cyclo-hexane unit. In the crystal structure, classical intra-molecular O-H⋯O and N-H⋯O and inter-molecular O-H⋯O, N-H⋯O, O-H⋯Cl and C-H⋯Cl hydrogen bonds are observed.

Entities:  

Year:  2008        PMID: 21581505      PMCID: PMC2967879          DOI: 10.1107/S160053680804110X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structure of 1,2-diamino­cyclo­hexane-N,N′-tetra­acetate ferrate(III), see: Seibig & Van Eldik (1998 ▶). For related tetra­acetate-based Cu(II) dimeric and polymeric complexes, see: Wang et al. (1999 ▶); Ben Amor & Jouini (1999 ▶). For highly stable chiral three-dimensional cadmium 1,2,4-benzene­tricarboxyl­ate structures with NLO and fluorescence properties, see: Wang et al. (2006 ▶). For a flexible multicarboxyl­ate ligand used to form homochiral helical Zn and Cd coordination polymers, see: Zang et al. (2006 ▶).

Experimental

Crystal data

(C14H24N2O8)[CdCl4]·4H2O M = 674.63 Monoclinic, a = 11.3772 (14) Å b = 8.5734 (10) Å c = 16.2189 (16) Å β = 124.119 (6)° V = 1309.7 (3) Å3 Z = 2 Mo Kα radiation μ = 1.30 mm−1 T = 291 (2) K 0.68 × 0.54 × 0.28 mm

Data collection

Siemens SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.472, T max = 0.712 12160 measured reflections 2400 independent reflections 2319 reflections with I > 2σ(I) R int = 0.021

Refinement

R[F 2 > 2σ(F 2)] = 0.025 wR(F 2) = 0.069 S = 1.01 2400 reflections 166 parameters 9 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.33 e Å−3 Δρmin = −0.59 e Å−3 Data collection: SMART (Siemens, 1996 ▶); cell refinement: SAINT (Siemens, 1996 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL/PC (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2003 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053680804110X/si2140sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680804110X/si2140Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
(C14H24N2O8)[CdCl4]·4H2OF(000) = 684
Mr = 674.63Dx = 1.711 Mg m3
Monoclinic, P2/cMo Kα radiation, λ = 0.71070 Å
Hall symbol: -P 2ycCell parameters from 4992 reflections
a = 11.3772 (14) Åθ = 3.0–25.4°
b = 8.5734 (10) ŵ = 1.30 mm1
c = 16.2189 (16) ÅT = 291 K
β = 124.119 (6)°Block, colorless
V = 1309.7 (3) Å30.68 × 0.54 × 0.28 mm
Z = 2
Siemens SMART CCD area-detector diffractometer2400 independent reflections
Radiation source: fine-focus sealed tube2319 reflections with I > 2σ(I)
graphiteRint = 0.021
ω scansθmax = 25.4°, θmin = 3.0°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −13→13
Tmin = 0.472, Tmax = 0.712k = −9→10
12160 measured reflectionsl = −19→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.025Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.069H atoms treated by a mixture of independent and constrained refinement
S = 1.01w = 1/[σ2(Fo2) + (0.0429P)2 + 0.6848P] where P = (Fo2 + 2Fc2)/3
2400 reflections(Δ/σ)max = 0.002
166 parametersΔρmax = 0.33 e Å3
9 restraintsΔρmin = −0.59 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cd10.00000.53761 (3)0.25000.03615 (11)
Cl10.02889 (8)0.72055 (7)0.37802 (5)0.04979 (18)
Cl20.21701 (5)0.38349 (7)0.32009 (4)0.03949 (15)
O10.4348 (2)0.2419 (2)0.94146 (13)0.0498 (5)
H1C0.36710.16500.90990.075*
O1W0.2453 (3)0.0262 (3)0.8865 (2)0.0679 (6)
O20.40158 (16)0.24536 (18)0.79129 (11)0.0359 (4)
O2W−0.0832 (3)0.9342 (3)0.8284 (2)0.0894 (9)
O30.75562 (17)0.18174 (18)0.96741 (12)0.0415 (4)
O40.96749 (15)0.3009 (2)1.05918 (12)0.0402 (4)
H4C0.99160.23071.10100.060*
N10.62609 (17)0.44661 (18)0.85909 (12)0.0222 (3)
H1B0.60070.36090.81940.027*
C10.5801 (2)0.5898 (2)0.79036 (14)0.0247 (4)
H1A0.62970.58540.75680.030*
C20.6258 (3)0.7396 (2)0.85186 (17)0.0363 (5)
H2A0.58480.74200.89050.044*
H2B0.72830.74020.89800.044*
C30.5796 (3)0.8841 (3)0.78646 (19)0.0443 (6)
H3A0.60880.97690.82770.053*
H3B0.62480.88560.75050.053*
C40.5549 (2)0.4321 (2)0.91397 (15)0.0270 (4)
H4A0.62610.41840.98460.032*
H4B0.50220.52670.90520.032*
C50.4558 (2)0.2950 (3)0.87470 (16)0.0301 (4)
C60.7845 (2)0.4427 (2)0.92917 (16)0.0306 (5)
H6A0.81570.52960.97520.037*
H6B0.82700.45390.89170.037*
C70.8335 (2)0.2919 (3)0.98686 (15)0.0306 (5)
H2WA−0.126 (7)0.924 (6)0.7667 (17)0.18 (3)*
H2WB−0.090 (5)1.020 (3)0.848 (3)0.106 (18)*
H1WA0.271 (5)−0.061 (4)0.915 (4)0.15 (2)*
H1WB0.189 (5)0.069 (4)0.899 (6)0.29 (5)*
U11U22U33U12U13U23
Cd10.03114 (15)0.04045 (17)0.03324 (15)0.0000.01584 (12)0.000
Cl10.0697 (4)0.0412 (3)0.0407 (3)0.0038 (3)0.0323 (3)−0.0005 (3)
Cl20.0280 (3)0.0544 (4)0.0334 (3)0.0020 (2)0.0156 (2)−0.0005 (2)
O10.0634 (11)0.0554 (11)0.0410 (10)−0.0215 (9)0.0357 (9)−0.0021 (8)
O1W0.0683 (14)0.0591 (14)0.0808 (16)−0.0126 (11)0.0445 (14)0.0116 (12)
O20.0398 (8)0.0370 (8)0.0317 (8)−0.0104 (7)0.0205 (7)−0.0036 (7)
O2W0.0851 (18)0.0461 (13)0.0653 (16)0.0025 (13)−0.0017 (14)0.0128 (12)
O30.0376 (9)0.0303 (8)0.0397 (9)−0.0023 (7)0.0113 (7)0.0016 (7)
O40.0262 (8)0.0442 (9)0.0355 (9)0.0021 (7)0.0083 (7)0.0114 (7)
N10.0222 (8)0.0239 (8)0.0187 (8)−0.0013 (6)0.0103 (7)−0.0016 (6)
C10.0271 (10)0.0240 (9)0.0206 (9)−0.0011 (8)0.0120 (9)0.0022 (8)
C20.0394 (12)0.0262 (11)0.0295 (11)−0.0050 (9)0.0109 (10)−0.0033 (9)
C30.0488 (14)0.0257 (11)0.0440 (13)−0.0060 (10)0.0174 (12)−0.0003 (10)
C40.0297 (10)0.0328 (10)0.0213 (10)0.0010 (9)0.0161 (9)0.0015 (8)
C50.0303 (11)0.0328 (11)0.0300 (11)0.0018 (9)0.0185 (9)0.0054 (9)
C60.0207 (10)0.0348 (11)0.0297 (11)−0.0005 (8)0.0101 (9)0.0033 (9)
C70.0288 (11)0.0341 (11)0.0241 (10)0.0006 (9)0.0119 (9)−0.0013 (9)
Cd1—Cl2i2.4465 (6)N1—H1B0.9105
Cd1—Cl22.4465 (6)C1—C21.527 (3)
Cd1—Cl12.4725 (7)C1—C1ii1.536 (4)
Cd1—Cl1i2.4725 (7)C1—H1A0.9800
O1—C51.314 (3)C2—C31.520 (3)
O1—H1C0.9209C2—H2A0.9700
O1W—H1WA0.84 (4)C2—H2B0.9700
O1W—H1WB0.86 (7)C3—C3ii1.508 (5)
O2—C51.207 (3)C3—H3A0.9700
O2W—H2WA0.84 (3)C3—H3B0.9700
O2W—H2WB0.82 (3)C4—C51.501 (3)
O3—C71.209 (3)C4—H4A0.9700
O4—C71.304 (3)C4—H4B0.9700
O4—H4C0.8305C6—C71.508 (3)
N1—C61.497 (3)C6—H6A0.9700
N1—C41.508 (2)C6—H6B0.9700
N1—C11.539 (2)
Cl2i—Cd1—Cl2114.62 (3)C1—C2—H2B109.2
Cl2i—Cd1—Cl1110.91 (2)H2A—C2—H2B107.9
Cl2—Cd1—Cl1109.16 (2)C3ii—C3—C2109.91 (19)
Cl2i—Cd1—Cl1i109.16 (2)C3ii—C3—H3A109.7
Cl2—Cd1—Cl1i110.91 (2)C2—C3—H3A109.7
Cl1—Cd1—Cl1i101.26 (3)C3ii—C3—H3B109.7
C5—O1—H1C105.8C2—C3—H3B109.7
H1WA—O1W—H1WB110 (3)H3A—C3—H3B108.2
H2WA—O2W—H2WB116 (3)C5—C4—N1109.79 (16)
C7—O4—H4C112.1C5—C4—H4A109.7
C6—N1—C4111.50 (15)N1—C4—H4A109.7
C6—N1—C1110.05 (15)C5—C4—H4B109.7
C4—N1—C1114.62 (15)N1—C4—H4B109.7
C6—N1—H1B106.8H4A—C4—H4B108.2
C4—N1—H1B106.7O2—C5—O1125.9 (2)
C1—N1—H1B106.7O2—C5—C4122.82 (18)
C2—C1—C1ii111.29 (14)O1—C5—C4111.22 (18)
C2—C1—N1110.17 (15)N1—C6—C7111.04 (17)
C1ii—C1—N1112.08 (13)N1—C6—H6A109.4
C2—C1—H1A107.7C7—C6—H6A109.4
C1ii—C1—H1A107.7N1—C6—H6B109.4
N1—C1—H1A107.7C7—C6—H6B109.4
C3—C2—C1111.84 (18)H6A—C6—H6B108.0
C3—C2—H2A109.2O3—C7—O4126.6 (2)
C1—C2—H2A109.2O3—C7—C6123.08 (19)
C3—C2—H2B109.2O4—C7—C6110.27 (18)
C6—N1—C1—C2−61.6 (2)C1—N1—C4—C5111.04 (18)
C4—N1—C1—C265.0 (2)N1—C4—C5—O2−26.1 (3)
C6—N1—C1—C1ii173.88 (18)N1—C4—C5—O1155.57 (17)
C4—N1—C1—C1ii−59.5 (2)C4—N1—C6—C760.0 (2)
C1ii—C1—C2—C3−53.8 (3)C1—N1—C6—C7−171.67 (16)
N1—C1—C2—C3−178.77 (19)N1—C6—C7—O310.0 (3)
C1—C2—C3—C3ii58.3 (3)N1—C6—C7—O4−168.89 (18)
C6—N1—C4—C5−123.10 (18)
D—H···AD—HH···AD···AD—H···A
O1W—H1WA···O3iii0.84 (4)2.34 (4)2.970 (3)132 (5)
N1—H1B···O20.912.272.750 (3)112
N1—H1B···O2ii0.912.042.857 (2)149
O1—H1C···O1W0.921.702.590 (4)162
O2W—H2WA···O1Wiv0.84 (3)2.24 (3)2.993 (4)151 (5)
O2W—H2WB···Cl1v0.82 (3)2.51 (4)3.144 (3)136 (4)
O1W—H1WB···Cl1vi0.86 (7)2.45 (3)3.227 (3)152 (6)
O4—H4C···O2Wvii0.831.752.535 (3)157
C1—H1A···Cl2viii0.982.673.637 (3)171
C4—H4A···Cl2ii0.972.643.600 (2)170
C4—H4B···Cl2vi0.972.833.610 (3)138
C6—H6A···Cl1ii0.972.603.537 (2)163
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1W—H1WA⋯O3i0.84 (4)2.34 (4)2.970 (3)132 (5)
N1—H1B⋯O20.912.272.750 (3)112
N1—H1B⋯O2ii0.912.042.857 (2)149
O1—H1C⋯O1W0.921.702.590 (4)162
O2W—H2WA⋯O1Wiii0.84 (3)2.24 (3)2.993 (4)151 (5)
O2W—H2WB⋯Cl1iv0.82 (3)2.51 (4)3.144 (3)136 (4)
O1W—H1WB⋯Cl1v0.86 (7)2.45 (3)3.227 (3)152 (6)
O4—H4C⋯O2Wvi0.831.752.535 (3)157
C1—H1A⋯Cl2vii0.982.673.637 (3)171
C4—H4A⋯Cl2ii0.972.643.600 (2)170
C4—H4B⋯Cl2v0.972.833.610 (3)138
C6—H6A⋯Cl1ii0.972.603.537 (2)163

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) ; (vii) .

  3 in total

1.  Assemblies of a new flexible multicarboxylate ligand and d10 metal centers toward the construction of homochiral helical coordination polymers: structures, luminescence, and NLO-active properties.

Authors:  Shuangquan Zang; Yang Su; Yizhi Li; Zhaoping Ni; Qingjin Meng
Journal:  Inorg Chem       Date:  2006-01-09       Impact factor: 5.165

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Highly stable chiral cadmium 1,2,4-benzenetricarboxylate: synthesis, structure, and NLO and fluorescence properties.

Authors:  Lei Wang; Ming Yang; Guanghua Li; Zhan Shi; Shouhua Feng
Journal:  Inorg Chem       Date:  2006-03-20       Impact factor: 5.165

  3 in total

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